The invasive red king crab, Paralithodes camtschaticus, has become an abundant and important component in the food web of the coastal Barents Sea and can affect the structure and functioning of the ...local benthic communities through competition and predation. Although dietary composition and feeding behavior of the crab have been intensively studied, prey selectivity in this species under natural conditions remains poorly defined. For this reason, juvenile red king crabs and benthic samples were collected simultaneously at five coastal sites in Kola Bay to reveal the species composition and structure of feeding habits and the diet of red king crabs. The results of stomach and gut content analyses coupled with calculated Ivlev’s indices indicated that 2–5-year-old crabs frequently consumed bivalve mollusks in relative proportions to prey field biomasses. At all sites, juveniles selectively rejected polychaetes. In soft-bottom communities, when the average density of Bivalvia decreased, the crabs showed increased preference for Gastropoda, Crustacea, and Echinodermata. As a result of selective feeding focused on infaunal suspension-feeding mollusks, juvenile red king crabs have altered the structure of benthic communities in the mouth of Kola Bay. Our results may have important implications for evaluating the consequences of the crab introduction and its population management.
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IZUM, KILJ, NUK, PILJ, PNG, SAZU, UL, UM, UPUK
Metabarcoding of genetic material in environmental samples has increasingly been employed as a means to assess biodiversity, also of marine benthic communities. Current protocols employed to extract ...DNA from benthic samples and subsequent bioinformatics pipelines differ considerably. The present study compares three commonly deployed metabarcoding approaches against a morphological approach to assess benthic biodiversity in an intertidal bay in the Dutch Wadden Sea. Environmental DNA was extracted using three different approaches; extraction of extracellular DNA, extraction preceded by cell lysis of a sieved fraction of the sediment, and extraction of DNA directly from small amounts of sediment. DNA extractions after lysis of sieved sediment fractions best recovered the macrofauna diversity whereas direct DNA extraction of small amounts of sediment best recovered the meiofauna diversity. Extractions of extracellular DNA yielded the lowest number of OTUs per sample and hence an incomplete view of benthic biodiversity. An assessment of different bioinformatic pipelines and parameters was conducted using a mock sample with a known species composition. The RDP classifier performed better than BLAST for taxonomic assignment of the samples in this study. Novel metabarcodes obtained from local specimens were added to the SILVA 18S rRNA database to improve taxonomic assignment. This study provides recommendations for a general metabarcoding protocol for marine benthic surveys in the Wadden Sea.
•Metabarcoding is a feasible method to assess benthic fauna in the Dutch Wadden Sea.•Biodiversity outcomes varies with the DNA extraction methods used.•DNA extraction methods including a lysis step were most accurate.•A metabarcoding protocol is proposed to generate reliable and replicable results.•Metabarcoding studies need to incorporate mock samples to acquire reliable results.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UILJ, UL, UM, UPCLJ, UPUK, ZAGLJ, ZRSKP
Excessive inputs of fine‐grained sediment can damage aquatic ecosystems both by degrading habitat condition and by directly impairing biota. Recent research has improved our understanding of how ...benthic macroinvertebrates respond to fine‐grained sediment stress, leading to the development of a variety of bioassessment indices based on changes in taxonomic composition and biological trait composition. Use of biological traits as indicators of stress has been advocated on the basis of a better mechanistic understanding of the biotic and abiotic factors acting on benthic communities. We quantified changes in the macroinvertebrate biological trait assemblage from a large number of river reaches spanning a national‐scale gradient of increasing agricultural fine sediment delivery and retention, having first factored out variation associated with the natural environmental gradient, with the aim of robustly testing predictions of trait response. We found strong support for 2 of 18 predictions of how macroinvertebrate traits would respond to fine sediment stress. Furthermore, using an independent dataset, we were able to confirm the response of 5 of 6 trait classes that partial RLQ‐fourth corner analysis found to be significantly associated with the fine sediment gradient. Prevalence of eggs as a resistant form, in combination with either an adult aquatic life stage or crawling, provided the best indication of fine sediment conditions in streams, approaching the performance of taxonomic composition‐based sediment indices, CoFSIsp and EPSImtl. This study has robustly confirmed the potential of macroinvertebrate biological traits as indicators of fine sediment impacts.
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FZAB, GIS, IJS, KILJ, NLZOH, NUK, OILJ, SAZU, SBCE, SBMB, UL, UM, UPUK
Methane seeps support unique benthic ecosystems in the deep sea existing due to chemosynthetic organic matter. In contrast, in shallow waters there is little or no effect of methane seeps on ...macrofauna. In the present study we focused on the recently described methane discharge area at the northern Laptev Sea shelf. The aim of this work was to describe the shallow-water methane seep macrofauna and to understand whether there are differences in macrobenthic community structure between the methane seep and background areas.
Samples of macrofauna were taken during three expeditions of RV
in 2015, 2017 and 2018 using 0.1 m
grabs and the Sigsbee trawl. 21 grabs and two trawls in total were taken at two methane seep sites named
and
, located at depths of 60-70 m. For control, three 0.1 m
grabs were taken in area without methane seepage.
The abundance of macrofauna was higher at methane seep stations compared to non-seep sites. Cluster analysis revealed five station groups corresponding to control area,
site and
site (the latter represented by three groups). Taxa responsible for differences among the station groups were mostly widespread Arctic species that were more abundant in samples from methane seep sites. However, high densities of symbiotrophic siboglinids
sp. were found exclusively at methane seep stations. In addition, several species possibly new to science were found at several methane seep stations, including the gastropod
sp. and the polychaete
sp. The fauna at control stations was represented only by well-known and widespread Arctic taxa. Higher habitat heterogeneity of the
site compared to
was indicated by the higher number of station groups revealed by cluster analysis and higher species richness in
trawl sample. The development of the described communities at the shallow-water methane seeps can be related to pronounced oligotrophic environment on the northern Siberian shelf.
Much of our understanding of competition comes from observations in sessile systems, such as rainforests and marine invertebrate communities. In terrestrial systems, sessile species often compete for ...multiple limiting resources (i.e., space, light, and nutrients), but in marine systems, space is viewed as the primary or sole limiting resource. Competition theory, on the other hand, suggests that competition for a single limiting resource is unlikely to maintain high species diversity, but manipulative tests of competition for other resources in marine benthic systems are exceedingly rare. Here, we manipulate the availability of food for a classic system, marine sessile invertebrate communities, and investigate the effects on species diversity, abundance, and composition during early succession as well as on the growth of bryozoan populations in the field. We found the number of species to be greater, available space to be lower, and the community composition to be different in assemblages subjected to increased food availability compared to controls. Similarly, laboratory-settled bryozoans deployed into the field grew more in the presence of enhanced food. Our results suggest that food can act as a limiting resource, affecting both diversity and abundance, even when bare space is still available in hard-substratum communities. Consequently, broadening the view of resource limitation beyond solely space may increase our understanding and predictability of marine sessile systems.
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BFBNIB, FZAB, GIS, IJS, INZLJ, KILJ, NLZOH, NMLJ, NUK, OILJ, PNG, SAZU, SBCE, SBMB, UL, UM, UPUK, ZRSKP
Abstract The present study describes the community diversity and gives a seasonal distribution of an intertidal macroalgal assemblage at Prainha Beach, Arraial do Cabo City in Rio de Janeiro state, ...Brazil. Sampling was performed during four seasons of a 1-year period. Organisms were sampled and photographed using photoquadrats to quantify relative coverage. Ninety-six taxa of macroalgae were registered, including 23 chlorophytes, 19 ochrophytes, and 54 rhodophytes, while three barnacles, seven mollusks, one isopod, and one polychaete were recorded among the zoobenthos. In the upper intertidal zone, the coverage was frequently dominated by invertebrates. Macroalgae always dominated the middle and lower zones, covering almost 100 % in both zones. The highest values of species diversity (H’), richness (S), and turnover rates were found during the transition from spring to summer, which coincided with the upwelling period. A comparison with the 1980’s flora revealed that the major changes in the macroalgal assemblage were among species belonging to the same genera, unless new additions were provided. The combination of photoquadrats and minimally destructive sampling allowed a detailed description of the composition and structural characteristics of the intertidal zone, a methodology that should be applied to study protected marine areas.
Decommissioning of offshore infrastructure has become a major issue facing the global offshore energy industry. In the North Sea alone, the decommissioning liability is estimated at £40 billion by ...2040. Current international policy requires removal of offshore infrastructure when their production life ends; however, this policy is being questioned as emerging data reveal the importance of these structures to fish and invertebrate populations. Indeed, some governments are developing ‘rigs-to-reef’ (RTR) policies in situations where offshore infrastructure is demonstrated to have important environmental benefits. Using Remotely Operated Vehicles (ROVs), this study quantified and analysed fish and invertebrate assemblage dynamics associated with an oil and gas (O&G) complex in the Dogger Bank Special Area of Conservation (SAC), in the North Sea, Germany. We found clear depth zonation of organisms: infralittoral communities (0–15 m), circalittoral assemblages (15–45 m) and epi-benthic communities (45–50 m), which implies that ‘topping’ or ‘toppling’ decommissioning strategies could eliminate communities that are unique to the upper zones. Sessile invertebrate assemblages were significantly different between structures, which appeared to be driven by both biotic and abiotic mechanisms. The O&G complex accommodated diverse and abundant motile invertebrate and fish assemblages within which the whelk Buccinium undatum, cod fish Gadus morhua and lumpsucker fish Cyclopterus lumpus used the infrastructure for different stages of reproduction. This observation of breeding implies that the structures may be producing more fish and invertebrates, as opposed to simply acting as sites of attraction (sensu the ‘attraction vs production’ debate). At present, there are no records of C. lumpus spawning at such depth and distance from the coast, and this is the first published evidence of this species using an offshore structure as a spawning site. Overall, this study provides important new insight into the role of offshore O&G structures as habitat for fish and invertebrates in the North Sea, thereby helping to inform decommissioning decisions.
•Decommissioning of North Sea oil and gas infrastructure is a £40 billion liability.•We assessed fish and invertebrate habitat value of a North Sea oil and gas complex.•A diverse range of reef-dependent and transient pelagic species were observed.•Clear depth zonation occurred, helping inform in situ decommissioning strategies.•Evidence of reproduction suggests the complex was producing fish-invertebrates.
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GEOZS, IJS, IMTLJ, KILJ, KISLJ, NLZOH, NUK, OILJ, PNG, SAZU, SBCE, SBJE, UL, UM, UPCLJ, UPUK, ZRSKP
Macrofauna are an abundant and diverse component of abyssal benthic communities and are likely to be heavily impacted by polymetallic nodule mining in the Clarion-Clipperton Zone (CCZ). In 2012, the ...International Seabed Authority (ISA) used available benthic biodiversity data and environmental proxies to establish nine no-mining areas, called Areas of Particular Environmental Interest (APEIs) in the CCZ. The APEIs were intended as a representative system of protected areas to safeguard biodiversity and ecosystem function across the region from mining impacts. Since 2012, a number of research programs have collected additional ecological baseline data from the CCZ. We assemble and analyze macrofaunal biodiversity data sets from eight studies, focusing on three dominant taxa (Polychaeta, Tanaidacea, and Isopoda), and encompassing 477 box-core samples to address the following questions:
(1) How do macrofaunal abundance, biodiversity, and community structure vary across the CCZ, and what are the potential ecological drivers? (2) How representative are APEIs of the nearest contractor areas? (3) How broadly do macrofaunal species range across the CCZ region? and (4) What scientific gaps hinder our understanding of macrofaunal biodiversity and biogeography in the CCZ
? Our analyses led us to hypothesize that sampling efficiencies vary across macrofaunal data sets from the CCZ, making quantitative comparisons between studies challenging. Nonetheless, we found that macrofaunal abundance and diversity varied substantially across the CCZ, likely due in part to variations in particulate organic carbon (POC) flux and nodule abundance. Most macrofaunal species were collected only as singletons or doubletons, with additional species still accumulating rapidly at all sites, and with most collected species appearing to be new to science. Thus, macrofaunal diversity remains poorly sampled and described across the CCZ, especially within APEIs, where a total of nine box cores have been taken across three APEIs. Some common macrofaunal species ranged over 600–3000 km, while other locally abundant species were collected across ≤ 200 km. The vast majority of macrofaunal species are rare, have been collected only at single sites, and may have restricted ranges. Major impediments to understanding baseline conditions of macrofaunal biodiversity across the CCZ include: (1) limited taxonomic description and/or barcoding of the diverse macrofauna, (2) inadequate sampling in most of the CCZ, especially within APEIs, and (3) lack of consistent sampling protocols and efficiencies.
Benthic communities play a major role in organic matter remineralisation and the mediation of many aspects of shelf sea biogeochemistry. Few studies have considered how changes in community structure ...associated with different levels of physical disturbance affect sediment macronutrients and carbon following the cessation of disturbance. Here, we investigate how faunal activity (sediment particle reworking and bioirrigation) in communities that have survived contrasting levels of bottom fishing affect sediment organic carbon content and macronutrient concentrations (NH₄–N, NO₂–N, NO₃–N, PO₄–P, SiO₄–Si). We find that organic carbon content and NO₃–N decline in cohesive sediment communities that have experienced an increased frequency of fishing, whilst NH₄–N, NO₂–N, PO₄–P and SiO₄–Si are not affected. NH₄–N increases in non-cohesive sediments that have experienced a higher frequency of fishing. Further analyses reveal that the way communities are restructured by physical disturbance differs between sediment type and with fishing frequency, but that changes in community structure do little to affect bioturbation and associated levels of organic carbon and nutrient concentrations. Our results suggest that in the presence of physical disturbance, irrespective of sediment type, the mediation of macronutrient and carbon cycling increasingly reflects the decoupling of organism-sediment relations. Indeed, it is the traits of the species that reside at the sediment–water interface, or that occupy deeper parts of the sediment profile, that are disproportionately expressed post-disturbance, that are most important for sustaining biogeochemical functioning.
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BFBNIB, DOBA, EMUNI, FZAB, GEOZS, IJS, IMTLJ, IZUM, KILJ, KISLJ, MFDPS, NMLJ, NUK, OBVAL, OILJ, PILJ, PNG, SAZU, SBCE, SBJE, SBMB, SBNM, UILJ, UKNU, UL, UM, UPUK, VKSCE, ZAGLJ
Taxonomic and functional community structures may respond differently to anthropogenic stressors. Used in combination they can provide an estimate of functional redundancy, a key component of ...ecosystem resilience. In this study, the utility of incorporating functional community structure and co-occurrence network properties into impact assessments of offshore oil and gas (O&G) operations on benthic bacterial communities was investigated. Sediment samples and physico-chemical data were collected along a transect at increasing distances from one exploratory drilling (ED), and one gas production and drilling (GPD) field. Bacterial community composition was determined by 16S rRNA metabarcoding. A hidden-state prediction method (PAPRICA) was used to characterize bacterial metabolic community functions. At both sites, diversity differed significantly between near-field (impacted) and far-field (non-impacted) stations, with both taxonomic and functional alpha-diversity positively affected in near-field stations at the GPD site. The opposite pattern was observed in the near-field samples of ED with lower and higher values respectively. Overall, impacted stations displayed a distinct network signature, with a lower ratio of positive interactions and signs of higher community cohesion. Community profiles from metabolic inference and co-occurrence network topology provided complementary information to taxonomic indices, which may assist with assessing the effects of O&G activities on benthic communities.
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