Population health research is increasingly focused on the genetic determinants of healthy ageing, but there is no public resource of whole genome sequences and phenotype data from healthy elderly ...individuals. Here we describe the first release of the Medical Genome Reference Bank (MGRB), comprising whole genome sequence and phenotype of 2570 elderly Australians depleted for cancer, cardiovascular disease, and dementia. We analyse the MGRB for single-nucleotide, indel and structural variation in the nuclear and mitochondrial genomes. MGRB individuals have fewer disease-associated common and rare germline variants, relative to both cancer cases and the gnomAD and UK Biobank cohorts, consistent with risk depletion. Age-related somatic changes are correlated with grip strength in men, suggesting blood-derived whole genomes may also provide a biologic measure of age-related functional deterioration. The MGRB provides a broadly applicable reference cohort for clinical genetics and genomic association studies, and for understanding the genetics of healthy ageing.
We present TORAX, a new, open-source, differentiable tokamak core transport simulator implemented in Python using the JAX framework. TORAX solves the coupled equations for ion heat transport, ...electron heat transport, particle transport, and current diffusion, incorporating modular physics-based and ML models. JAX's just-in-time compilation ensures fast runtimes, while its automatic differentiation capability enables gradient-based optimization workflows and simplifies the use of Jacobian-based PDE solvers. Coupling to ML-surrogates of physics models is greatly facilitated by JAX's intrinsic support for neural network development and inference. TORAX is verified against the established RAPTOR code, demonstrating agreement in simulated plasma profiles. TORAX provides a powerful and versatile tool for accelerating research in tokamak scenario modeling, pulse design, and control.
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