Automatization of tree species identification in the field is crucial in improving forest-based bioeconomy, supporting forest management, and facilitating in situ data collection for remote sensing ...applications. However, tree species recognition has never been addressed with hyperspectral reflectance images of stem bark before. We investigated how stem bark texture differs between tree species using a hyperspectral camera set-up and gray level co-occurrence matrices and assessed the potential of using reflectance spectra and texture features of stem bark to identify tree species. The analyses were based on 200 hyperspectral reflectance data cubes (415-925 nm) representing ten tree species. There were subtle interspecific differences in bark texture. Using average spectral features in linear discriminant analysis classifier resulted in classification accuracy of 92-96.5%. Using spectral and texture features together resulted in accuracy of 93-97.5%. With a convolutional neural network, we obtained an accuracy of 94%. Our study showed that the spectral features of stem bark were robust for classifying tree species, but importantly, bark texture is beneficial when combined with spectral data. Our results suggest that in situ imaging spectroscopy is a promising sensor technology for developing accurate tree species identification applications to support remote sensing.
Foliage spectra form an important input to physically-based forest reflectance models. However, little is known about geographical variability of coniferous needle spectra. In this research note, we ...present an assessment of the geographical variability of Norway spruce ( (L.) H. Karst.) needle albedo, reflectance, and transmittance spectra across three study sites covering latitudes of 49â62°N in Europe. All spectra were measured and processed using exactly the same methodology and parameters, which guarantees reliable conclusions about geographical variability. Small geographical variability in Norway spruce needle spectra was observed, when compared to variability observed between previous measurement campaigns (employing slightly varying measurement and processing parameters), or to variability between plant functional types (broadleaved vs. coniferous). Our results suggest that variability of needle spectra is not a major factor introducing geographical variability to forest reflectance. The results also highlight the importance of harmonizing measurement protocols when collecting needle spectral libraries. Furthermore, the data collected for this study can be useful in studies where accurate information on spectral differences between broadleaved and coniferous tree foliage is needed.
Picea abies
Leaf reflectance and transmittance spectra are essential information in many applications such as developing remote sensing methods, computing shortwave energy balance (albedo) of forest canopies, ...and monitoring health or stress of trees. Measurement of coniferous needle spectra has usually been carried out with single integrating spheres, which has involved a lot of tedious manual work. A small double integrating sphere would make the measurements considerably faster, because of its ease of operation and small sample sizes required. Here we applied a compact double integrating sphere setup, used previously for measurement of broad leaves, for measurement of coniferous needles. Test measurements with the double integrating sphere showed relative underestimation of needle albedo by 5â39% compared to a well-established single integrating sphere setup. A small part of the bias can be explained by the bias of the single sphere. Yet the observed bias is quite significant if absolute accuracy of measurements is required. For relative measurements, e.g. for monitoring development of needle spectra over time, the double sphere system provides notable improvement. Furthermore, it might be possible to reduce the bias by building an optimized measurement setup that minimizes absorption losses in the sample port. Our study indicates that double spheres, after some technical improvement, may provide a new and fast way to collect extensive spectral libraries of tree species.
In this short communication, we present a pilot study testing a new close-range sensing technology – a portable, pushbroom hyperspectral camera – in varying field conditions in forests. We evaluate ...how measurement conditions affect the in situ collection of stem bark spectra. In situ spectral libraries of woody elements are needed in, e.g., physically-based remote sensing applications, biodiversity mapping, and 3D vegetation modeling. Recent technological advancements bring portable and close-range capable sensors, such as small pushbroom imaging spectrometers, for consumer and research use. However, it is important to investigate the strengths and limitations of sensors utilizing pushbroom technology. Spectral measurements under forest canopies are challenging due to varying illumination conditions, which can have a significant effect on the quality of the data. We acquired hyperspectral reflectance images of Norway spruce (Picea abies (L.) Karst), Scots pine (Pinus sylvestris L.), and silver birch (Betula pendula Roth) stem bark directly in the forest. For each tree we collected reflectance images at 30-minute intervals throughout a day from a fixed view angle. The most significant change in the measured spectra occurred due to spatially varying irradiance between the white reference panel and the bark surface. The spatial variation of irradiance had the largest effect on data quality in visible and red-edge regions, and the smallest in near-infrared. In non-diffuse conditions, changes in irradiance were often unpredictable as clouds or canopy elements moved in and out of the direct solar beams. Diffuse overcast days with clouds can extend the time window for measurements, making it a practical choice for acquiring hyperspectral images of stem bark. We concluded that with a well-planned measurement set-up it is possible to improve the precision of in situ collected spectra of stem bark.
•Testing a novel close-range sensing technology for monitoring tree bark properties.•A pilot on pushbroom hyperspectral imaging of stem bark in varying field conditions.•A robust measurement set-up improves precision of field-collected bark spectra.•Accounting for meteorological and radiation conditions during measurements.•A list of practical recommendations for measurements of bark spectra provided.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
•The p-theory was extended to account for non-green spectral signatures.•We corrected leaf-level illumination conditions of sunlit leaves using the extended p-theory and PROSPECT.•The illumination ...correction enabled accurate leaf reflectance retrieval in VNIR images.
Vegetation biophysical- and chemical traits, defined on the basis of leaf area, can be retrieved from their spectral reflectance. Ultra high resolution hyperspectral images, such as ones collected from drones, allows measuring the spectra of individual leaves. The reflectance signal of such data is calibrated with respect to the top-of-canopy (TOC) irradiance, as the local illumination conditions on leaf surfaces are largely unknown and can vary significantly from the TOC conditions. We developed an inversion algorithm that uses the PROSPECT leaf radiative transfer model and the theory of spectral invariants to retrieve the actual leaf reflectance from TOC-calibrated hyperspectral images. Compared with more traditional canopy reflectance models, this approach accounts for the spatial variation in leaf-level irradiance visible in sub-centimeter-resolution images and is computationally more efficient. We used simulated and measured leaf and canopy reflectance data to validate the approach and found the retrieved leaf reflectances to match closely the actual reflectances (relative RMSD was 12% for simulated data on the average and below 10% for measured data). The proposed method provides an efficient approach for illumination correction, enabling reliable, physically based applications for monitoring vegetation biochemical and biophysical properties from ultra-high-resolution spectral imagery.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
Lichens dominate a significant part of the Earth's land surface, and are valuable bioindicators of various environmental changes. In the northern hemisphere, the largest lichen biomass is in the ...woodlands and heathlands of the boreal zone and in tundra. Despite the global coverage of lichens, there has been only limited research on their spectral properties in the context of remote sensing of the environment. In this paper, we report spectral properties of 12 common boreal lichen species. Measurements of reflectance spectra were made in laboratory conditions with a standard spectrometer (350–2500 nm) and a novel mobile hyperspectral camera (400–1000 nm) which was used in a multiangular setting. Our results show that interspecific differences in reflectance spectra were the most pronounced in the ultraviolet and visible spectral range, and that dry samples always had higher reflectance than fresh (moist) samples in the shortwave infrared region. All study species had higher reflectance in the backward scattering direction compared to nadir or forward scattering directions. Our results also reveal, for the first time, that there is large intraspecific variation in reflectance of lichen species. This emphasizes the importance of measuring several replicates of each species when analyzing lichen spectra. In addition, we used the data in a spectral clustering analysis to study the spectral similarity between samples and species, and how these similarities could be linked to different physical traits or phylogenetic closeness of the species. Overall, our results suggest that spectra of some lichen species with large ground coverage can be used for species identification from high spatial resolution remote sensing imagery. On the other hand, for lichen species growing as small assemblages, mobile hyperspectral cameras may offer a solution for in-situ species identification. The spectral library collected in this study is available in the SPECCHIO Spectral Information System.
•Reflectance spectra of 12 boreal ground lichen species were measured.•Intraspecific variation in reflectance was large.•Interspecific differences in spectra were largest in ultraviolet and visible regions.•All species had highest reflectance in backscattering direction.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
•Understory spectra (350-2300 nm) and fractional cover from 36 boreal forest stands.•Spectral characteristics of understory linked to fractional cover and site fertility.•Spectra beyond the ...conventional VIS-NIR region may improve understory monitoring.
Modern satellite and airborne optical images have increasingly higher resolutions and enable the study of all layers of forests, not just the forest canopy. To understand the contribution of different types of understory on the overall spectral reflectance signal, ground reference data are needed from different types of forests. In this paper, we present the analysis of spectral reflectance factors (350-2300 nm) and fractional covers of understory from 36 boreal forest stands. The data were collected during peak growing season in a southern boreal forest area in Finland. The study stands represent four different forest site fertility types. We used a spectrometer to measure understory spectra in nadir and vegetation quadrats to estimate fractional cover. We showed that the understory has specific spectral features related to the site fertility type and fractional cover. Our results suggest that remote sensing can be used to differentiate forest site fertility types and estimate understory green fractional cover in northern European boreal forests. The collected data are openly available in an open data repository.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
The woody material of forest canopies has a significant effect on the total forest reflectance and on the interpretation of remotely sensed data, yet research on the spectral properties of bark has ...been limited. We developed a novel measurement setup for acquiring stem bark reflectance spectra in field conditions, using a mobile hyperspectral camera. The setup was used for stem bark reflectance measurements of ten boreal and temperate tree species in the visible (VIS) to near‐infrared (NIR) (400–1000 nm) wavelength region. Twenty trees of each species were measured, constituting a total of 200 hyperspectral reflectance images. The mean bark spectra of species were similar in the VIS region, and the interspecific variation was largest in the NIR region. The intraspecific variation of bark spectra was high for all studied species from the VIS to the NIR region. The spectral similarity of our study species did not correspond to the general phylogenetic lineages. The hyperspectral reflectance images revealed that the distributions of per‐pixel reflectance values within images were species‐specific. The spectral library collected in this study contributes toward building a comprehensive understanding of the spectral diversity of forests needed not only in remote sensing applications but also in, for example, biodiversity or land surface modeling studies.
The woody material of forest canopies has a significant effect on the total forest reflectance and on the interpretation of remotely sensed data, yet research on the spectral properties of bark has been limited. In this paper, we pioneered a new measurement method in quantifying intra‐ and interspecific differences in tree bark spectra of ten common boreal and temperate tree species. We also examined if such spectral information is linked to the taxonomic relatedness of the studied tree species.
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FZAB, GIS, IJS, KILJ, NLZOH, NUK, OILJ, SBCE, SBMB, UL, UM, UPUK
Despite the importance of spectral properties of woody tree structures, they are seldom represented in research related to forests, remote sensing, and reflectance modeling. This study presents a ...novel imaging multiangular measurement set-up that utilizes a mobile handheld hyperspectral camera (Specim IQ, 400â1000 nm), and can measure stem bark spectra in a controlled laboratory setting. We measured multiangular reflectance spectra of silver birch ( Roth), Scots pine ( L.) and Norway spruce ( (L.) Karst.) stem bark, and demonstrated the potential of using bark spectra in identifying tree species using a Support Vector Machine (SVM) based approach. Intraspecific reflectance variability was the lowest in visible (400â700 nm), and the highest in near-infrared (700â1000 nm) wavelength regions. Interspecific variation was the largest in the red, red-edge and near-infrared spectral bands. Spatial variation of reflectance along the tree height and different sides of the stem (north and south) were found. Both birch and pine had increased reflectance in the forward-scattering directions for visible to near-infrared wavelength regions, whilst spruce displayed the same only for the visible wavelength region. In addition, spruce had increased reflectance in the backward-scattering directions. In spite of the intraspecific variations, SVM could identify tree species with 88.8% overall accuracy when using pixel-specific spectra, and with 97.2% overall accuracy when using mean spectra per image. Based on our results it is possible to identify common boreal tree species based on their stem bark spectra using images from mobile hyperspectral cameras.
Betula pendula
Pinus sylvestris
Picea abies
•Analyses of links between forest floor light availability and spectral properties.•Data from temperate and boreal forests across Europe.•Tree canopy structure linked to forest floors’ spectral ...features and composition.•Mean reflectance curves of the forest floors differed between biomes.
Remote sensing using spectral data has been commonly applied to retrieve tree layer properties while the monitoring of forest floor remains a less studied topic. We investigated the links between light availability at forest floor, and forest floor's spectral reflectance properties (350–2500 nm) and fractional cover across boreal and temperate Europe. We hypothesized that tree canopy structure (and thus, light availability at forest floor) is linked not only to the vegetation composition of forest floor, as has been shown previously, but also to forest floor's spectral reflectance properties, and that these relationships differ between forest biomes. Data were collected in situ from a total of 67 forest stands in southern boreal, hemiboreal, temperate floodplain, and temperate mountain sites. The variation of light availability at forest floor was linked to both the forest floor's composition and spectral reflectance properties. Each study site exhibited site-specific spectral features and a different mean reflectance spectrum. Openness in tree canopies was related to an increase in the fractional cover of vascular plants and to a decrease of plant litter, consequently enhancing the forest floors’ spectral absorptance features in the red and shortwave-infrared wavelengths, as well as reflectance in the near-infrared region. Also, the variations of normalized difference index values and red edge positions as functions light availability at forest floor and forest floor's composition were different for each site. Our results suggest that incorporating biome-specific relationships between tree canopy structure and forest floor reflectance properties would improve interpretation of optical remote sensing data. The measurement data are openly available.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
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