Whether by design or default, single species management often serves as an umbrella for species with similar habitat requirements. In recent decades the focus of National Forest management in the ...Sierra Nevada of California has shifted towards increasing closed canopy mature forest conditions through the protection of areas occupied by the California Spotted Owl (Strix occidentalis occidentalis). To evaluate the implications of these habitat changes and the potential umbrella resulting from a system of owl reserves on the broader avian community, we estimated occupancy of birds inside and outside of Spotted Owl Home Range Core Areas in northeastern California. We used point count data in a multi-species hierarchical Bayesian model incorporating the detection history of 81 species over a two-year time period (2005-2006). A small set of vegetation cover and topography covariates were included in the model to account for broad differences in habitat conditions, as well as a term identifying whether or not a site was within a Core Area. Seventeen species had a negative Core Area effect, seven had a positive effect, and the rest were not significant. Estimated species richness was significantly different with 23.1 species per 100 m radius circle outside Core Areas and 21.7 inside Core Areas. The majority of the species negatively associated with Core Areas are tied to early successional and other disturbance-dependent habitats. Conservation and climate vulnerability rankings were mixed. On average we found higher scores (greater risk) for the species positively associated with Core Areas, but a larger number of species with the highest scores were negatively associated with Core Areas. We discuss the implications for managing the Sierra Nevada ecosystem and illustrate the role of monitoring broader suites of species in guiding management of large complex ecosystems.
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DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Wet montane meadows are an important component of the Sierra Nevada, CA ecosystem that provide diverse ecological services when in functional condition. Efforts are underway to restore meadows that ...have been degraded from past and historic land uses. Livestock grazing is a common land use in meadows with the potential to impact Sierra meadow ecology and may be a critical determinant of restoration success. We used a systematic literature review (SLR) method to identify, review, and synthesize scientific literature about the ecological effects of livestock grazing on Sierra meadow ecology resource areas, including hydrologic function, water quality, plants, soil, fens, and fish and wildlife species. We found 47 studies that matched our search criteria for inclusion in this SLR. Livestock grazing was associated with predominantly negative effects for each resource area reviewed, suggesting that achieving functional ecological condition in Sierra meadows that are currently used for livestock grazing may be challenging. Nevertheless, there was some evidence for compatibility with certain resource areas and certain management regimes. We discuss livestock management options, ecological objectives, and research questions that emerge from the literature to help inform meadow restoration and management.
Expansion of GAA x TTC triplets within an intron in FXN (the gene encoding frataxin) leads to transcription silencing, forming the molecular basis for the neurodegenerative disease Friedreich's ...ataxia. Gene silencing at expanded FXN alleles is accompanied by hypoacetylation of histones H3 and H4 and trimethylation of histone H3 at Lys9, observations that are consistent with a heterochromatin-mediated repression mechanism. We describe the synthesis and characterization of a class of histone deacetylase (HDAC) inhibitors that reverse FXN silencing in primary lymphocytes from individuals with Friedreich's ataxia. We show that these molecules directly affect the histones associated with FXN, increasing acetylation at particular lysine residues on histones H3 and H4 (H3K14, H4K5 and H4K12). This class of HDAC inhibitors may yield therapeutics for Friedreich's ataxia.
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Abstract
Background
Predominance of 2 antigenically drifted influenza viruses during the 2019–2020 season offered an opportunity to assess vaccine effectiveness against life-threatening pediatric ...influenza disease from vaccine-mismatched viruses in the United States.
Methods
We enrolled children aged <18 years admitted to the intensive care unit with acute respiratory infection across 17 hospitals. Respiratory specimens were tested using reverse-transcription polymerase chain reaction for influenza viruses and sequenced. Using a test-negative design, we estimated vaccine effectiveness comparing odds of vaccination in test-positive case patients vs test-negative controls, stratifying by age, virus type, and severity. Life-threating influenza included death or invasive mechanical ventilation, vasopressors, cardiopulmonary resuscitation, dialysis, or extracorporeal membrane oxygenation.
Results
We enrolled 159 critically ill influenza case-patients (70% ≤8 years; 51% A/H1N1pdm09 and 25% B-Victoria viruses) and 132 controls (69% were aged ≤8 years). Among 56 sequenced A/H1N1pdm09 viruses, 29 (52%) were vaccine-mismatched (A/H1N1pdm09/5A+156K) and 23 (41%) were vaccine-matched (A/H1N1pdm09/5A+187A,189E). Among sequenced B-lineage viruses, majority (30 of 31) were vaccine-mismatched. Effectiveness against critical influenza was 63% (95% confidence interval CI, 38% to 78%) and similar by age. Effectiveness was 75% (95% CI, 49% to 88%) against life-threatening influenza vs 57% (95% CI, 24% to 76%) against non-life-threating influenza. Effectiveness was 78% (95% CI, 41% to 92%) against matched A(H1N1)pdm09 viruses, 47% (95% CI, –21% to 77%) against mismatched A(H1N1)pdm09 viruses, and 75% (95% CI, 37% to 90%) against mismatched B-Victoria viruses.
Conclusions
During a season when vaccine-mismatched influenza viruses predominated, vaccination was associated with a reduced risk of critical and life-threatening influenza illness in children.
In the largest study of its kind, vaccination averted most critical (63%) and life-threatening (75%) influenza among children aged <18 years. This reduction was impressive because vaccine components were mismatched to the 2 predominant circulating influenza strains during this season.
Mobile learning (mLearning) devices (such as tablets and smartphones) are increasingly part of the clinical environment but there is a limited and somewhat conflicting literature regarding the impact ...of such devices in the clinical learning environment. This study aims to: assess the impact of mLearning devices in the clinical learning environment on medical students' studying habits, attitudes towards mobile device supported learning; and the perceived reaction of clinicians and patients to the use of these devices as part of learning in the clinical setting.
Over three consecutive academic years, 18 cohorts of medical students (total n = 275) on a six-week rotation at a large teaching hospital in London were supplied with mLearning devices (iPad mini) to support their placement-based learning. Feedback on their experiences and perceptions was collected via pre- and post-use questionnaires.
The results suggest mLearning devices have a positive effect on the students' perceived efficiency of working, while experience of usage not only confirmed pre-existing positive opinions about devices but also disputed some expected limitations associated with mLearning devices in the clinical workplace. Students were more likely to use devices in 'down-time' than as part of their clinical learning. As anticipated, both by users and from the literature, universal internet access was a major limitation to device use. The results were inconclusive about the student preference for device provision versus supporting a pre-owned device.
M-learning devices can have a positive impact on the learning experiences medical students during their clinical attachments. The results supported the feasibility of providing mLearning devices to support learning in the clinical environment. However, universal internet is a fundamental limitation to optimal device utilisation.
Transcriptional dysregulation has emerged as a core pathologic feature of Huntington's disease (HD), one of several triplet-repeat disorders characterized by movement deficits and cognitive ...dysfunction. Although the mechanisms contributing to the gene expression deficits remain unknown, therapeutic strategies have aimed to improve transcriptional output via modulation of chromatin structure. Recent studies have demonstrated therapeutic effects of commercially available histone deacetylase (HDAC) inhibitors in several HD models; however, the therapeutic value of these compounds is limited by their toxic effects. Here, beneficial effects of a novel pimelic diphenylamide HDAC inhibitor, HDACi 4b, in an HD mouse model are reported. Chronic oral administration of HDACi 4b, beginning after the onset of motor deficits, significantly improved motor performance, overall appearance, and body weight of symptomatic R6/2³⁰⁰Q transgenic mice. These effects were associated with significant attenuation of gross brain-size decline and striatal atrophy. Microarray studies revealed that HDACi 4b treatment ameliorated, in part, alterations in gene expression caused by the presence of mutant huntingtin protein in the striatum, cortex, and cerebellum of R6/2³⁰⁰Q transgenic mice. For selected genes, HDACi 4b treatment reversed histone H3 hypoacetylation observed in the presence of mutant huntingtin, in association with correction of mRNA expression levels. These findings suggest that HDACi 4b, and possibly related HDAC inhibitors, may offer clinical benefit for HD patients and provide a novel set of potential biomarkers for clinical assessment.
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Montane riparian meadows foster biodiversity and support critical ecosystem services. A history of exploitation has left most riparian meadows throughout the Mountain West of the United States with ...incised channels, severely compromising their functionality. Hydrologic restoration of riparian meadows aims to increase overbank flow during spring run‐off and elevate groundwater levels in the dry season. Outcome‐based evaluations of the dominant meadow restoration methods are lacking and needed to ensure objectives are being met and to guide modifications where needed. We completed 1,282 point count surveys from 2009 to 2017 at 173 sampling locations across 31 montane riparian meadows in California restored using partial channel fill techniques (e.g. pond‐and‐plug) to evaluate the expected outcome of increased abundance of meadow birds. We analyzed trends in abundance for 12 focal bird species from 1 to 18 years after hydrologic restoration, substituting space for time in our mixed effects Poisson regression models that included covariates for the amount of riparian deciduous vegetation (RDV) before restoration, stream flow, precipitation, and temperature. We found evidence for a positive effect of time since restoration on abundance for 6 of the 12 species. Although pre‐restoration RDV cover was the most frequently supported predictor of abundance, high pre‐restoration cover of RDV slowed response rates for only two species, suggesting other elements of hydrologic function are also important for meadow birds. Drawing on our results, we provide suggestions for enhancing hydrologic restoration efforts in riparian meadows so that benefits may accrue more quickly to more bird species.
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FZAB, GIS, IJS, KILJ, NLZOH, NUK, OILJ, SAZU, SBCE, SBMB, UL, UM, UPUK
Woodpeckers are often focal species for informing management of recently burned forests. Snags generated by wildfire provide key nesting and foraging resources for woodpeckers, and nest cavities ...excavated by woodpeckers are subsequently used by many other species. Habitat suitability models applicable in newly burned forest are important management tools for identifying areas likely to be used by nesting woodpeckers. Here we present and test predictive models for mapping woodpecker nest-site habitat across wildfire locations that can be used to inform post-fire planning and salvage logging decisions. From 2009 to 2016, we monitored 313 nest sites of 4 species—Black-backed Woodpecker (Picoides arcticus), Hairy Woodpecker (Dryobates villosus), White-headed Woodpecker (D. albolarvatus), and Northern Flicker (Colaptes auratus)—from 3 wildfires in the Northern Sierra Nevada and Southern Cascades 1–5 yr after fire. Using these data, we developed habitat suitability index models that compared nest vs. non-nest sites for each species using (1) exclusively remotely sensed covariates, and (2) combinations of remotely sensed and field-collected covariates. We emphasized predictive performance across wildfire locations when selecting models to retain generalizable habitat relationships useful for informing management in newly burned locations. We identified models for all 4 species with strong predictive performance across wildfire locations despite notable variation in conditions among locations, suggesting broad applicability to guide post-fire management in the Sierra Nevada region. Top models for nest-site selection underscored the importance of high burn severity at the local scale, lower burn severity at the 1-km scale, mid-sized nest-tree diameters, and nest trees with broken tops. Models restricted to remotely sensed covariates exhibited similar predictive performance as combination models and are valuable for mapping habitat across entire wildfire locations to help delineate project areas or habitat reserves. Combination models are especially relevant for design of silvicultural prescriptions.
Silvicultural treatments, fire, and insect outbreaks are the primary disturbance events currently affecting forests in the Sierra Nevada Mountains of California, a region where plants and wildlife ...are highly adapted to a frequent-fire disturbance regime that has been suppressed for decades. Although the effects of both fire and silviculture on wildlife have been studied by many, there are few studies that directly compare their long-term effects on wildlife communities. We conducted avian point counts from 2010 to 2019 at 1987 in situ field survey locations across eight national forests and collected fire and silvicultural treatment data from 1987 to 2016, resulting in a 20-year post-disturbance chronosequence. We evaluated two categories of fire severity in comparison to silvicultural management (largely pre-commercial and commercial thinning treatments) as well as undisturbed locations to model their influences on abundances of 71 breeding bird species. More species (48% of the community) reached peak abundance at moderate-high-severity-fire locations than at low-severity fire (8%), silvicultural management (16%), or undisturbed (13%) locations. Total community abundance was highest in undisturbed dense forests as well as in the first few years after silvicultural management and lowest in the first few years after moderate-high-severity fire, then abundance in all types of disturbed habitats was similar by 10 years after disturbance. Even though the total community abundance was relatively low in moderate-high-severity-fire habitats, species diversity was the highest. Moderate-high-severity fire supported a unique portion of the avian community, while low-severity fire and silvicultural management were relatively similar. We conclude that a significant portion of the bird community in the Sierra Nevada region is dependent on moderate-high-severity fire and thus recommend that a prescribed and managed wildfire program that incorporates a variety of fire effects will best maintain biodiversity in this region.
A principal challenge of federal forest management has been maintaining and improving habitat for sensitive species in forests adapted to frequent, low- to moderate-intensity fire regimes that have ...become increasingly vulnerable to uncharacteristically severe wildfires. To enhance forest resilience, a coordinated landscape fuel network was installed in the northern Sierra Nevada, which reduced the potential for hazardous fire, despite constraints for wildlife protection that limited the extent and intensity of treatments. Small mammal and songbird communities were largely unaffected by this landscape strategy, but the number of California spotted owl territories declined. The effects on owls could have been mitigated by increasing the spatial heterogeneity of fuel treatments and by using more prescribed fire or managed wildfire to better mimic historic vegetation patterns and processes. More landscape-scale experimentation with strategies that conserve key wildlife species while also improving forest resiliency is needed, especially in response to continued warming climates.
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