The cyanobacterial phylum encompasses oxygenic photosynthetic prokaryotes of a great breadth of morphologies and ecologies; they play key roles in global carbon and nitrogen cycles. The chloroplasts ...of all photosynthetic eukaryotes can trace their ancestry to cyanobacteria. Cyanobacteria also attract considerable interest as platforms for “green” biotechnology and biofuels. To explore the molecular basis of their different phenotypes and biochemical capabilities, we sequenced the genomes of 54 phylogenetically and phenotypically diverse cyanobacterial strains. Comparison of cyanobacterial genomes reveals the molecular basis for many aspects of cyanobacterial ecophysiological diversity, as well as the convergence of complex morphologies without the acquisition of novel proteins. This phylum-wide study highlights the benefits of diversity-driven genome sequencing, identifying more than 21,000 cyanobacterial proteins with no detectable similarity to known proteins, and foregrounds the diversity of light-harvesting proteins and gene clusters for secondary metabolite biosynthesis. Additionally, our results provide insight into the distribution of genes of cyanobacterial origin in eukaryotic nuclear genomes. Moreover, this study doubles both the amount and the phylogenetic diversity of cyanobacterial genome sequence data. Given the exponentially growing number of sequenced genomes, this diversity-driven study demonstrates the perspective gained by comparing disparate yet related genomes in a phylum-wide context and the insights that are gained from it.
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BFBNIB, NMLJ, NUK, PNG, SAZU, UL, UM, UPUK
Summary
Background Ulcerative colitis (UC) can be maintained in remission with 5‐aminosalicylic acid (5‐ASA) medications, but frequent non‐adherence by patients who are feeling well has been ...associated with more frequent flares of colitis.
Aim To perform a systematic review of the published literature and unpublished randomized clinical trials (RCTs) regarding the impact of non‐adherence with 5‐ASA medications on the incidence of UC flares and costs of care.
Methods A search of MEDLINE, EMBASE and the Cochrane databases was performed. Prospective studies of UC maintenance with 5‐ASAs in adults were selected if they included data on adherence and disease flares. Studies using insurance claims data to estimate the impact of non‐adherence on cost of care were included. Data from unpublished RCTs were obtained from the FDA with a request under the Freedom of Information Act.
Results The relative risk for flare in non‐adherent vs. adherent patients ranged from 3.65 to infinity. Data were obtained from six unpublished 5‐ASA RCTs, but none measured the impact of adherence on disease activity. The comorbidity‐adjusted annual costs of care in adherent patients were 12.5% less than in non‐adherent patients, despite increased medication expenditures.
Conclusions A substantial proportion of UC flares and medical costs of UC are attributable to 5‐ASA non‐adherence. As non‐adherence to 5‐ASA medications is common, cost‐effective strategies to improve adherence are needed. The impact of adherence on disease activity should be measured in RCTs of all inflammatory bowel disease treatments.
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BFBNIB, DOBA, FZAB, GIS, IJS, IZUM, KILJ, NLZOH, NUK, OILJ, PILJ, PNG, SAZU, SBCE, SBMB, SIK, UILJ, UKNU, UL, UM, UPUK
Aims.
We aim to determine whether dissociative excitation of cometary neutrals by electron impact is the major source of far-ultraviolet (FUV) emissions at comet 67P/Churyumov-Gerasimenko in the ...southern hemisphere at large heliocentric distances, both during quiet conditions and impacts of corotating interaction regions observed in the summer of 2016.
Methods.
We combined multiple datasets from the Rosetta mission through a multi-instrument analysis to complete the first forward modelling of FUV emissions in the southern hemisphere of comet 67P and compared modelled brightnesses to observations with the Alice FUV imaging spectrograph. We modelled the brightness of OI1356, OI1304, Lyman-
β
, CI1657, and CII1335 emissions, which are associated with the dissociation products of the four major neutral species in the coma: CO
2
, H
2
O, CO, and O
2
. The suprathermal electron population was probed by the Ion and Electron Sensor of the Rosetta Plasma Consortium and the neutral column density was constrained by several instruments: the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis (ROSINA), the Microwave Instrument for the Rosetta Orbiter and the Visual InfraRed Thermal Imaging Spectrometer.
Results.
The modelled and observed brightnesses of the FUV emission lines agree closely when viewing nadir and dissociative excitation by electron impact is shown to be the dominant source of emissions away from perihelion. The CII1335 emissions are shown to be consistent with the volume mixing ratio of CO derived from ROSINA. When viewing the limb during the impacts of corotating interaction regions, the model reproduces brightnesses of OI1356 and CI1657 well, but resonance scattering in the extended coma may contribute significantly to the observed Lyman-
β
and OI1304 emissions. The correlation between variations in the suprathermal electron flux and the observed FUV line brightnesses when viewing the comet’s limb suggests electrons are accelerated on large scales and that they originate in the solar wind. This means that the FUV emissions are auroral in nature.
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A prospective longitudinal design was employed to ascertain whether different types of behavioral inhibition (i.e., traditional, peer-social) were stable from toddler to preschool age, and whether ...inhibited temperament and/or parenting style would predict children's subsequent social and behavioral problems. At Time 1, 108 toddlers (54 males, 54 females) and their mothers were observed in the Traditional Inhibition Paradigm and in a toddler-peer session; then at age 4 years, 88 children were observed with unfamiliar peers, and maternal ratings of psychological functioning were obtained. How mothers and their toddlers interacted was also observed. Results revealed meaningful connections between toddler inhibition, maternal intrusive control and derision, and nonsocial behaviors at age 4. Both forms of toddler inhibition predicted socially reticent behavior during free play at 4 years. If mothers demonstrated relatively high frequencies of intrusive control and/or derisive comments, then the association between their toddlers' peer inhibition and 4-year social reticence was significant and positive; whereas if mothers were neither intrusive nor derisive, then toddlers' peer inhibition and 4-year reticence were not significantly associated. Thus, maternal behaviors moderated the relation between toddlers' peer inhibition and preschoolers' social reticence.
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BFBNIB, DOBA, FZAB, GIS, IJS, IZUM, KILJ, NLZOH, NMLJ, NUK, OILJ, PILJ, PNG, SAZU, SBCE, SBMB, SIK, UILJ, UKNU, UL, UM, UPUK
The Gene Ontology (GO) project (http://www. geneontology.org/) provides structured, controlled vocabularies and classifications that cover several domains of molecular and cellular biology and are ...freely available for community use in the annotation of genes, gene products and sequences. Many model organism databases and genome annotation groups use the GO and contribute their annotation sets to the GO resource. The GO database integrates the vocabularies and contributed annotations and provides full access to this information in several formats. Members of the GO Consortium continually work collectively, involving outside experts as needed, to expand and update the GO vocabularies. The GO Web resource also provides access to extensive documentation about the GO project and links to applications that use GO data for functional analyses.
The feral horses of Sable Island are a geographically isolated population located ∼160 km off the east coast of Nova Scotia, Canada. Because these horses have no contact with domestic animals, have ...minimal contact with people, and have never received antimicrobials, they offer a unique opportunity to study the dissemination of antimicrobial resistance in unmanaged populations. As part of an ongoing multidisciplinary and individual-based monitoring program, we collected feces from 508 geolocalized horses (92% of the total population) between July and September 2014. We selectively cultured Escherichia coli on MacConkey and CHROMagar ESBL media. Antimicrobial susceptibilities were determined, and organisms resistant to β-lactam antimicrobials were screened for β-lactamase genes by PCR. Escherichia coli was recovered from 146 (28.7%) individuals, and the majority of isolates (97%) were susceptible to all drugs tested. Resistance to tetracycline was most common, including organisms isolated from 4 (2.7%) of the colonized horses. A single isolate resistant to ampicillin, ceftriaxone, and ceftiofur was identified, which possessed the CTX-M-1 gene. Our findings demonstrate that although antimicrobial resistance is not common in this remote population, clinically relevant resistance genes are present.
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For over a century, the negative exponential relationship of tree density to diameter has been observed and considered an indicator of equilibrium forest structure, especially at the stand level. ...More recent studies have suggested that other forms of diameter distributions should be considered “balanced”. Some of these seemingly contradictory findings can be resolved by understanding the impacts of scale and sampling area on the possibility of observing a negative exponential distribution. We calculated the minimum area required to sample the smallest number of trees necessary to produce hypothetical negative exponential distributions. The minimum area is influenced greatly by the maximum diameter and the exponential decrease rate of the distribution. It is also influenced by the width of diameter classes used to summarize the data, and the basal area per hectare of the sample. These differences in minimum required sampling area are important considerations because some recent studies that suggest a rotated sigmoid distribution, rather than negative exponential, is more characteristic of old-growth forests may have used sampling schemes that were insufficient to observe a negative exponential distribution even if one existed. Others have used criteria in selecting sampling locations that ensure a high density of large trees, thereby precluding them from observing a negative exponential distribution even if one existed. Our review suggests that within-stand sampling areas for testing diameter distribution in temperate forests typically need to exceed 1
ha, especially in mature to old-growth stages, though mortality rate, diameter class width, and total stand basal area all affect the area or number of prism points needed. Diameter distributions have rarely been assessed at the landscape scale. Nonetheless, it is reasonable to expect that landscape distributions may generally be negative exponential and the slope of the line (i.e. the mortality rate) may be an important measure of landscape dynamics. Old-growth landscapes where natural disturbances are typically small patches will have a lower mortality rate than those where disturbances are more frequent and widespread.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK
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