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  • Apicomplexan-like parasites... Apicomplexan-like parasites are polyphyletic and widely but selectively dependent on cryptic plastid organelles
    Janouškovec, Jan; Paskerova, Gita G; Miroliubova, Tatiana S ... eLife, 08/2019, Volume: 8
    Journal Article
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    The phylum Apicomplexa comprises human pathogens such as but is also an under-explored hotspot of evolutionary diversity central to understanding the origins of parasitism and non-photosynthetic ...
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  • common red algal origin of ... common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids
    Janouškovec, Jan; Horák, Aleš; Oborník, Miroslav ... Proceedings of the National Academy of Sciences, 06/2010, Volume: 107, Issue: 24
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    Open access

    The discovery of a nonphotosynthetic plastid in malaria and other apicomplexan parasites has sparked a contentious debate about its evolutionary origin. Molecular data have led to conflicting ...
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  • A New Lineage of Eukaryotes... A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction
    Janouškovec, Jan; Tikhonenkov, Denis V.; Burki, Fabien ... Current biology, 12/2017, Volume: 27, Issue: 23
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    Open access

    The origin of eukaryotic cells represents a key transition in cellular evolution and is closely tied to outstanding questions about mitochondrial endosymbiosis 1, 2. For example, gene-rich ...
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  • Factors mediating plastid d... Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives
    Janouškovec, Jan; Tikhonenkov, Denis V.; Burki, Fabien ... Proceedings of the National Academy of Sciences - PNAS, 08/2015, Volume: 112, Issue: 33
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    Open access

    Apicomplexans are a major lineage of parasites, including causative agents of malaria and toxoplasmosis. How such highly adapted parasites evolved from free-living ancestors is poorly understood, ...
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  • Major transitions in dinofl... Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics
    Janouškovec, Jan; Gavelis, Gregory S.; Burki, Fabien ... Proceedings of the National Academy of Sciences - PNAS, 01/2017, Volume: 114, Issue: 2
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    Dinoflagellates are key species in marine environments, but they remain poorly understood in part because of their large, complex genomes, unique molecular biology, and unresolved in-group ...
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  • Phylogeny of Annelida (Loph... Phylogeny of Annelida (Lophotrochozoa): total-evidence analysis of morphology and six genes
    Zrzavý, Jan; Ríha, Pavel; Piálek, Lubomír ... BMC evolutionary biology, 08/2009, Volume: 9, Issue: 1
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    Annelida is one of the major protostome phyla, whose deep phylogeny is very poorly understood. Recent molecular phylogenies show that Annelida may include groups once considered separate phyla ...
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  • Evolution of red algal plas... Evolution of red algal plastid genomes: ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers
    Janouškovec, Jan; Liu, Shao-Lun; Martone, Patrick T ... PloS one, 03/2013, Volume: 8, Issue: 3
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    Red algae have the most gene-rich plastid genomes known, but despite their evolutionary importance these genomes remain poorly sampled. Here we characterize three complete and one partial plastid ...
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  • Chromerid genomes reveal th... Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites
    Woo, Yong H; Ansari, Hifzur; Otto, Thomas D ... eLife, 07/2015, Volume: 4
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    The eukaryotic phylum Apicomplexa encompasses thousands of obligate intracellular parasites of humans and animals with immense socio-economic and health impacts. We sequenced nuclear genomes of ...
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  • Divergent mitochondrial res... Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites
    Flegontov, Pavel; Michálek, Jan; Janouškovec, Jan ... Molecular biology and evolution, 05/2015, Volume: 32, Issue: 5
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    Four respiratory complexes and ATP-synthase represent central functional units in mitochondria. In some mitochondria and derived anaerobic organelles, a few or all of these respiratory complexes have ...
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  • A photosynthetic alveolate ... A photosynthetic alveolate closely related to apicomplexan parasites
    Carter, Dee A; Moore, Robert B; Oborník, Miroslav ... Nature, 02/2008, Volume: 451, Issue: 7181
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    Many parasitic Apicomplexa, such as Plasmodium falciparum, contain an unpigmented chloroplast remnant termed the apicoplast, which is a target for malaria treatment. However, no close relative of ...
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