Fire shapes the distribution of savanna and forest through complex interactions involving climate, resources and species traits. Based on data from central Brazil, we propose that these interactions ...are governed by two critical thresholds. The fire‐resistance threshold is reached when individual trees have accumulated sufficient bark to avoid stem death, whereas the fire‐suppression threshold is reached when an ecosystem has sufficient canopy cover to suppress fire by excluding grasses. Surpassing either threshold is dependent upon long fire‐free intervals, which are rare in mesic savanna. On high‐resource sites, the thresholds are reached quickly, increasing the probability that savanna switches to forest, whereas low‐resource sites are likely to remain as savanna even if fire is infrequent. Species traits influence both thresholds; saplings of savanna trees accumulate bark thickness more quickly than forest trees, and are more likely to become fire resistant during fire‐free intervals. Forest trees accumulate leaf area more rapidly than savanna trees, thereby accelerating the transition to forest. Thus, multiple factors interact with fire to determine the distribution of savanna and forest by influencing the time needed to reach these thresholds. Future work should decipher multiple environmental controls over the rates of tree growth and canopy closure in savanna.
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BFBNIB, FZAB, GIS, IJS, KILJ, NLZOH, NUK, OILJ, SAZU, SBCE, SBMB, UL, UM, UPUK
Coastal redwood (Sequoia sempervirens), the world's tallest tree species, rehydrates leaves via foliar water uptake during fog/rain events. Here we examine if bark also permits water uptake in ...redwood branches, exploring potential flow mechanisms and biological significance. Using isotopic labelling and microCT imaging, we observed that water entered the xylem via bark and reduced tracheid embolization. Moreover, prolonged bark wetting (16 h) partially restored xylem hydraulic conductivity in isolated branch segments and whole branches. Partial hydraulic recovery coincided with an increase in branch water potential from about −5.5 ± 0.4 to −4.2 ± 0.3 MPa, suggesting localized recovery and possibly hydraulic isolation. As bark water uptake rate correlated with xylem osmotic potential (R² = 0.88), we suspect a symplastic role in transferring water from bark to xylem. Using historical weather data from typical redwood habitat, we estimated that bark and leaves are wet more than 1000 h per year on average, with over 30 events being sufficiently long (>24 h) to allow for bark‐assisted hydraulic recovery. The capacity to uptake biologically meaningful volumes of water via bark and leaves for localized hydraulic recovery throughout the crown during rain/fog events might be physiologically advantageous, allowing for relatively constant transpiration.
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BFBNIB, FZAB, GIS, IJS, KILJ, NLZOH, NUK, OILJ, SAZU, SBCE, SBMB, UL, UM, UPUK
Background
It is well established that the functioning of terrestrial ecosystems depends on biophysical and biogeochemical feedbacks occurring at the soil-plant-atmosphere (SPA) interface. However, ...dynamic biophysical and biogeochemical processes that operate at local scales are seldom studied in conjunction with structural ecosystem properties that arise from broad environmental constraints. As a result, the effect of SPA interactions on how ecosystems respond to, and exert influence on, the global environment remains difficult to predict.
Scope
We review recent findings that link structural and functional SPA interactions and evaluate their potential for predicting ecosystem responses to chronic environmental pressures. Specifically, we propose a quantitative framework for the integrated analysis of three major plant functional groups (evergreen conifers, broadleaf deciduous, and understory shrubs) and their distinct mycorrhizal symbionts under rising levels of carbon dioxide, changing climate, and disturbance regime. First, we explain how symbiotic and competitive strategies involving plants and soil microorganisms influence scale-free patterns of carbon, nutrient, and water use from individual organisms to landscapes. We then focus on the relationship between those patterns and structural traits such as specific leaf area, leaf area index, and soil physical and chemical properties that constrain root connectivity and canopy gas exchange. Finally, we use those relationships to predict how changes in ecosystem structure may affect processes that are important for climate stability.
Conclusions
On the basis of emerging ecological theory and empirical biophysical and biogeochemical knowledge, we propose ten interpretive hypotheses that serve as a primary set of hierarchical relationships (or scaling rules), by which local SPA interactions can be spatially and temporally aggregated to inform broad climate change mitigation efforts. To this end, we provide a series of numerical formulations that simplify the net outcome of complex SPA interactions as a first step towards anticipating shifts in terrestrial carbon, water, and nutrient cycles.
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DOBA, EMUNI, FIS, FZAB, GEOZS, GIS, IJS, IMTLJ, IZUM, KILJ, KISLJ, MFDPS, NLZOH, NUK, OILJ, PILJ, PNG, SAZU, SBCE, SBJE, SBMB, SBNM, UILJ, UKNU, UL, UM, UPUK, VKSCE, ZAGLJ
Amazonian Dark Earths (ADEs) are unusually fertile soils characterised by elevated concentrations of microscopic charcoal particles, which confer their distinctive colouration. Frequent occurrences ...of pre-Columbian artefacts at ADE sites led to their ubiquitous classification as Anthrosols (soils of anthropic origin). However, it remains unclear how indigenous peoples created areas of high fertility in one of the most nutrient-impoverished environments on Earth. Here, we report new data from a well-studied ADE site in the Brazilian Amazon, which compel us to reconsider its anthropic origin. The amounts of phosphorus and calcium-two of the least abundant macronutrients in the region-are orders of magnitude higher in ADE profiles than in the surrounding soil. The elevated levels of phosphorus and calcium, which are often interpreted as evidence of human activity at other sites, correlate spatially with trace elements that indicate exogenous mineral sources rather than in situ deposition. Stable isotope ratios of neodymium, strontium, and radiocarbon activity of microcharcoal particles also indicate exogenous inputs from alluvial deposition of carbon and mineral elements to ADE profiles, beginning several thousands of years before the earliest evidence of soil management for plant cultivation in the region. Our data suggest that indigenous peoples harnessed natural processes of landscape formation, which led to the unique properties of ADEs, but were not responsible for their genesis. If corroborated elsewhere, this hypothesis would transform our understanding of human influence in Amazonia, opening new frontiers for the sustainable use of tropical landscapes going forward.
This work aims to evaluate the chemical composition, in vitro antioxidant capacity, and in vivo antitumoral activity of S. guianensis essential oil against Ehrlich's ascitic carcinoma and the effects ...on oxidative stress. The animals (Mus musculus) received a daily dose of S. guianensis oil orally (100 mg/kg) for 9 days. The main constituents of essential oil were curzerenone (16.4±1.5 %), drimenol (13.7±0.2 %), and spathulenol (12.4±0.8 %). S. guianensis oil showed antioxidant activity, inhibiting 11.1 % of DPPH radicals (95.7 mgTE/g); and 15.5 % of the β‐carotene peroxidation. The group treated with S. guianensis showed a significant reduction in tumor cells (59.76±12.33) compared to the tumor group (96.88±19.15). Essential oil of S. guianensis decreased MDA levels and increased SOD levels in liver tissue. The essential oil of S. guianensis reduced oxidative stress, and showed antitumor and antioxidant activity, being characterized as a new chemical profile in the investigation of pathologies such as cancer.
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BFBNIB, FZAB, GIS, IJS, KILJ, NLZOH, NUK, OILJ, SAZU, SBCE, SBMB, UL, UM, UPUK
Aim: Rising atmospheric CO₂ and climate warming have induced changes in tree growth and intrinsic water-use efficiency (iWUE) world-wide, but the long-term impact of such changes on terrestrial ...productivity remains unknown. Based on a synthesis of the literature, here we investigate the net impact of recent atmospheric changes across forest biomes. Location: A range of sites covering major forest biomes. Methods: We use dendrochronological and isotopic records to provide an integrated analysis of changes in growth and iWUE, evaluating the impacts of atmospheric changes in tree growth. In our analysis, positive relationships between changes in growth and iWUE reflect CO₂ stimulation, while neutral effects yield inflections in growth curves (plotted against iWUE), and negative relationships indicate the prevalence of stressors. To estimate net effects (since 1960) and compare responses across biomes, we use a response contrast (RC) index, based on the ratio between cumulative changes in growth and iWUE. Results: In 37 recently published case studies changes in iWUE were consistently positive, increasing by between 10 and 60%, but shifts in growth varied widely within and among forest biomes. Positive RC values were observed in high latitudes (> 40°N), while progressively lower (always negative) responses were observed toward lower latitudes. Growth rates declined between 15 and 55% in tropical forests. In subtropical sites growth declined by between 7 and 10%, while mixed responses occurred in other regions. Main conclusions: Over the past 50 years, tree growth decline has prevailed despite increasing atmospheric CO₂. The impact of atmospheric changes on forest productivity is latitude dependent (R² = 0.9, P < 0.05), but our results suggest that, globally, CO₂ stimulation of mature trees will not counteract emissions. In most surveyed case studies warming-induced stress was evoked to explain growth decline, but other factors, such as nutrient limitation, could have overridden the potential benefits of rising CO₂ levels.
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BFBNIB, FZAB, GIS, IJS, KILJ, NLZOH, NMLJ, NUK, OILJ, PNG, SAZU, SBCE, SBMB, UL, UM, UPUK
IMPORTANCE: The efficacy of vitamin D3 supplementation in coronavirus disease 2019 (COVID-19) remains unclear. OBJECTIVE: To investigate the effect of a single high dose of vitamin D3 on hospital ...length of stay in patients with COVID-19. DESIGN, SETTING, AND PARTICIPANTS: This was a multicenter, double-blind, randomized, placebo-controlled trial conducted in 2 sites in Sao Paulo, Brazil. The study included 240 hospitalized patients with COVID-19 who were moderately to severely ill at the time of enrollment from June 2, 2020, to August 27, 2020. The final follow-up was on October 7, 2020. INTERVENTIONS: Patients were randomly assigned to receive a single oral dose of 200 000 IU of vitamin D3 (n = 120) or placebo (n = 120). MAIN OUTCOMES AND MEASURES: The primary outcome was length of stay, defined as the time from the date of randomization to hospital discharge. Prespecified secondary outcomes included mortality during hospitalization; the number of patients admitted to the intensive care unit; the number of patients who required mechanical ventilation and the duration of mechanical ventilation; and serum levels of 25-hydroxyvitamin D, total calcium, creatinine, and C-reactive protein. RESULTS: Of 240 randomized patients, 237 were included in the primary analysis (mean SD age, 56.2 14.4 years; 104 43.9% women; mean SD baseline 25-hydroxyvitamin D level, 20.9 9.2 ng/mL). Median (interquartile range) length of stay was not significantly different between the vitamin D3 (7.0 4.0-10.0 days) and placebo groups (7.0 5.0-13.0 days) (log-rank P = .59; unadjusted hazard ratio for hospital discharge, 1.07 95% CI, 0.82-1.39; P = .62). The difference between the vitamin D3 group and the placebo group was not significant for in-hospital mortality (7.6% vs 5.1%; difference, 2.5% 95% CI, –4.1% to 9.2%; P = .43), admission to the intensive care unit (16.0% vs 21.2%; difference, –5.2% 95% CI, –15.1% to 4.7%; P = .30), or need for mechanical ventilation (7.6% vs 14.4%; difference, –6.8% 95% CI, –15.1% to 1.2%; P = .09). Mean serum levels of 25-hydroxyvitamin D significantly increased after a single dose of vitamin D3 vs placebo (44.4 ng/mL vs 19.8 ng/mL; difference, 24.1 ng/mL 95% CI, 19.5-28.7; P < .001). There were no adverse events, but an episode of vomiting was associated with the intervention. CONCLUSIONS AND RELEVANCE: Among hospitalized patients with COVID-19, a single high dose of vitamin D3, compared with placebo, did not significantly reduce hospital length of stay. The findings do not support the use of a high dose of vitamin D3 for treatment of moderate to severe COVID-19. TRIAL REGISTRATION: ClinicalTrials.gov Identifier: NCT04449718
The analysis of modular gene co-expression networks is a well-established method commonly used for discovering the systems-level functionality of genes. In addition, these studies provide a basis for ...the discovery of clinically relevant molecular pathways underlying different diseases and conditions.
In this paper, we present a fast and easy-to-use Bioconductor package named CEMiTool that unifies the discovery and the analysis of co-expression modules. Using the same real datasets, we demonstrate that CEMiTool outperforms existing tools, and provides unique results in a user-friendly html report with high quality graphs. Among its features, our tool evaluates whether modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group, as well as it integrates transcriptomic data with interactome information, identifying the potential hubs on each network. We successfully applied CEMiTool to over 1000 transcriptome datasets, and to a new RNA-seq dataset of patients infected with Leishmania, revealing novel insights of the disease's physiopathology.
The CEMiTool R package provides users with an easy-to-use method to automatically implement gene co-expression network analyses, obtain key information about the discovered gene modules using additional downstream analyses and retrieve publication-ready results via a high-quality interactive report.
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DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
The synergetic effects of recent rising atmospheric CO(2) and temperature are expected to favor tree growth in boreal and temperate forests. However, recent dendrochronological studies have shown ...site-specific unprecedented growth enhancements or declines. The question of whether either of these trends is caused by changes in the atmosphere remains unanswered because dendrochronology alone has not been able to clarify the physiological basis of such trends.
Here we combined standard dendrochronological methods with carbon isotopic analysis to investigate whether atmospheric changes enhanced water use efficiency (WUE) and growth of two deciduous and two coniferous tree species along a 9 degrees latitudinal gradient across temperate and boreal forests in Ontario, Canada. Our results show that although trees have had around 53% increases in WUE over the past century, growth decline (measured as a decrease in basal area increment--BAI) has been the prevalent response in recent decades irrespective of species identity and latitude. Since the 1950s, tree BAI was predominantly negatively correlated with warmer climates and/or positively correlated with precipitation, suggesting warming induced water stress. However, where growth declines were not explained by climate, WUE and BAI were linearly and positively correlated, showing that declines are not always attributable to warming induced stress and additional stressors may exist.
Our results show an unexpected widespread tree growth decline in temperate and boreal forests due to warming induced stress but are also suggestive of additional stressors. Rising atmospheric CO2 levels during the past century resulted in consistent increases in water use efficiency, but this did not prevent growth decline. These findings challenge current predictions of increasing terrestrial carbon stocks under climate change scenarios.
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DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
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