E-resources
-
BENNETZEN, Jeffrey L; SCHMUTZ, Jeremy; JENKINS, Jerry; BARRY, Kerrie; LINDQUIST, Erika; HELLSTEN, Uffe; DESHPANDE, Shweta; XUEWEN WANG; XIAOMEI WU; MITROS, Therese; TRIPLETT, Jimmy; XIAOHAN YANG; HAO WANG; YE, Chu-Yu; MAURO-HERRERA, Margarita; LIN WANG; PINGHUA LI; SHARMA, Manoj; SHARMA, Rita; RONALD, Pamela C; PANAUD, Olivier; KELLOGG, Elizabeth A; BRUTNELL, Thomas P; PERCIFIELD, Ryan; DOUST, Andrew N; TUSKAN, Gerald A; ROKHSAR, Daniel; DEVOS, Katrien M; HAWKINS, Jennifer; PONTAROLI, Ana C; ESTEP, Matt; LIANG FENG; VAUGHN, Justin N; GRIMWOOD, Jane
Nature biotechnology, 06/2012, Volume: 30, Issue: 6Journal Article
We generated a high-quality reference genome sequence for foxtail millet (Setaria italica). The ∼400-Mb assembly covers ∼80% of the genome and >95% of the gene space. The assembly was anchored to a 992-locus genetic map and was annotated by comparison with >1.3 million expressed sequence tag reads. We produced more than 580 million RNA-Seq reads to facilitate expression analyses. We also sequenced Setaria viridis, the ancestral wild relative of S. italica, and identified regions of differential single-nucleotide polymorphism density, distribution of transposable elements, small RNA content, chromosomal rearrangement and segregation distortion. The genus Setaria includes natural and cultivated species that demonstrate a wide capacity for adaptation. The genetic basis of this adaptation was investigated by comparing five sequenced grass genomes. We also used the diploid Setaria genome to evaluate the ongoing genome assembly of a related polyploid, switchgrass (Panicum virgatum).
Author
Shelf entry
Permalink
- URL:
Impact factor
Access to the JCR database is permitted only to users from Slovenia. Your current IP address is not on the list of IP addresses with access permission, and authentication with the relevant AAI accout is required.
Year | Impact factor | Edition | Category | Classification | ||||
---|---|---|---|---|---|---|---|---|
JCR | SNIP | JCR | SNIP | JCR | SNIP | JCR | SNIP |
Select the library membership card:
If the library membership card is not in the list,
add a new one.
DRS, in which the journal is indexed
Database name | Field | Year |
---|
Links to authors' personal bibliographies | Links to information on researchers in the SICRIS system |
---|
Source: Personal bibliographies
and: SICRIS
The material is available in full text. If you wish to order the material anyway, click the Continue button.