Seeds of Abies nebrodensis were subjected to laboratory tests aimed to detect fungal contaminants and to obtain xenobiotic-free seedlings, by the use of different surface sterilising agents. Moreover, hot water at 60 °C was used to suppress any fungal microorganisms colonizing the inner tissues. Alternaria alternata, Aspergillus flavus and Stemphylium vesicarium were the most frequent fungal contaminants. Non-contaminated seeds showed germination values ranging from 0 to 36.4% depending on the applied sterilization protocol. Further analyses will be carried out to establish the influence of these fungi on the seed germination process and their relationship with seedlings of A. nebrodensis.