Olive tree growing is an important economic activity in many countries, mostly in the Mediterranean Basin, Argentina, Chile, Australia, and California. Although recent intensification techniques ...organize olive groves in hedgerows, most olive groves are rainfed and the trees are scattered (as in Spain and Italy, which account for 50% of the world's olive oil production). Accurate measurement of trees biovolume is a first step to monitor their performance in olive production and health. In this work, we use one of the most accurate deep learning instance segmentation methods (Mask R-CNN) and unmanned aerial vehicles (UAV) images for olive tree crown and shadow segmentation (OTCS) to further estimate the biovolume of individual trees. We evaluated our approach on images with different spectral bands (red, green, blue, and near infrared) and vegetation indices (normalized difference vegetation index-NDVI-and green normalized difference vegetation index-GNDVI). The performance of red-green-blue (RGB) images were assessed at two spatial resolutions 3 cm/pixel and 13 cm/pixel, while NDVI and GNDV images were only at 13 cm/pixel. All trained Mask R-CNN-based models showed high performance in the tree crown segmentation, particularly when using the fusion of all dataset in GNDVI and NDVI (F1-measure from 95% to 98%). The comparison in a subset of trees of our estimated biovolume with ground truth measurements showed an average accuracy of 82%. Our results support the use of NDVI and GNDVI spectral indices for the accurate estimation of the biovolume of scattered trees, such as olive trees, in UAV images.
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Invasion of the Polygraphus proximus Blandford bark beetle causes catastrophic damage to forests with firs (Abies sibirica Ledeb) in Russia, especially in Central Siberia. Determining tree damage ...stage based on the shape, texture and colour of tree crown in unmanned aerial vehicle (UAV) images could help to assess forest health in a faster and cheaper way. However, this task is challenging since (i) fir trees at different damage stages coexist and overlap in the canopy, (ii) the distribution of fir trees in nature is irregular and hence distinguishing between different crowns is hard, even for the human eye. Motivated by the latest advances in computer vision and machine learning, this work proposes a two-stage solution: In a first stage, we built a detection strategy that finds the regions of the input UAV image that are more likely to contain a crown, in the second stage, we developed a new convolutional neural network (CNN) architecture that predicts the fir tree damage stage in each candidate region. Our experiments show that the proposed approach shows satisfactory results on UAV Red, Green, Blue (RGB) images of forest areas in the state nature reserve “Stolby” (Krasnoyarsk, Russia).
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There is a growing demand for accurate high-resolution land cover maps in many fields, e.g., in land-use planning and biodiversity conservation. Developing such maps has been traditionally performed ...using Object-Based Image Analysis (OBIA) methods, which usually reach good accuracies, but require a high human supervision and the best configuration for one image often cannot be extrapolated to a different image. Recently, deep learning Convolutional Neural Networks (CNNs) have shown outstanding results in object recognition in computer vision and are offering promising results in land cover mapping. This paper analyzes the potential of CNN-based methods for detection of plant species of conservation concern using free high-resolution Google Earth TM images and provides an objective comparison with the state-of-the-art OBIA-methods. We consider as case study the detection of Ziziphus lotus shrubs, which are protected as a priority habitat under the European Union Habitats Directive. Compared to the best performing OBIA-method, the best CNN-detector achieved up to 12% better precision, up to 30% better recall and up to 20% better balance between precision and recall. Besides, the knowledge that CNNs acquired in the first image can be re-utilized in other regions, which makes the detection process very fast. A natural conclusion of this work is that including CNN-models as classifiers, e.g., ResNet-classifier, could further improve OBIA methods. The provided methodology can be systematically reproduced for other species detection using our codes available through (https://github.com/EGuirado/CNN-remotesensing).
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Vegetation generally appears scattered in drylands. Its structure, composition and spatial patterns are key controls of biotic interactions, water, and nutrient cycles. Applying segmentation methods ...to very high-resolution images for monitoring changes in vegetation cover can provide relevant information for dryland conservation ecology. For this reason, improving segmentation methods and understanding the effect of spatial resolution on segmentation results is key to improve dryland vegetation monitoring. We explored and analyzed the accuracy of Object-Based Image Analysis (OBIA) and Mask Region-based Convolutional Neural Networks (Mask R-CNN) and the fusion of both methods in the segmentation of scattered vegetation in a dryland ecosystem. As a case study, we mapped
, the dominant shrub of a habitat of conservation priority in one of the driest areas of Europe. Our results show for the first time that the fusion of the results from OBIA and Mask R-CNN increases the accuracy of the segmentation of scattered shrubs up to 25% compared to both methods separately. Hence, by fusing OBIA and Mask R-CNNs on very high-resolution images, the improved segmentation accuracy of vegetation mapping would lead to more precise and sensitive monitoring of changes in biodiversity and ecosystem services in drylands.
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Remotely sensed data are dominated by mixed land use and land cover (LULC) types. Spectral unmixing (SU) is a key technique that disentangles mixed pixels into constituent LULC types and their ...abundance fractions. While existing studies on deep learning (DL) for SU typically focus on single time-step hyperspectral or multispectral data, our work pioneers SU using MODIS MS time series, addressing missing data with end-to-end DL models. Our approach enhances a long-short-term-memory-based model by incorporating geographic, topographic (geo-topographic), and climatic ancillary information. Notably, our method eliminates the need for explicit endmember extraction, instead learning the input-output relationship between mixed spectra and LULC abundances through supervised learning. Experimental results demonstrate that integrating spectral-temporal input data with geo-topographic and climatic information significantly improves the estimation of LULC abundances in mixed pixels. To facilitate this study, we curated a novel labeled dataset for Andalusia (Spain) with monthly MODIS MS time series at 460-m resolution for 2013. Named Andalusia MultiSpectral MultiTemporal Unmixing, this dataset provides pixel-level annotations of LULC abundances along with ancillary information.
In the last five years, deep learning methods and particularly Convolutional Neural Networks (CNNs) have exhibited excellent accuracies in many pattern classification problems. Most of the ...state-of-the-art models apply data-augmentation techniques at the training stage. This paper provides a brief tutorial on data preprocessing and shows its benefits by using the competitive MNIST handwritten digits classification problem. We show and analyze the impact of different preprocessing techniques on the performance of three CNNs, LeNet, Network3 and DropConnect, together with their ensembles. The analyzed transformations are, centering, elastic deformation, translation, rotation and different combinations of them. Our analysis demonstrates that data-preprocessing techniques, such as the combination of elastic deformation and rotation, together with ensembles have a high potential to further improve the state-of-the-art accuracy in MNIST classification.
The use of unmanned aerial vehicles with multiple onboard sensors has grown significantly in tasks involving terrain coverage such as environmental and civil monitoring, disaster management, and ...forest fire fighting. Many of these tasks require a quick and early response, which makes maximizing the land covered from the flight path a challenging objective, especially when the area to be monitored is irregular, large and includes many blind spots. Accordingly, state-of-the-art total viewshed algorithms can be of great help to analyze large areas and find new paths providing maximum visibility. This article shows how the total viewshed computation is a valuable tool for generating paths that provide maximum visibility during a flight. We introduce a new heuristic called visibility-based path planning (VPP) that offers a different solution to the path planning problem. VPP identifies the hidden areas of the target territory to generate a path that provides the highest visual coverage. Simulation results show that VPP can cover up to 98.7% of the Montes de Malaga Natural Park and 94.5% of the Sierra de las Nieves National Park, both located within the province of Malaga (Spain) and chosen as regions of interest. In addition, a real flight test confirmed the high visibility achieved using VPP. Our methodology and analysis can be easily applied to enhance monitoring in other large outdoor areas.
Accurate tree cover mapping is of paramount importance in many fields, from biodiversity conservation to carbon stock estimation, ecohydrology, erosion control, or Earth system modelling. Despite ...this importance, there is still uncertainty about global forest cover, particularly in drylands. Recently, the Food and Agriculture Organization of the United Nations (FAO) conducted a costly global assessment of dryland forest cover through the visual interpretation of orthoimages using the Collect Earth software, involving hundreds of operators from around the world. Our study proposes a new automatic method for estimating tree cover using artificial intelligence and free orthoimages. Our results show that our tree cover classification model, based on convolutional neural networks (CNN), is 23% more accurate than the manual visual interpretation used by FAO, reaching up to 79% overall accuracy. The smallest differences between the two methods occurred in the driest regions, but disagreement increased with the percentage of tree cover. The application of CNNs could be used to improve and reduce the cost of tree cover maps from the local to the global scale, with broad implications for research and management.
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Abstract
Land-Use and Land-Cover (LULC) mapping is relevant for many applications, from Earth system and climate modelling to territorial and urban planning. Global LULC products are continuously ...developing as remote sensing data and methods grow. However, there still exists low consistency among LULC products due to low accuracy in some regions and LULC types. Here, we introduce Sentinel2GlobalLULC, a Sentinel-2 RGB image dataset, built from the spatial-temporal consensus of up to 15 global LULC maps available in Google Earth Engine. Sentinel2GlobalLULC v2.1 contains 194877 single-class RGB image tiles organized into 29 LULC classes. Each image is a 224 × 224 pixels tile at 10 × 10 m resolution built as a cloud-free composite from Sentinel-2 images acquired between June 2015 and October 2020. Metadata includes a unique LULC annotation per image, together with level of consensus, reverse geo-referencing, global human modification index, and number of dates used in the composite. Sentinel2GlobalLULC is designed for training deep learning models aiming to build precise and robust global or regional LULC maps.
Successive efforts have processed the Advanced Very High Resolution Radiometer (AVHRR) sensor archive to produce Normalized Difference Vegetation Index (NDVI) datasets (i.e., PAL, FASIR, GIMMS, and ...LTDR) under different corrections and processing schemes. Since NDVI datasets are used to evaluate carbon gains, differences among them may affect nations' carbon budgets in meeting international targets (such as the Kyoto Protocol). This study addresses the consistency across AVHRR NDVI datasets in the Iberian Peninsula (Spain and Portugal) by evaluating whether their 1982-1999 NDVI trends show similar spatial patterns. Significant trends were calculated with the seasonal Mann-Kendall trend test and their spatial consistency with partial Mantel tests. Over 23% of the Peninsula (N, E, and central mountain ranges) showed positive and significant NDVI trends across the four datasets and an additional 18% across three datasets. In 20% of Iberia (SW quadrant), the four datasets exhibited an absence of significant trends and an additional 22% across three datasets. Significant NDVI decreases were scarce (croplands in the Guadalquivir and Segura basins, La Mancha plains, and Valencia). Spatial consistency of significant trends across at least three datasets was observed in 83% of the Peninsula, but it decreased to 47% when comparing across the four datasets. FASIR, PAL, and LTDR were the most spatially similar datasets, while GIMMS was the most different. The different performance of each AVHRR dataset to detect significant NDVI trends (e.g., LTDR detected greater significant trends (both positive and negative) and in 32% more pixels than GIMMS) has great implications to evaluate carbon budgets. The lack of spatial consistency across NDVI datasets derived from the same AVHRR sensor archive, makes it advisable to evaluate carbon gains trends using several satellite datasets and, whether possible, independent/additional data sources to contrast.
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