Potentially effective glycerol-based solvents for nitrocellulose have been designed using a top-down
in silico
procedure that combines Computer Assisted Organic Synthesis (CAOS) and Molecular Design ...(CAMD). Starting from a bio-based building block - glycerol - a large number of synthetically feasible chemical structures have been designed using the GRASS (GeneratoR of Agro-based Sustainable Solvents) program. GRASS applies well-selected industrial chemical transformations to glycerol together with a limited number of relevant co-reactants. Then, the most promising structures are considered as lead compounds for further modification
in silico
thanks to the IBSS (InBioSynSolv) program, which generates derivatives with alkyl, cycloalkyl, alkene, cycloalkene or phenyl substituents. Finally, IBSS ranks all the candidates according to the value of their overall performance function to best fit the predefined specifications,
i.e.
(i) high solubilisation of nitrocellulose, (ii) slow evaporation and non-flammability (iii) low toxicity and environmental impact. This general strategy enables the highlighting of the most relevant solvent candidate derived from any building block for a given application. To validate the approach, 15 commercially available solvents derived from glycerol were confronted with nitrocellulose and led to highlight diacetin as an effective and safe solvent.
Potentially effective glycerol-based solvents for nitrocellulose have been designed using a top-down
in silico
procedure that combines Computer Assisted Organic Synthesis (CAOS) and Molecular Design (CAMD).
Mathematical models do not explicitly represent the influence of soil microbial diversity on soil organic carbon (SOC) dynamics despite recent evidence of relationships between them. The objective of ...the present study was to statistically investigate relationships between bacterial and fungal diversity indexes (richness, evenness, Shannon index, inverse Simpson index) and decomposition of different pools of soil organic carbon by measuring dynamics of CO2 emissions under controlled conditions. To this end, 20 soils from two different land uses (cropland and grassland) were incubated with or without incorporation of 13C-labelled wheat-straw residue. 13C-labelling allowed us to study residue mineralisation, basal respiration and the priming effect independently. An innovative data-mining approach was applied, based on generalized additive models and a predictive criterion. Results showed that microbial diversity indexes can be good covariates to integrate in SOC dynamics models, depending on the C source and the processes considered (native soil organic carbon vs. fresh wheat residue). Specifically, microbial diversity indexes were good candidates to help explain mineralisation of native soil organic carbon, while priming effect processes seemed to be explained much more by microbial composition, and no microbial diversity indexes were found associated with residue mineralisation. Investigation of relationships between diversity and mineralisation showed that higher diversity, as measured by the microbial diversity indexes, seemed to be related to decreased CO2 emissions in the control soil. We suggest that this relationship can be explained by an increase in carbon yield assimilation as microbial diversity increases. Thus, the parameter for carbon yield assimilation in mathematical models could be calculated as a function of microbial diversity indexes. Nonetheless, given limitations of the methods used, these observations should be considered with caution and confirmed with more experimental studies. Overall, along with other studies on relationships between microbial community composition and SOM dynamics, this study suggests that overall measures of microbial diversity may constitute relevant ways to include microbial diversity in models of SOM dynamics.
Celotno besedilo
Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
The Cascade red fox (CRF) occurred historically throughout subalpine and alpine habitats in the Cascade Range of Washington and southernmost British Columbia, but now appears to be extremely rare. ...Causes for its apparent decline are unknown, as is the current distribution and connectivity of its populations. Additionally, the introduction of nonnative (fur-farm) red foxes to surrounding lowland areas during the past century raises concerns about their expansion to higher elevations and potential hybridization with the CRF. We conducted noninvasive genetic sampling and analyses of CRFs in a 5575 km
2
region in the southern portion of its range, which is thought to contain a significant proportion of the current population. We obtained 154 mitochondrial DNA sequences and microsatellite genotypes for 51 individuals to determine trends in genetic diversity, assess evidence for nonnative introgression, and describe population structure. Although heterozygosity (H
e
= 0.60, SE = 0.03) was only slightly lower than an estimate obtained from samples collected during the 1980s (H
e
= 0.64, SE = 0.05), genetic effective size of the current population based on a one-sample estimate was very small (N
e
= 16.0, 95% CI 13.3–19.4), suggesting a loss of genetic diversity and the potential for inbreeding depression in future decades. Genetic connectivity was high and we found no evidence for hybridization with nonnative lowland red foxes. Thus, although a small effective population size indicates the possibility of inbreeding depression and loss of evolutionary potential, high connectivity and genetic integrity could mitigate this to some extent, indicating that the population could respond to conservation efforts. Ultimately, successful conservation of this species depends on a better understanding of the factors that originally contributed to its decline and that currently limit its growth.
Permanent supportive housing is an effective intervention for stably housing most people experiencing homelessness and mental illness who have complex support needs. However, high-risk behaviours and ...challenges are prevalent among this population and have the potential to seriously harm health and threaten housing tenures. Yet, the research on the relationship between high-risk issues and housing stability in permanent supportive housing has not been previously synthesized. This rapid review aimed to identify the housing-related outcomes of high-risk behaviours and challenges in permanent supportive housing settings, as well as the approaches used by agencies and residents to address them. A range of high-risk behaviours and challenges were examined, including risks to self (overdose, suicide/suicide attempts, non-suicidal self-injury, falls/fall-related injuries), and risks to multiple parties and/or building (fire-setting/arson, hoarding, apartment takeovers, physical/sexual violence, property damage, drug selling, sex trafficking). The search strategy included four components to identify relevant academic and grey literature: (1) searches of MEDLINE, APA PsycINFO, and CINAHL Plus; (2) hand searches of three journals with aims specific to housing and homelessness; (3) website browsing/searching of seven homelessness, supportive housing, and mental health agencies and networks; and (4) Advanced Google searches. A total of 32 articles were eligible and included in the review. Six studies examined the impacts of high-risk behaviours and challenges on housing tenancies, with overdose being identified as a notable cause of death. Twenty-six studies examined approaches and barriers to managing high-risk behaviours and challenges in PSH programs. These were categorized into eight types of approaches: (1) clinical, (2) relational/educational, (3) surveillant, (4) restrictive, (5) strategic, (6) design-based, (7) legal, and (8) self-defence. Consistent across all approaches was a lack of rigorous examination of their effectiveness. Further, some approaches that are legal, restrictive, surveillant, or strategic in nature may be used to promote safety, but may conflict with other program objectives, including housing stability, or resident empowerment and choice. Research priorities were identified to address the key evidence gaps and move toward best practices for preventing and managing high-risk behaviours and challenges in permanent supportive housing.
Lung squamous cell carcinoma is a common type of lung cancer, causing approximately 400,000 deaths per year worldwide. Genomic alterations in squamous cell lung cancers have not been comprehensively ...characterized, and no molecularly targeted agents have been specifically developed for its treatment. As part of The Cancer Genome Atlas, here we profile 178 lung squamous cell carcinomas to provide a comprehensive landscape of genomic and epigenomic alterations. We show that the tumour type is characterized by complex genomic alterations, with a mean of 360 exonic mutations, 165 genomic rearrangements, and 323 segments of copy number alteration per tumour. We find statistically recurrent mutations in 11 genes, including mutation of TP53 in nearly all specimens. Previously unreported loss-of-function mutations are seen in the HLA-A class I major histocompatibility gene. Significantly altered pathways included NFE2L2 and KEAP1 in 34%, squamous differentiation genes in 44%, phosphatidylinositol-3-OH kinase pathway genes in 47%, and CDKN2A and RB1 in 72% of tumours. We identified a potential therapeutic target in most tumours, offering new avenues of investigation for the treatment of squamous cell lung cancers.
Celotno besedilo
Dostopno za:
DOBA, IJS, IZUM, KILJ, KISLJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
The polymer chain orientation and degree of crystallinity within a polymer:fullerene bulk heterojunction (BHJ) photovoltaic can greatly impact device performance. In general, a face-on chain ...orientation is preferred for charge conduction through sandwich-structure photovoltaic devices, but for many conjugated polymers, an edge-on conformation is energetically favored. In this work, we examine the effects of different processing techniques on photovoltaics based on the poly4,8-bis(2-ethylhexyloxy)-benzol1,2-b:4,5-b′dithiophene-2,6-diyl-alt-4-(2-ethylhexyloxy-1-one)thieno 3,4-bthiophene-2,6-diyl (PBDTTT-C):6,6-phenyl-C71-butyric-acid-methylester (PC71BM) materials combination. We examine the extent of polymer crystallinity and crystalline domain orientation using both traditional blend-casting (BC), where the polymer and fullerene are cast from a single, codissolved solution, as well as sequential processing (SqP), where the polymer film is deposited first, and then the fullerene is infiltrated into the polymer film in a second solution processing step. We show using two-dimensional grazing-incidence wide-angle X-ray scattering (GIWAXS) that BC leads to a disordered, isotropic polymer network in the resulting BHJ film with a correspondingly poor device efficiency. By contrast, SqP preserves the preferred face-on chain orientation seen in pure polymer films, yielding higher short-circuit currents that are consistent with the increased hole mobility of face-on oriented polymer chains. We also study the effects of the widely used processing additive 1,8-diiodooctane (DIO) on polymer chain orientation and crystallinity in photovoltaic devices made by both processing techniques. We show that DIO results in increased polymer crystallinity, and in devices made by BC, DIO also causes a partial recovery of the face-on PBDTTT-C domain orientation, improving device performance. The face-on chain orientation in SqP devices produces efficiencies similar to those of optimized BC devices made with DIO but without the need for solvent additives or other postprocessing steps.
Intraoperative diagnosis is routinely performed on cytology touch preparations (TPs) from core needle biopsies (CNBs). Current interest promotes their utility as an important source of patient tissue ...for clinical genomic testing. Herein we present whole genome structural variant analysis (SVA) from mate-pair sequencing (MPseq) and whole exome sequencing (WES) mutation calling in DNA directly whole genome amplified (WGA) from TPs. Chromosomal copy changes and somatic DNA junction detection from MPseq of TPs were highly consistent with associated CNBs and bulk resected tissues in all cases. While increased frequency coverage noise from limitations of amplification of limited sample input was significant, this was effectively compensated by natural tumor enrichment during the TP process, which also enhanced variant detection and loss of heterozygosity evaluations from WES. This novel TP methodology enables expanded utility of frequently limited CNB for both clinical and research genomic testing.
The progressive utility of this technique is emphasized at a number of levels, including:•Increased utility of limited clinical specimens for clinical and research testing•Simple touching of glass slide enriches tumor and provides clinical test sample•High quality DNA yielded compatible with multiple sequencing platforms•Technique compatible with multiple clinical cytology specimens•Genomic rearrangements and mutations detected consistent with originating tissues
Aims
Cetuximab associated with cisplatin and 5‐fluorouracil is used to treat patients with inoperable or metastatic head and neck squamous cell carcinomas (HNSCC) up until disease progression or ...unacceptable toxicities. To date, no biomarkers of efficacy are available to select patients who will benefit from treatment.
Methods
An ancillary pharmacokinetics (PK) exploration was performed in the context of a prospective study investigating circulating‐tumour cells vs progression‐free survival (PFS). Cetuximab plasma concentrations were analysed according to a population PK model. Individual exposure parameters were confronted with soluble epidermal growth factor receptor (sEGFR) concentrations, tumour response and PFS.
Results
PK data (28 patients, 203 observations) were best described by a two‐compartment model with linear elimination. Performance status (PS) significantly correlated to both cetuximab clearance and central volume of distribution with both parameters increasing by 33.3% (95% CI 1–65.6) for each 1‐point increase of PS compared to PS = 0. Univariate analysis showed that patients with higher trough cetuximab concentrations at Day 7 (Cmin,D7) had better tumour response (P = 0.03) and longer PFS (P = 0.035). However, multivariate analysis revealed that only PS and tumour size at baseline remained significantly associated with PFS. Levels of sEGFR increased during cetuximab treatment but were not associated with PFS in the multivariate analysis.
Conclusions
Our study prospectively indicates that PS is likely a confounding factor in the relationship between cetuximab PK and PFS, patients with a poor PS having lower cetuximab plasma exposure and lower PFS.
A 52-year-old, nonsmoking, African-American woman with a history of obesity, hypertension, and rheumatoid arthritis was referred for workup of multiple bilateral pulmonary nodules. The pulmonary ...nodules were discovered incidentally while undergoing a CT scan for an abdominal mass that was radiographically diagnosed as a uterine leiomyoma. She was asymptomatic from a pulmonary standpoint without unintentional weight loss, fevers, or night sweats. Her mother and sister had a history of lung cancer. She was diagnosed with rheumatoid arthritis 5 years earlier that was controlled with adalimumab for approximately 3 years when she stopped being seen by her rheumatologist and discontinued adalimumab. During evaluation for the abdominal mass, she re-established care with a rheumatologist and was started on 40 mg prednisone daily with plans to restart adalimumab once the workup for the abdominal mass and pulmonary nodules was completed. She had undergone bariatric surgery with cholecystectomy approximately 5 years earlier, after which she experienced intentional postsurgical weight loss.
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