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Characterization of genetic variants in the EGLN1/PHD2 gene identified in a European collection of patients with erythrocytosis [Elektronski vir]Delamare, Marine ...Hereditary erythrocytosis (HE) is a rare hematological disorder characterized by an excess of red blood cell production. Here we describe a European collaborative study involving a collection of 2160 ... patients with erythrocytosis sequenced in 10 different laboratories. We focused our study on the EGLN1 gene and identified 39 germline missense variants including one gene deletion in 47 probands. EGLN1 encodes the PHD2 prolyl 4-hydroxylase, a major inhibitor of the Hypoxia-Inducible Factor. We performed a comprehensive study to evaluate the causal role of the identified PHD2 variants: in silico study of localization, conservation, and deleterious effects; analysis of hematological parameters of carriers identified in the UK Biobank; functional studies of the protein activity and stability; and comprehensive study of PHD2 splicing. Altogether, this study allowed the classification of 16 pathogenic or likely pathogenic mutants in a total of 48 patients and relatives. The in silico studies extented to the variants described in the literature showed that a minority of PHD2 variants can be classified as pathogenic (36/96), without any differences with the variants of unknown significance regarding the severity of the developed disease (hematological parameters and complications). Here, we demonstrated the great value of federating laboratories working on such rare pathology to implement the criteria required for genetic classification, a strategy that should be extended to all hereditary hematological diseases.Source: Haematologica. - ISSN 1592-8721 (Vol. 108, iss. 11, 2023, str. 3068-3085)Type of material - e-article ; adult, seriousPublish date - 2023Language - englishCOBISS.SI-ID - 156881155
Author
Delamare, Marine |
Le Roy, Amandine |
Pacault, Mathilde |
Schmitt, Loic |
Garrec, Céline |
Maaziz, Nada |
Myllykoski, Matti |
Rimbert, Antoine |
Karaghiannis, Valéna
Other authors
Debeljak, Nataša
Topics
gen EGLN1/PHD2 |
genetske različice |
eritrocitoza |
EGLN1/PHD2 gene |
genetic variants |
erythrocytosis
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Database name | Field | Year |
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Links to authors' personal bibliographies | Links to information on researchers in the SICRIS system |
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Delamare, Marine | ![]() |
Le Roy, Amandine | ![]() |
Pacault, Mathilde | ![]() |
Schmitt, Loic | ![]() |
Garrec, Céline | ![]() |
Maaziz, Nada | ![]() |
Myllykoski, Matti | ![]() |
Rimbert, Antoine | ![]() |
Karaghiannis, Valéna | ![]() |
Debeljak, Nataša | 18622 |
Source: Personal bibliographies
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