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  • MEGA11: Molecular Evolution... MEGA11: Molecular Evolutionary Genetics Analysis Version 11
    Tamura, Koichiro; Stecher, Glen; Kumar, Sudhir Molecular biology and evolution, 07/2021, Volume: 38, Issue: 7
    Journal Article
    Peer reviewed
    Open access

    Abstract The Molecular Evolutionary Genetics Analysis (MEGA) software has matured to contain a large collection of methods and tools of computational molecular evolution. Here, we describe new ...
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  • MEGA7: Molecular Evolutiona... MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
    Kumar, Sudhir; Stecher, Glen; Tamura, Koichiro Molecular biology and evolution, 07/2016, Volume: 33, Issue: 7
    Journal Article
    Peer reviewed
    Open access

    We present the latest version of the Molecular Evolutionary Genetics Analysis (Mega) software, which contains many sophisticated methods and tools for phylogenomics and phylomedicine. In this major ...
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  • MEGA X: Molecular Evolution... MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
    Kumar, Sudhir; Stecher, Glen; Li, Michael ... Molecular biology and evolution, 06/2018, Volume: 35, Issue: 6
    Journal Article
    Peer reviewed
    Open access

    The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable ...
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  • Theoretical Foundation of t... Theoretical Foundation of the RelTime Method for Estimating Divergence Times from Variable Evolutionary Rates
    Tamura, Koichiro; Tao, Qiqing; Kumar, Sudhir Molecular biology and evolution, 07/2018, Volume: 35, Issue: 7
    Journal Article
    Peer reviewed
    Open access

    RelTime estimates divergence times by relaxing the assumption of a strict molecular clock in a phylogeny. It shows excellent performance in estimating divergence times for both simulated and ...
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  • MEGA-CC: computing core of ... MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis
    KUMAR, Sudhir; STECHER, Glen; PETERSON, Daniel ... Bioinformatics (Oxford, England), 10/2012, Volume: 28, Issue: 20
    Journal Article
    Peer reviewed
    Open access

    There is a growing need in the research community to apply the molecular evolutionary genetics analysis (MEGA) software tool for batch processing a large number of datasets and to integrate it into ...
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  • POPTREEW: web version of PO... POPTREEW: web version of POPTREE for constructing population trees from allele frequency data and computing some other quantities
    Takezaki, Naoko; Nei, Masatoshi; Tamura, Koichiro Molecular biology and evolution, 06/2014, Volume: 31, Issue: 6
    Journal Article
    Peer reviewed
    Open access

    POPTREE software, including the command line (POPTREE) and the Windows (POPTREE2) versions, is available to perform evolutionary analyses of allele frequency data, computing distance measures for ...
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  • Estimating divergence times... Estimating divergence times in large molecular phylogenies
    Tamura, Koichiro; Battistuzzi, Fabia Ursula; Billing-Ross, Paul ... Proceedings of the National Academy of Sciences, 11/2012, Volume: 109, Issue: 47
    Journal Article
    Peer reviewed
    Open access

    Molecular dating of species divergences has become an important means to add a temporal dimension to the Tree of Life. Increasingly larger datasets encompassing greater taxonomic diversity are ...
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  • Reliable Confidence Interva... Reliable Confidence Intervals for RelTime Estimates of Evolutionary Divergence Times
    Tao, Qiqing; Tamura, Koichiro; Mello, Beatriz ... Molecular biology and evolution, 01/2020, Volume: 37, Issue: 1
    Journal Article
    Peer reviewed
    Open access

    Abstract Confidence intervals (CIs) depict the statistical uncertainty surrounding evolutionary divergence time estimates. They capture variance contributed by the finite number of sequences and ...
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  • Fast and Accurate Estimates... Fast and Accurate Estimates of Divergence Times from Big Data
    Mello, Beatriz; Tao, Qiqing; Tamura, Koichiro ... Molecular biology and evolution, 01/2017, Volume: 34, Issue: 1
    Journal Article
    Peer reviewed
    Open access

    Ongoing advances in sequencing technology have led to an explosive expansion in the molecular data available for building increasingly larger and more comprehensive timetrees. However, Bayesian ...
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