ABSTRACT
We report observations and analysis of the nearby gamma-ray burst GRB 161219B (redshift z = 0.1475) and the associated Type Ic supernova (SN) 2016jca. GRB 161219B had an isotropic gamma-ray ...energy of ∼1.6 × 1050 erg. Its afterglow is likely refreshed at an epoch preceding the first photometric points (0.6 d), which slows down the decay rates. Combined analysis of the SN light curve and multiwavelength observations of the afterglow suggest that the GRB jet was broad during the afterglow phase (full opening angle ∼42° ± 3°). Our spectral series shows broad absorption lines typical of GRB supernovae (SNe), which testify to the presence of material with velocities up to ∼0.25c. The spectrum at 3.73 d allows for the very early identification of an SN associated with a GRB. Reproducing it requires a large photospheric velocity ($35\, 000 \pm 7000$ km s−1). The kinetic energy of the SN is estimated through models to be Ekin≈4 × 1052 erg in spherical symmetry. The ejected mass in the explosion was Mej≈6.5 ± 1.5 M⊙, much less than that of other GRB-SNe, demonstrating diversity among these events. The total amount of 56Ni in the explosion was 0.27 ± 0.05 M⊙. The observed spectra require the presence of freshly synthesized 56Ni at the highest velocities, at least three times more than a standard GRB-SN. We also find evidence for a decreasing 56Ni abundance as a function of decreasing velocity. This suggests that SN 2016jca was a highly aspherical explosion viewed close to on-axis, powered by a compact remnant. Applying a typical correction for asymmetry, the energy of SN 2016jca was ∼(1–3) × 1052 erg, confirming that most of the energy produced by GRB-SNe goes into the kinetic energy of the SN ejecta.
The performance of check-all-that-apply (CATA), projective mapping, sorting and intensity scales was assessed for determining consumer perception of probiotic yogurts, two prototypes added with ...glucose oxidase, a potential oxygen scavenger and 04 commercial brands available in the Brazilian market. Each sensory methodology was tested by administrating the tests to 30 regular consumers of the product. Napping and CATA did not provide adequate discrimination of the samples while better results were noted for sorting and intensity scales, separating the yogurts containing glucose oxidase from the commercial probiotic yogurt. Sensory methodologies using consumer responses present potential options for the characterization of food matrices with multiple sensory sensations, such as probiotic yogurt.
•CATA, sorting, napping and intensity scales to characterize probiotic yogurts•Sorting and intensity scales presented similar results.•Prototype yogurts presented red points, acid taste, bitter taste and viscous.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK
With the increasing demand for nanomaterials, it is essential that they are produced, where possible, by sustainable or “green” synthesis methods, avoiding environmentally harmful processes and ...solvents, with the aim of reducing the production of hazardous byproducts and wastes and minimizing environmental impact. In this work, Ag-modified titania nanoparticles (NPs) were synthesized via a green aqueous sol–gel method. The products of the synthesis were thermally treated at 450 and 600 °C, and their photocatalytic (in liquid–solid and gas–solid phases) and antibacterial properties were assessed using both UV- and visible-light exposure. The microstructure and phase composition of the prepared samples were also characterized using advanced X-ray powder diffraction methods (whole powder pattern modeling). Results showed that both the amount of Ag and the thermal treatment greatly influenced not only the phase composition and microstructure but also the functional properties of the TiO2. The increasing levels of Ag retarded the anatase-to-rutile phase transition to a greater extent, and 2 mol % was the optimum amount of Ag for methylene blue photodegradation with both UV- and visible-light irradiation. When using a UV-light source, samples showed a much greater antibacterial activity toward Escherichia coli (E. coli; Gram-negative) than methicillin-resistant Staphylococcus aureous (Gram-positive). It was observed that UV light caused a change in the oxidation state of silver, from ionic silver to metallic (Ag+ → Ag0 NPs), this being detrimental for the antibacterial activity. However, under artificial white light irradiation this did not occur and the material kept its excellent antibacterial properties (higher activity than commercial P25); because of this, it could be suitable for use in health care, helping to greatly reduce the spread of Gram-negative type bacteria such as E. coli.
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IJS, KILJ, NUK, PNG, UL, UM
Genetically engineered mice (GEM) are essential tools for understanding gene function and disease modeling. Historically, gene targeting was first done in embryonic stem cells (ESCs) derived from the ...129 family of inbred strains, leading to a mixed background or congenic mice when crossed with C57BL/6 mice. Depending on the number of backcrosses and breeding strategies, genomic segments from 129-derived ESCs can be introgressed into the C57BL/6 genome, establishing a unique genetic makeup that needs characterization in order to obtain valid conclusions from experiments using GEM lines. Currently, SNP genotyping is used to detect the extent of 129-derived ESC genome introgression into C57BL/6 recipients; however, it fails to detect novel/rare variants.
Here, we present a computational pipeline implemented in the Galaxy platform and in BASH/R script to determine genetic introgression of GEM using next generation sequencing data (NGS), such as whole genome sequencing (WGS), whole exome sequencing (WES) and RNA-Seq. The pipeline includes strategies to uncover variants linked to a targeted locus, genome-wide variant visualization, and the identification of potential modifier genes. Although these methods apply to congenic mice, they can also be used to describe variants fixed by genetic drift. As a proof of principle, we analyzed publicly available RNA-Seq data from five congenic knockout (KO) lines and our own RNA-Seq data from the Sall2 KO line. Additionally, we performed target validation using several genetics approaches.
We revealed the impact of the 129-derived ESC genome introgression on gene expression, predicted potential modifier genes, and identified potential phenotypic interference in KO lines. Our results demonstrate that our new approach is an effective method to determine genetic introgression of GEM.
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DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Spectral analysis is widely used to estimate and refine earthquake source parameters such as source radius, seismic moment, and stress drop. This study aims to quantify the precision of the single ...spectra and empirical Green's function spectral ratio approach using the Large‐n Seismic Survey in Oklahoma (LASSO) array. The dense station coverage in an area of local saltwater disposal offers a unique opportunity to observe and quantify radiation pattern effects and subsequent precision of spectral estimates of small earthquakes (M < 3). The results suggest that the precision of source properties estimated from direct phase arrivals for arrays with less than 20 stations should be assumed to be not less than 30% and could be as high as 150% if less than five stations are used. Furthermore, we do not see clear evidence for, or against, a scaling of stress drop with magnitude of small earthquakes (M < 3) as observed by other studies.
Plain Language Summary
Seismologists use ground motion recordings of seismic waves (seismograms) to infer details about the earthquake rupture process. While large earthquakes often generate a physical imprint on the earth's surface through surface rupture, small earthquakes can often only be studied from seismograms. Nevertheless, small earthquakes are of particular interest to learning about the rupture process for many reasons. For example, they are much more numerous than larger magnitude earthquakes and might rupture by the same physical process(es). While seismic arrays are usually restricted to a few to tens of stations, here we use a very large seismic array with >1,800 temporary stations to study small earthquakes and how station resolution may bias source property estimates. Source properties include the physical size of the rupture surface and the corresponding slip on that surface, which relate to the amount of stress released by the earthquake. The large number of stations allows us to estimate the source properties in unique detail and test the variability in measurements using different numbers of stations to estimate the precision. We find that the estimation of source properties is highly biased when using a small number of stations (<20), which should be taken under consideration in future studies.
Key Points
We used a Large‐n Seismic Array to investigate the robustness of direct wave spectral estimates
P wave single spectra reveal azimuthal dependency of corner frequency and long‐ period spectral amplitudes
P wave single spectra and spectral ratio corner frequency estimates are highly biased by using a small number of stations
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FZAB, GIS, IJS, KILJ, NLZOH, NUK, OILJ, SBCE, SBMB, UL, UM, UPUK
Aims.
Gamma-ray burst (GRB) 190829A (
z
= 0.0785) was detected by
Fermi
and
Swift
and also at very high energy (VHE) by the High-Energy Stereoscopic System (H.E.S.S.) telescopes. The prompt emission ...displayed two emission episodes separated by a quiescent gap of ∼40 s. We present the 10.4 m Gran Telescopio Canarias (GTC) observations of the afterglow of GRB 190829A and its underlying supernova. We also compare GRB 190829A to GRB 180728A, a GRB with similar behaviour, and discuss the implications on underlying physical mechanisms producing these two GRBs.
Methods.
We present multi-band photometric data along with spectroscopic follow-up observations taken with the 10.4 m GTC telescope. Together with the data from the prompt emission, the 10.4 m GTC data are used to understand the emission mechanisms and possible progenitor.
Results.
A detailed analysis of the multi-band observations of the afterglow requires the cooling frequency to pass between the optical and X-ray bands at early epochs. The afterglow then transitions to the underlying supernova (SN) 2019oyw, which dominates later on.
Conclusions.
Although the prompt emission temporal properties of GRB 190829A and GRB 180728A are similar, the two pulses are different in the spectral domain. We find that SN 2019oyw associated with GRB 190829A is powered by Ni decay and is a Type Ic-BL SN. The spectroscopic and photometric properties of this SN are consistent with those observed for SN 1998bw, but evolved earlier.
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FMFMET, NUK, UL, UM, UPUK
This study is focused on the diversity of bacterial communities from two series of horizontal subsurface flow constructed wetlands (CW) polishing high salinity tannery wastewater. Each series was ...planted with
Arundo donax or
Sarcocornia sp. in a substrate composed by expanded clay and sand. Chemical and biochemical oxygen demand removal efficiencies were similar in each series, varying between 58 and 67% (inlet COD 218 ± 28 mg L
−1) and 60 and 77% (inlet BOD
5 37 ± 6 mg L
−1), respectively. High numbers of culturable bacteria were obtained from substrate and root samples – 5.75 × 10
6-3.95 × 10
8 CFU g
−1 recovered on marine agar and 1.72 × 10
7-8.46 × 10
8 CFU g
−1 on nutrient agar. Fifty bacterial isolates were retrieved from the CW, related phylogenetically to
Firmicutes,
Actinobacteria,
Bacteroidetes,
α-,
β-, and
γ-Proteobacteria. Changes in the bacterial communities, from roots and substrate of each series, related to the plant species, hydraulic loading rates and along CW operation were examined using denaturating gradient gel electrophoresis (DGGE). The clustering analysis suggested that a diverse and distinct bacterial community inhabits each series, which was related to the type of plant present in each CW.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK, ZRSKP
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•We study variation in mobility measurements on organic films.•Values extracted by different scientists typically vary by about a factor of 3.•We propose a protocol that drastically ...reduces this variation.•Control of film thickness and electrode quality are also important factors.
Charge carrier mobility is a figure of merit commonly used to rate organic semiconducting materials for their suitability in applications such as solid-state lighting or photovoltaics. Although large variations are found in published mobility values on identical materials, there is little open discussion in the literature of the reproducibility of these results. We address this with an interlaboratory study of mobility measurements performed on a set of organic semiconductors using the space-charge limited current method. We found mobility measured on nominally identical devices could vary by more than one order of magnitude, with the largest sources of variation being poor electrodes and film thickness variation. Moreover, we found that mobility values extracted from identical data by different scientists would typically vary by a factor of 3. We propose a protocol for analysis and reporting that was found to reduce this analysis variation to as little as 20%. We also present general guidelines for improving the reproducibility of benchmark mobility measurements.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK
The current trend of increasing the electricity production from wind energy has led to the installation of wind farms in areas of greater orographic complexity, raising doubts on the use of simple, ...linear, mathematical models of the fluid flow equations, so common in the wind energy engineering. The present study shows how conventional techniques, linear models and cup anemometers, can be combined with flow simulation by computational fluid dynamics techniques (nonlinear models) and measurements by sonic anemometers, and discuss their relative merits in the characterisation of the wind over a coastal region—a cliff over the sea. The computational fluid dynamic techniques were particularly useful, providing a global view of the wind flow over the cliff and enabling the identification of separated flow regions, clearly unsuitable for installation of wind turbines. These locations display a pulsating flow, with periods between 1 and 7min, in agreement with sonic anemometer measurements, and both a turbulence intensity and a gust factor well above the wind turbine design conditions.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK
Shrinking natural habitats exposes some non-human primates to the risk of accidents associated with electrical transmission lines. We examined dead marmosets (
Callithrix penicillata
) collected in ...the region from January 2015 to April 2018 to determine the animals’ cause of death and for electrocuted animals we examined the locations the animals had died as well as the configuration of the power lines at these sites. We also recorded the sex of the animal, the body region affected, and characteristics of the injuries. We diagnosed electrocutions in 11% (
n
= 34) of the marmosets studied. Most of the affected animals were male (
n
= 22) with single or double sites of injury on the limbs. Animals were injured in urban (
n
= 26) and peri-urban (
n
= 8) areas on lower-voltage alternate current lines, and we detected no seasonality or hotspots of electrocution. Our findings suggest that movement along transmission lines composed of bundled conductors is a major factor in electrocutions of marmosets in the Federal District and surrounding areas. The planning of electrical power grid infrastructure should consider arboreal primates to prevent electrocutions.
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EMUNI, FIS, FZAB, GEOZS, GIS, IJS, IMTLJ, KILJ, KISLJ, MFDPS, NLZOH, NUK, OBVAL, OILJ, PNG, SAZU, SBCE, SBJE, SBMB, SBNM, UKNU, UL, UM, UPUK, VKSCE, ZAGLJ
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