The immobile nature of plants means that they can be frequently confronted by various biotic and abiotic stresses during their lifecycle. Among the various abiotic stresses, water stress, temperature ...extremities, salinity, and heavy metal toxicity are the major abiotic stresses challenging overall plant growth. Plants have evolved complex molecular mechanisms to adapt under the given abiotic stresses. Long non-coding RNAs (lncRNAs)-a diverse class of RNAs that contain > 200 nucleotides(nt)-play an essential role in plant adaptation to various abiotic stresses.
LncRNAs play a significant role as 'biological regulators' for various developmental processes and biotic and abiotic stress responses in animals and plants at the transcription, post-transcription, and epigenetic level, targeting various stress-responsive mRNAs, regulatory gene(s) encoding transcription factors, and numerous microRNAs (miRNAs) that regulate the expression of different genes. However, the mechanistic role of lncRNAs at the molecular level, and possible target gene(s) contributing to plant abiotic stress response and adaptation, remain largely unknown. Here, we review various types of lncRNAs found in different plant species, with a focus on understanding the complex molecular mechanisms that contribute to abiotic stress tolerance in plants. We start by discussing the biogenesis, type and function, phylogenetic relationships, and sequence conservation of lncRNAs. Next, we review the role of lncRNAs controlling various abiotic stresses, including drought, heat, cold, heavy metal toxicity, and nutrient deficiency, with relevant examples from various plant species. Lastly, we briefly discuss the various lncRNA databases and the role of bioinformatics for predicting the structural and functional annotation of novel lncRNAs.
Understanding the intricate molecular mechanisms of stress-responsive lncRNAs is in its infancy. The availability of a comprehensive atlas of lncRNAs across whole genomes in crop plants, coupled with a comprehensive understanding of the complex molecular mechanisms that regulate various abiotic stress responses, will enable us to use lncRNAs as potential biomarkers for tailoring abiotic stress-tolerant plants in the future.
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DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
▶ Water crisis and escalating labour costs are threatening rice production. ▶·Because of its low-input demand, direct seeded rice is an attractive alternative. ▶·Early-maturing varieties, weed and ...nutrient management favour its adoption. ▶ Weeds, blast, lodging, poor kernel quality and low yields are the major challenges. ▶·Experiences, problems and opportunities of direct seeded rice have been discussed.
Rice is one of the most important food crops in the world, and staple for more than half of the global population. Looming water crisis, water-intensive nature of rice cultivation and escalating labour costs drive the search for alternative management methods to increase water productivity in rice cultivation. Direct seeded rice (DSR) has received much attention because of its low-input demand. It involves sowing pre-germinated seed into a puddled soil surface (wet seeding), standing water (water seeding) or dry seeding into a prepared seedbed (dry seeding). In Europe, Australia and the United States, DSR is highly mechanised. The development of early-maturing varieties and improved nutrient management techniques along with increased availability of chemical weed control methods has encouraged many farmers in the Philippines, Malaysia, Thailand and India to switch from transplanted to DSR culture. This shift should substantially reduce crop water requirements, soil organic-matter turnover, nutrient relations, carbon sequestering, weed biota and greenhouse-gas emissions. Still, weed infestation can cause large yield losses in DSR. In addition, recent incidences of blast disease, crop lodging, impaired kernel quality and stagnant yields across the years are major challenges in this regard. In this review, we discuss the experiences, potential advantages and problems associated with DSR, and suggest likely future patterns of changes in rice cultivation.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK
No-tillage with stubble retention is a widely used cropping system for its conservation and yield benefits. The no-tillage farming system in southern Australia relies heavily on herbicides for weed ...management, but heavy crop residues may have a negative impact on the activity of pre-emergent herbicides applied. Any herbicide intercepted by the crop residue may not reach the soil surface without timely rainfall and may dissipate due to volatilisation, photo-degradation and/or microbial activity. Two experiments were carried out to investigate the interception of prosulfocarb, pyroxasulfone, and trifluralin herbicides by wheat residue and retention following simulated rainfall. For the first experiment, there were four simulated rainfall amounts (0, 5, 10, and 20 mm), three intensities (5, 10, and 20 mm h-1) and five application times (immediately after spraying herbicide, 6 h, 1, 7, and 14 days after spraying). In the second experiment, 20 mm of rainfall was applied at 10 mm h-1 in either 4 × 5 mm rainfall events over two days, 2 × 10 mm rainfall events over one day, or a single 20 mm rainfall event, with a no-rainfall control treatment. Bioassays were used to assess the herbicide activity/availability in the soil and remaining on the residue, using cucumber (Cucumis sativus L.) and Italian ryegrass (Lolium multiflorum Lam.) as indicator plants. At higher rainfall amounts, most of the herbicide leached from the stubble into the soil soon after application; more so with rain in one event rather than multiple events. However, the intensity of rainfall had no effect. Pyroxasulfone leached easily from the residue to the soil to potentially offer good weed control, prosulfocarb had an intermediary leaching effect, while only a small amount of trifluralin leached from stubble after rain. Therefore, in no-tillage situations with large amounts of crop residue present on the soil surface, herbicides that leach easily from the residue should be considered, like pyroxasulfone.
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DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
The present study tested the efficacy of 24-epibrassinolide (EBL) and calcium (Ca) for mediating salinity tolerance in tomato. Salinity stress affected the morphological parameters of tomato as well ...as leaf relative water content (LRWC), photosynthetic and accessory pigments, leaf gas exchange parameters, chlorophyll fluorescence and the uptake of essential macronutrients. The salt (NaCl) treatment induced oxidative stress in the form of increased Na
ion concentration by 146%, electrolyte leakage (EL) by 61.11%, lipid peroxidation (MDA) 167% and hydrogen peroxide (H
O
) content by 175%. Salt stress also enhanced antioxidant enzyme activities including those in the ascorbate-glutathione cycle. Plants treated with EBL or Ca after salt exposure mitigated the ill effects of salt stress, including oxidative stress, by reducing the uptake of Na
ions by 52%. The combined dose of EBL + Ca reversed the salt-induced changes through an elevated pool of enzymes in the ascorbate-glutathione cycle, other antioxidants (superoxide dismutase, catalase), and osmoprotectants (proline, glycine betaine). Exogenously applied EBL and Ca help to optimize mineral nutrient status and enable tomato plants to tolerate salt toxicity. The ability of tomato plants to tolerate salt stress when supplemented with EBL and Ca was attributed to modifications to enzymatic and non-enzymatic antioxidants, osmolytes and metabolites.
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IZUM, KILJ, NUK, PILJ, PNG, SAZU, UL, UM, UPUK
Chickpea is an important food legume crop with high protein levels that is widely grown in rainfed areas prone to drought stress. Using an integrated approach, we describe the relative changes in ...some physiological parameters and the proteome of a drought-tolerant (MCC537, T) and drought-sensitive (MCC806, S) chickpea genotype.
Under progressive dehydration stress, the T genotype relied on a higher relative leaf water content after 3 and 5 d (69.7 and 49.3%) than the S genotype (59.7 and 40.3%) to maintain photosynthetic activities and improve endurance under stress. This may have been facilitated by greater proline accumulation in the T genotype than the S genotype (14.3 and 11.1 μmol g
FW at 5 d, respectively). Moreover, the T genotype had less electrolyte leakage and lower malondialdehyde contents than the S genotype under dehydration stress, indicating greater membrane stability and thus greater dehydration tolerance. The proteomic analysis further confirmed that, in response to dehydration, the T genotype activated more proteins related to photosynthesis, stress response, protein synthesis and degradation, and gene transcription and signaling than the S genotype. Of the time-point dependent proteins, the largest difference in protein abundance occurred at 5 d, with 29 spots increasing in the T genotype and 30 spots decreasing in the S genotype. Some of the identified proteins-including RuBisCo, ATP synthase, carbonic anhydrase, psbP domain-containing protein, L-ascorbate peroxidase, 6-phosphogluconate dehydrogenase, elongation factor Tu, zinc metalloprotease FTSH 2, ribonucleoproteins and auxin-binding protein-may play a functional role in drought tolerance in chickpea.
This study highlights the significance of genotype- and time-specific proteins associated with dehydration stress and identifies potential resources for molecular drought tolerance improvement in chickpea.
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DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Metabolic regulation is the key mechanism implicated in plants maintaining cell osmotic potential under drought stress. Understanding drought stress tolerance in plants will have a significant impact ...on food security in the face of increasingly harsh climatic conditions. Plant primary and secondary metabolites and metabolic genes are key factors in drought tolerance through their involvement in diverse metabolic pathways. Physio-biochemical and molecular strategies involved in plant tolerance mechanisms could be exploited to increase plant survival under drought stress. This review summarizes the most updated findings on primary and secondary metabolites involved in drought stress. We also examine the application of useful metabolic genes and their molecular responses to drought tolerance in plants and discuss possible strategies to help plants to counteract unfavorable drought periods.
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As the abundance of microplastics and nanoplastics (MPs/NPs) increases in the environment, their presence in agricultural soil has become of interest. MPs/NPs can affect soil physical and chemical ...properties and be absorbed by plants and soil animals, causing physical and chemical damage. Soil MPs exceeding a certain concentration cause significant harm. Therefore, the extraction and identification of MPs in soil are vital for determining soil pollution. However, soils contain many other particles of similar size to MPs/NPs, making it more difficult to distinguish them than in water bodies. No standardized extraction and identification method is available to quantify MPs/NPs in soil. Various methods have been described in the literature, but they involve many different procedures for sampling, purification, digestion, and identification. This paper reviews extraction and identification methods for MPs/NPs in soil, sediment, and water and summarizes agricultural soil sampling and preservation, MPs/NPs separation, organic matter removal, and MPs/NPs identification. We also compare the advantages and disadvantages of existing methods and propose future research topics.
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•Made recommendations for extraction and identification of NPs.•Compared the advantages and disadvantages of various methods.•Provided the basic operation process for extraction and identification of MPs/NPs.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
The present study identified inverse relationships between nickel (Ni) levels and growth, photosynthesis and physio-biochemical attributes, but increasing levels of Ni stress enhanced methylglyoxal, ...electrolyte leakage, hydrogen peroxide, and lipid peroxidation content. Exogenous application of salicylic acid (SA) (10−5 M) ameliorated the ill-effects of Ni by restoring growth, photosynthesis and physio-biochemical attributes and increasing the activities of enzymes associated with antioxidant systems, especially the ascorbate–glutathione (AsA–GSH) cycle and glyoxalase system. In addition, SA application to Ni-stressed plants had an additive effect on the activities of the ascorbate and glutathione pools, and the AsA–GSH cycle enzymes (ascorbate peroxidase, monodehydroascorbate reductase, dehydroascorbate reductase, glutathione reductase), superoxide dismutase, catalase, glutathione S-transferase, and osmolyte biosynthesis). This trend also follows in glyoxalase system viz. glyoxalase I and glyoxalase II enzymes. Nevertheless, exogenous SA supplementation restored mineral nutrient contents. Principal component analysis showed that growth, photosynthesis, and mineral nutrient parameters were positively correlated with each other and negatively correlated with antioxidant enzymes and oxidative stress biomarkers. Hence, SA is an alternative compound with potential application in the phytoremediation of Ni.
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•Salicylic acid (SA) ameliorated the nickel (Ni) oxidative stress.•SA modulated physio-biochemical attributes.•SA triggered up-regulation of antioxidant defense and glyoxalase systems.•SA improved growth and photosynthesis in mustard plants.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
High temperatures and decreased rainfall are detrimental to yield in chickpea (Cicer arietinum L.), particularly during grain filling. This study aimed to (i) assess the individual and combined ...effects of drought and heat stress on biochemical seed-filling processes, (ii) determine genotypic differences in heat and drought tolerance, and (iii) determine any cross-tolerance. Plants were grown outdoors in the normal growing season when temperatures during seed filling were <32-20°C or were planted late (temperatures >32-20°C; heat stress). Half of the pots were kept adequately watered throughout, but water was withheld from the others from the initiation of seed filling until the relative leaf water content reached 50% of the irrigated plants (drought stress); all plants were rewatered thereafter until seed maturit. Water was withheld for 13 days (normal sowing) and 7 days (late sowing), so soil moisture decreased by 54–57%. Tests on leaves and seeds were performed after the stress. Individual and combined stress damaged membranes, and decreased cellular oxidising ability, stomatal conductance, PSII function and leaf chlorophyll content; damage was greater under combined stress. Leaf Rubisco activity increased with heat stress, decreased with drought stress and decreased severely with combined stress. Sucrose and starch concentrations decreased in all seeds through reductions in biosynthetic enzymes; reductions were greater under combined stress. These effects were more severe in heat- and drought-sensitive genotypes compared with drought-tolerant genotypes. Drought stress had a greater effect than heat stress on yield and the biochemical seed-filling mechanisms. Drought- and heat-tolerant genotypes showed partial cross-tolerance.
Grain quality and composition in food legumes are influenced by abiotic stresses. This review discusses the influence of abiotic stresses on grain composition and quality in food grains. Grain ...protein declines under salt stress due to the restricted absorption of nitrate from the soil solution. Grain phosphorus, nitrogen, and potassium contents declined whereas sodium and chloride increased. However, under drought, grain protein increased whereas the oil contents were decreased. For example, among fatty acids, oleic acid content increased; however, linoleic and/or linolenic acids were decreased under drought. Heat stress increased grain oil content whereas grain protein was decreased. Low temperature during late pod-filling reduced starch, protein, soluble sugar, fat, and fiber contents. However, an elevated CO2 level improved omega-3 fatty acid content at the expense of omega-6 fatty acids. Crop management and improvement strategies, next generation sequencing, and gene manipulation can help improve quality of food legumes under abiotic stresses.
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IJS, KILJ, NUK, PNG, UL, UM, UPUK
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