Infrared thermography (IRT) has become an interesting alternative for performing condition assessments of different types of induction motor (IM)-based equipment when it operates under harsh conditions. The reported results from state-of-the-art articles that have analyzed thermal images do not consider (1): the presence of more than one fault, and (2) the inevitable noise-corruption the images suffer. Bearing in mind these reasons, this paper presents a convolutional neural network (CNN)-based methodology that is specifically designed to deal with noise-corrupted images for detecting the failures that have the highest incidence rate: bearing and broken bar failures; moreover, rotor misalignment failure is also considered, as it can cause a further increase in electricity consumption. The presented results show that the proposal is effective in detecting healthy and failure states, as well as identifying the failure nature, as a 95% accuracy is achieved. These results allow considering the proposal as an interesting alternative for using IRT images obtained in hostile environments.