Plasmas are highly nonlinear and multi-scale, motivating a hierarchy of models to understand and describe their behavior. However, there is a scarcity of plasma models of lower fidelity than ...magnetohydrodynamics (MHD). Galerkin models, obtained by projection of the MHD equations onto a truncated modal basis, can furnish this gap in the lower levels of the model hierarchy. In the present work, we develop low-dimensional Galerkin plasma models which preserve global conservation laws by construction. This additional model structure enables physics-constrained machine learning algorithms that can discover these types of low-dimensional plasma models directly from data. This formulation relies on an energy-based inner product which takes into account all of the dynamic variables. The theoretical results here build a bridge to the extensive Galerkin literature in fluid mechanics, and facilitate the development of physics-constrained reduced-order models from plasma data.
Boundary value problems (BVPs) play a central role in the mathematical analysis of constrained physical systems subjected to external forces. Consequently, BVPs frequently emerge in nearly every ...engineering discipline and span problem domains including fluid mechanics, electromagnetics, quantum mechanics, and elasticity. The fundamental solution, or Green's function, is a leading method for solving linear BVPs that enables facile computation of new solutions to systems under any external forcing. However, fundamental Green's function solutions for nonlinear BVPs are not feasible since linear superposition no longer holds. In this work, we propose a flexible deep learning approach to solve nonlinear BVPs using a dual-autoencoder architecture. The autoencoders discover an invertible coordinate transform that linearizes the nonlinear BVP and identifies both a linear operator \(L\) and Green's function \(G\) which can be used to solve new nonlinear BVPs. We find that the method succeeds on a variety of nonlinear systems including nonlinear Helmholtz and Sturm--Liouville problems, nonlinear elasticity, and a 2D nonlinear Poisson equation. The method merges the strengths of the universal approximation capabilities of deep learning with the physics knowledge of Green's functions to yield a flexible tool for identifying fundamental solutions to a variety of nonlinear systems.
Accurate and agile trajectory tracking in sub-gram Micro Aerial Vehicles (MAVs) is challenging, as the small scale of the robot induces large model uncertainties, demanding robust feedback ...controllers, while the fast dynamics and computational constraints prevent the deployment of computationally expensive strategies. In this work, we present an approach for agile and computationally efficient trajectory tracking on the MIT SoftFly, a sub-gram MAV (0.7 grams). Our strategy employs a cascaded control scheme, where an adaptive attitude controller is combined with a neural network policy trained to imitate a trajectory tracking robust tube model predictive controller (RTMPC). The neural network policy is obtained using our recent work, which enables the policy to preserve the robustness of RTMPC, but at a fraction of its computational cost. We experimentally evaluate our approach, achieving position Root Mean Square Errors lower than 1.8 cm even in the more challenging maneuvers, obtaining a 60% reduction in maximum position error compared to our previous work, and demonstrating robustness to large external disturbances
Data-driven resolvent analysis Herrmann, Benjamin; Baddoo, Peter J; Semaan, Richard ...
arXiv.org,
10/2020
Paper, Journal Article
Odprti dostop
Resolvent analysis identifies the most responsive forcings and most receptive states of a dynamical system, in an input--output sense, based on its governing equations. Interest in the method has ...continued to grow during the past decade due to its potential to reveal structures in turbulent flows, to guide sensor/actuator placement, and for flow control applications. However, resolvent analysis requires access to high-fidelity numerical solvers to produce the linearized dynamics operator. In this work, we develop a purely data-driven algorithm to perform resolvent analysis to obtain the leading forcing and response modes, without recourse to the governing equations, but instead based on snapshots of the transient evolution of linearly stable flows. The formulation of our method follows from two established facts: \(1)\) dynamic mode decomposition can approximate eigenvalues and eigenvectors of the underlying operator governing the evolution of a system from measurement data, and \(2)\) a projection of the resolvent operator onto an invariant subspace can be built from this learned eigendecomposition. We demonstrate the method on numerical data of the linearized complex Ginzburg--Landau equation and of three-dimensional transitional channel flow, and discuss data requirements. The ability to perform resolvent analysis in a completely equation-free and adjoint-free manner will play a significant role in lowering the barrier of entry to resolvent research and applications.
The sparse identification of nonlinear dynamics (SINDy) is a regression framework for the discovery of parsimonious dynamic models and governing equations from time-series data. As with all system ...identification methods, noisy measurements compromise the accuracy and robustness of the model discovery procedure. In this work, we develop a variant of the SINDy algorithm that integrates automatic differentiation and recent time-stepping constrained motivated by Rudy et al. for simultaneously (i) denoising the data, (ii) learning and parametrizing the noise probability distribution, and (iii) identifying the underlying parsimonious dynamical system responsible for generating the time-series data. Thus within an integrated optimization framework, noise can be separated from signal, resulting in an architecture that is approximately twice as robust to noise as state-of-the-art methods, handling as much as 40% noise on a given time-series signal and explicitly parametrizing the noise probability distribution. We demonstrate this approach on several numerical examples, from Lotka-Volterra models to the spatio-temporal Lorenz 96 model. Further, we show the method can identify a diversity of probability distributions including Gaussian, uniform, Gamma, and Rayleigh.
Accurately modeling the nonlinear dynamics of a system from measurement data is a challenging yet vital topic. The sparse identification of nonlinear dynamics (SINDy) algorithm is one approach to ...discover dynamical systems models from data. Although extensions have been developed to identify implicit dynamics, or dynamics described by rational functions, these extensions are extremely sensitive to noise. In this work, we develop SINDy-PI (parallel, implicit), a robust variant of the SINDy algorithm to identify implicit dynamics and rational nonlinearities. The SINDy-PI framework includes multiple optimization algorithms and a principled approach to model selection. We demonstrate the ability of this algorithm to learn implicit ordinary and partial differential equations and conservation laws from limited and noisy data. In particular, we show that the proposed approach is several orders of magnitude more noise robust than previous approaches, and may be used to identify a class of complex ODE and PDE dynamics that were previously unattainable with SINDy, including for the double pendulum dynamics and the Belousov Zhabotinsky (BZ) reaction.
Cyclic AMP-dependent protein kinase (cAMP-PK) is a ubiquitous enzyme that, when activated by cAMP, is capable of phosphorylating a variety of intracellular proteins. The central postulate of ...cAMP-mediated hormone action is that hormones regulate intracellular cAMP concentration and cAMP-PK mediates the effects of this second messenger. Although this postulate accurately describes cAMP action in certain systems, it does not adequately provide for recent observations of the accumulation of cAMP and the activation of protein kinase without the anticipated effects on protein kinase's substrates. Both biochemical and cytochemical technics provide evidence that hormonally-specific regulation of cAMP action occurs and is important. Our thesis is that hormonal regulation of metabolic events via cAMP is localized intracellular phenomenon. We propose that occupation of some cell-surface hormone receptors leads to cAMP accumulation and the activation of protein kinase in subcellular compartments, with the consequent phosphorylation of specific, rather than all, substrates of protein kinase. circumstances potentially contributing to this specificity include: (a) physical and kinetic compartmentation of hormone-receptor-adenylate cyclase complexes non-randomly within the cell membrane; and, (b) a fixed spatial relationship of hormonally activated adenylate cyclase and specific intracellular regions by the participation of cytoskeletal proteins.
Nonlinear differential equations rarely admit closed-form solutions, thus requiring numerical time-stepping algorithms to approximate solutions. Further, many systems characterized by multiscale ...physics exhibit dynamics over a vast range of timescales, making numerical integration computationally expensive due to numerical stiffness. In this work, we develop a hierarchy of deep neural network time-steppers to approximate the flow map of the dynamical system over a disparate range of time-scales. The resulting model is purely data-driven and leverages features of the multiscale dynamics, enabling numerical integration and forecasting that is both accurate and highly efficient. Moreover, similar ideas can be used to couple neural network-based models with classical numerical time-steppers. Our multiscale hierarchical time-stepping scheme provides important advantages over current time-stepping algorithms, including (i) circumventing numerical stiffness due to disparate time-scales, (ii) improved accuracy in comparison with leading neural-network architectures, (iii) efficiency in long-time simulation/forecasting due to explicit training of slow time-scale dynamics, and (iv) a flexible framework that is parallelizable and may be integrated with standard numerical time-stepping algorithms. The method is demonstrated on a wide range of nonlinear dynamical systems, including the Van der Pol oscillator, the Lorenz system, the Kuramoto-Sivashinsky equation, and fluid flow pass a cylinder; audio and video signals are also explored. On the sequence generation examples, we benchmark our algorithm against state-of-the-art methods, such as LSTM, reservoir computing, and clockwork RNN. Despite the structural simplicity of our method, it outperforms competing methods on numerical integration.
The direct monitoring of a rotating detonation engine (RDE) combustion chamber has enabled the observation of combustion front dynamics that are composed of a number of co- and/or counter-rotating ...coherent traveling shock waves whose nonlinear mode-locking behavior exhibit bifurcations and instabilities which are not well understood. Computational fluid dynamics simulations are ubiquitous in characterizing the dynamics of RDE's reactive, compressible flow. Such simulations are prohibitively expensive when considering multiple engine geometries, different operating conditions, and the long-time dynamics of the mode-locking interactions. Reduced-order models (ROMs) provide a critically enabling simulation framework because they exploit low-rank structure in the data to minimize computational cost and allow for rapid parameterized studies and long-time simulations. However, ROMs are inherently limited by translational invariances manifest by the combustion waves present in RDEs. In this work, we leverage machine learning algorithms to discover moving coordinate frames into which the data is shifted, thus overcoming limitations imposed by the underlying translational invariance of the RDE and allowing for the application of traditional dimensionality reduction techniques. We explore a diverse suite of data-driven ROM strategies for characterizing the complex shock wave dynamics and interactions in the RDE. Specifically, we employ the dynamic mode decomposition and a deep Koopman embedding to give new modeling insights and understanding of combustion wave interactions in RDEs.
