Ninety-seven surface sediment samples were collected in September 2012 from intertidal and subtidal areas along the Loire estuary (western France). The main objective of this work is to study the ...spatial distributional patterns of living benthic foraminifera and their link to the environmental parameters (distance to sea, elevation, grain size, total organic carbon, trace metals, sedimentary carbonates, and polycyclic aromatic hydrocarbons) in the Loire estuary. Foraminiferal analysis was also extended to the dead assemblages in thirty-three surface samples from the lower inner estuary. The highest absolute densities of living benthic foraminifera are found in the lower inner estuary within the polyhaline domain. This is attributed to the presence of mudflats with abundant food source, i.e. microphytobenthos. The low densities found in the outer estuary (euhaline domain) are attributed partly to the sandy nature of the sediments and the food source inhabiting this substrate. The near absence of foraminifera in the inner estuary (mesohaline and polyhaline domains) is inferred to the physical disturbance resulting from the regular dredging of the navigation channel. The living assemblages are dominated by three typical estuarine species: Ammonia tepida and Haynesina germanica in the intertidal mudflats of the lower inner estuary and Cribroelphidium excavatum in the sandy subtidal sediments of the lower inner and outer estuary. In the Loire estuary, H. germanica has an unusual intermediate geographical distribution along the estuary between A. tepida and C. excavatum while in most temperate estuaries this species is present upstream in the mesohaline domain. This is most likely the result of the regular dredging of the navigation channel damaging its natural habitat. This might be also the explanation for the total absence of agglutinated species usually dominating the oligohaline domain. The canonical correspondence analysis shows that elevation (and its link to time of emersion), distance to sea (and its correspondence with salinity), and organic carbon content appear to be the primary drivers of foraminiferal distribution. The present study provides for the first time ecological and distribution patterns of living benthic foraminiferal communities in the Loire estuary. This baseline knowledge is necessary for the future studies focusing on the use of benthic foraminifera as bio-indicators in the Loire estuary and in transitional environments in general.
•We report the first spatial study of living benthic foraminifera in the Loire estuary.•Faunal density is higher in the intertidal areas.•Living agglutinated species are totally absent.•Distance to sea, elevation and food source are determinant for faunal distribution.•This is the first step towards developing a biotic index in the Loire estuary.
Full text
Available for:
GEOZS, IJS, IMTLJ, KILJ, KISLJ, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK, ZRSKP
This study was carried out at the mouth of a small river of the Atlantic coast of France, with the aim of investigating medium-scale patchiness and life cycles in time series samples of foraminiferal ...assemblages.
Sampling was carried out at three stations, irregularly between January 2000 and September 2001, and on a monthly/bimonthly basis, between September 2001 and September 2003. A monthly sampling was continued until April 2004 at two stations. Samples were also collected at ten selected sampling sites, in October 2002, with the aim of getting information about spatial distribution of foraminifera, either at the same intertidal level or at different elevations. Living assemblages were studied in each sample, and compared to total assemblages from about half of the samples. A pseudoreplication procedure was used to circumvent small-scale patchiness.
This study confirms that paralic foraminifera do not have reproducible annual life cycles and that isolated samplings of living assemblages may provide different or even contradictory results, depending if the sampling is done during the bloom or not. It also shows that, even if blooms occur at periods close together for all the species at neighboring stations, differences exist between stations located in the same environment, 10 m apart. Thus, isolated or even seasonal samplings of living foraminiferal assemblages cannot be considered as giving a valuable image of environmental conditions. Conversely, total assemblages provide integrated information about homogenized assemblages over a given period of time. This study demonstrates that exchanges of tests by transport between low marsh to high marsh is weak or absent, but small-scale post mortem transport leads to the homogenization of the assemblage.
Full text
Available for:
IJS, IMTLJ, KILJ, KISLJ, NUK, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK
New observations from Yeu Island and the Bay of Bourgneuf on the Atlantic coast of France show that
Ammonia beccarii s.s. and
Ammonia tepida have different morphofunctional adaptations to their ...habitats and environments. Adult
A. beccarii s.s. may be epiphytic, living on the calcareous alga
Corallina officinalis or on the red alga
Gigartina acicularis along rocky shores, while
A. tepida is endopelic, living in sediments of brackish environments. Rapid 3-D emission of pseudopodia from interlocular spaces on both umbilical and spiral sides of adult
A. beccarii s.s. can support its test within the seaweed framework. This behaviour is characteristic of phytal species. Thus, it appears that the major difference between
A. beccarii s.s. and
A. tepida is the presence of large interlocular spaces on spiral side of the former, corresponding to a potential morphofunctional adaptation to the epiphytic mode of life. We believe that these observations could help to solve the long-lasting
A. beccarii problems of specific distinction.
Full text
Available for:
IJS, IMTLJ, KILJ, KISLJ, NUK, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK
Display omitted
•Lignin has been used to introduce mesoporosity in FAU zeolites.•Micro- and mesoporous FAU zeolites have been prepared via hydrothermal and alkaline desilication.•Coumarins have been ...succesfully synthesized using H-FAU zeolites.
Herein, the effect of various treatments subjected to FAU zeolites to introduce mesoporosity has been examined on their efficiency as catalyst in the cyclisation of O-aryl 3-arylpropynoic acid ester to its corresponding coumarin.
The addition of bio-sourced lignin residues in the alkaline desilication treatment induced the generation of supplementary mesoporosity, thus offering an optimal micro- and mesopores combination with respect to targeted activity and selectivity.
The so-called bio-sourced secondary template (BSST) concept in the design of zeolite-based catalysts could be assessed. The use of renewable wood feedstocks can therefore be a valuable strategy for the zeolite post-modification, thus for the design of porous zeolite catalysts.
Full text
Available for:
GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
Presento in quest’articolo una notizia della imminente pubblicazione di un libro, Le verace istorie Romane, basato sul manoscrittto Hamilton 67 della Bi- blioteca nazionale della Germania a Berlino, ...datato 1313. In questo articolo sot- tolineo il rapporto fra i diversi codici, la forma della scrittura dell’estensore Lapo Corsini e la sua storia, e il metodo unico di contaminare e di associare codici da lingue diverse. Alla fine dell’articolo presento due campioni del testo, dalla storia dell’invasione di Annibale e delle meraviglie che appaiono, e dal racconto della peste e dell’infestazione mortale dei grilli.
Despite the importance of the microbiota in human physiology, the molecular bases that govern the interactions between these commensal bacteria and their host remain poorly understood. We recently ...reported that sulfatases play a key role in the adaptation of a major human commensal bacterium, Bacteroides thetaiotaomicron, to its host (Benjdia, A., Martens, E. C., Gordon, J. I., and Berteau, O. (2011) J. Biol. Chem. 286, 25973–25982). We hypothesized that sulfatases are instrumental for this bacterium, and related Bacteroides species, to metabolize highly sulfated glycans (i.e. mucins and glycosaminoglycans (GAGs)) and to colonize the intestinal mucosal layer. Based on our previous study, we investigated 10 sulfatase genes induced in the presence of host glycans. Biochemical characterization of these potential sulfatases allowed the identification of GAG-specific sulfatases selective for the type of saccharide residue and the attachment position of the sulfate group. Although some GAG-specific bacterial sulfatase activities have been described in the literature, we report here for the first time the identity and the biochemical characterization of four GAG-specific sulfatases. Furthermore, contrary to the current paradigm, we discovered that B. thetaiotaomicron possesses an authentic GAG endosulfatase that is active at the polymer level. This type of sulfatase is the first one to be identified in a bacterium. Our study thus demonstrates that bacteria have evolved more sophisticated and diverse GAG sulfatases than anticipated and establishes how B. thetaiotaomicron, and other major human commensal bacteria, can metabolize and potentially tailor complex host glycans.
Full text
Available for:
GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
Deregulated expression of glycolytic enzymes contributes not only to the increased energy demands of transformed cells but also has non-glycolytic roles in tumors. However, the contribution of these ...non-glycolytic functions in tumor progression remains poorly defined. Here, we show that elevated expression of glyceraldehyde-3-phosphate dehydrogenase (GAPDH), but not of other glycolytic enzymes tested, increased aggressiveness and vascularization of non-Hodgkin's lymphoma. Elevated GAPDH expression was found to promote nuclear factor-κB (NF-κB) activation via binding to tumor necrosis factor receptor-associated factor-2 (TRAF2), enhancing the transcription and the activity of hypoxia-inducing factor-1α (HIF-1α). Consistent with this, inactive mutants of GAPDH failed to bind TRAF2, enhance HIF-1 activity or promote lymphomagenesis. Furthermore, elevated expression of gapdh mRNA in biopsies from diffuse large B-cell non-Hodgkin's lymphoma patients correlated with high levels of hif-1α, vegf-a, nfkbia mRNA and CD31 staining. Collectively, these data indicate that deregulated GAPDH expression promotes NF-κB-dependent induction of HIF-1α and has a key role in lymphoma vascularization and aggressiveness.
Full text
Available for:
DOBA, EMUNI, FIS, FZAB, GEOZS, GIS, IJS, IMTLJ, IZUM, KILJ, KISLJ, MFDPS, NLZOH, NUK, OILJ, PILJ, PNG, SAZU, SBCE, SBJE, SBMB, SBNM, UILJ, UKNU, UL, UM, UPUK, VKSCE, ZAGLJ
Most cancer cells exhibit increased glycolysis for generation of their energy supply. This specificity could be used to preferentially kill these cells. In this study, we identified the signaling ...pathway initiated by glycolysis inhibition that results in sensitization to death receptor (DR)-induced apoptosis. We showed, in several human cancer cell lines (such as Jurkat, HeLa, U937), that glucose removal or the use of nonmetabolizable form of glucose (2-deoxyglucose) dramatically enhances apoptosis induced by Fas or by tumor necrosis factor-related apoptosis-inducing ligand. This sensitization is controlled through the adenosine monophosphate (AMP)-activated protein kinase (AMPK), which is the central energy-sensing system of the cell. We established the fact that AMPK is activated upon glycolysis block resulting in mammalian target of rapamycin (mTOR) inhibition leading to Mcl-1 decrease, but no other Bcl-2 anti-apoptotic members. Interestingly, we determined that, upon glycolysis inhibition, the AMPK-mTOR pathway controlled Mcl-1 levels neither through transcriptional nor through posttranslational mechanism but rather by controlling its translation. Therefore, our results show a novel mechanism for the sensitization to DR-induced apoptosis linking glucose metabolism to Mcl-1 downexpression. In addition, this study provides a rationale for the combined use of DR ligands with AMPK activators or mTOR inhibitors in the treatment of human cancers.
Full text
Available for:
DOBA, EMUNI, FIS, FZAB, GEOZS, GIS, IJS, IMTLJ, IZUM, KILJ, KISLJ, MFDPS, NLZOH, NUK, OILJ, PILJ, PNG, SAZU, SBCE, SBJE, SBMB, SBNM, UILJ, UKNU, UL, UM, UPUK, VKSCE, ZAGLJ
Delineation of 15q13.3 microdeletions Masurel-Paulet, A; Andrieux, J; Callier, P ...
Clinical genetics,
August 2010, Volume:
78, Issue:
2
Journal Article
Peer reviewed
Masurel‐Paulet A, Andrieux J, Callier P, Cuisset JM, Le Caignec C, Holder M, Thauvin‐Robinet C, Doray B, Flori E, Alex‐Cordier MP, Beri M, Boute O, Delobel B, Dieux A, Vallee L, Jaillard S, Odent S, ...Isidor B, Beneteau C, Vigneron J, Bilan F, Gilbert‐Dussardier B, Dubourg C, Labalme A, Gautier A, Pernes P, Bidon C, Pinoit JM, Huet F, Mugneret F, Aral B, Jonveaux P, Sanlaville D, Faivre L. Delineation of 15q13.3 microdeletions.
The increasing use of array‐comparative genomic hybridization (array‐CGH) to identify copy number variations (CNVs) in patients with developmental delay (DD), mental retardation and/or dysmorphic features has allowed the recent recognition of numerous genomic imbalances, including the 15q13.3 microdeletion. Patients with this microdeletion generally present with relatively consistent breakpoints at BP4 and BP5, which include the CHRNA7 gene. About 100 index cases have been reported since the first publication in 2008. This large number of patients ascertained through highly variable samples has been necessary to describe the full phenotypic spectrum of this microdeletion, ranging from mental retardation with dysmorphic features, epilepsy, neuropsychiatric disturbances with or without cognitive impairment to complete absence of anomalies. Here, we describe a collaborative study reporting a new cohort of 12 index patients and 13 relatives carrying a heterozygous BP4–BP5 microdeletion out of a series of 4625 patients screened by array‐CGH for DD. We confirm the clinical expressivity of the disease as well as the incomplete penetrance in seven families. We showed through a review of the literature that males are more likely to be symptomatic. Sequence analysis of CHRNA7 yielded no data to support the unmasking of recessive variants as a cause of phenotypic variability. We also report the first patient carrying a 15q13.3 homozygous microdeletion inherited from both parents. He had severe epileptic encephalopathy with retinopathy, autistic features and choreoathetosis. Besides the classical ∼1.5 Mb BP4–BP5 microdeletion, we also describe three index patients and two relatives with a smaller 500 kb microdeletion, including the CHRNA7 gene.
Full text
Available for:
BFBNIB, FZAB, GIS, IJS, KILJ, NLZOH, NUK, OILJ, SAZU, SBCE, SBMB, UL, UM, UPUK
PDF
