ABSTRACT
The Vera C. Rubin Observatory Legacy Survey of Space and Time (LSST) will observe several Deep Drilling Fields (DDFs) to a greater depth and with a more rapid cadence than the main survey. ...In this paper, we describe the ‘DeepDrill’ survey, which used the Spitzer Space Telescope Infrared Array Camera (IRAC) to observe three of the four currently defined DDFs in two bands, centred on 3.6 and 4.5 μm. These observations expand the area that was covered by an earlier set of observations in these three fields by the Spitzer Extragalactic Representative Volume Survey (SERVS). The combined DeepDrill and SERVS data cover the footprints of the LSST DDFs in the Extended Chandra Deep Field–South (ECDFS) field, the ELAIS-S1 field (ES1), and the XMM-Large-Scale Structure Survey field (XMM-LSS). The observations reach an approximate 5σ point-source depth of 2 μJy (corresponding to an AB magnitude of 23.1; sufficient to detect a 10$^{11} \, \mathrm{M}_{\odot}$ galaxy out to z ≈ 5) in each of the two bands over a total area of $\approx 29\,$ deg2. The dual-band catalogues contain a total of 2.35 million sources. In this paper, we describe the observations and data products from the survey, and an overview of the properties of galaxies in the survey. We compare the source counts to predictions from the Shark semi-analytic model of galaxy formation. We also identify a population of sources with extremely red (3.6−4.5 >1.2) colours which we show mostly consists of highly obscured active galactic nuclei.
Mosquito communities across the globe frequently comprise a mix of native and cosmopolitan species. New Zealand's mosquito communities are no exception. Here we describe the abundance, distribution ...and phenological patterns for a community of six mosquito taxa resident across the Kaipara Harbour region of northern New Zealand. Adult mosquitoes were sampled using baited light traps, serviced biweekly for 3½ years. Seasonal fluctuations in abundance of adults were examined for correlations with temperature and rainfall over the preceding weeks. Four endemic species comprised over 98% of the total catch, with Coquillettidia iracunda being the most abundant. Two introduced species, Aedes notoscriptus and Culex quinquefasciatus were widely distributed, but each comprised <1% of the total catch. Culiseta tonnoiri was the only species that appeared geographically restricted, occurring at one-third of the sites. Distinct temporal peaks in adult abundance were evident: Aedes antipodeus was most abundant in spring, Ae. notoscriptus and Cq. iracunda were most abundant in summer and Cx. quinquefasciatus was most abundant in autumn. Culiseta tonnoiri and Culex pervigilans were of variable abundance throughout the year. For all species examined, temporal variations in abundance were more strongly associated with temperature in the preceding weeks than with preceding rainfall. A better knowledge of the factors driving patterns of spatial and temporal abundance will allow an improved understanding of how non-native species may integrate themselves into resident mosquito communities.
The genetic differences among HIV-1 subtypes may be critical to clinical management and drug resistance surveillance as antiretroviral treatment is expanded to regions of the world where diverse ...non-subtype-B viruses predominate.
To assess the impact of HIV-1 subtype and antiretroviral treatment on the distribution of mutations in protease and reverse transcriptase, a binomial response model using subtype and treatment as explanatory variables was used to analyze a large compiled dataset of non-subtype-B HIV-1 sequences. Non-subtype-B sequences from 3,686 persons with well characterized antiretroviral treatment histories were analyzed in comparison to subtype B sequences from 4,769 persons. The non-subtype-B sequences included 461 with subtype A, 1,185 with C, 331 with D, 245 with F, 293 with G, 513 with CRF01_AE, and 618 with CRF02_AG. Each of the 55 known subtype B drug-resistance mutations occurred in at least one non-B isolate, and 44 (80%) of these mutations were significantly associated with antiretroviral treatment in at least one non-B subtype. Conversely, of 67 mutations found to be associated with antiretroviral therapy in at least one non-B subtype, 61 were also associated with antiretroviral therapy in subtype B isolates.
Global surveillance and genotypic assessment of drug resistance should focus primarily on the known subtype B drug-resistance mutations.
Celotno besedilo
Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Summary Viral tropism is the ability of viruses to enter and infect specific host cells and is based on the ability of viruses to bind to receptors on those cells. Testing for HIV tropism is ...recommended before prescribing a chemokine receptor blocker. In most European countries, HIV tropism is identified with tropism phenotype testing. New data support genotype analysis of the HIV third hypervariable loop (V3) for the identification of tropism. The European Consensus Group on clinical management of tropism testing was established to make recommendations to clinicians and clinical virologists. The panel recommends HIV-tropism testing for the following groups: drug-naive patients in whom toxic effects are anticipated or for whom few treatment options are available; patients who have poor tolerability to or toxic effects from current treatment or who have CNS pathology; and patients for whom therapy has failed and a change in treatment is considered. In general, an enhanced sensitivity Trofile assay and V3 population genotyping are the recommended methods. Genotypic methods are anticipated to be used more frequently in the clinical setting because of their greater accessibility, lower cost, and faster turnaround time than other methods. For the interpretation of V3 loop genotyping, clinically validated systems should be used when possible. Laboratories doing HIV tropism tests should have adequate quality assurance measures. Similarly, close collaboration between HIV clinicians and virologists is needed to ensure adequate diagnostic and treatment decisions.
Interpretation of Human Immunodeficiency Virus 1 (HIV-1) genotypic drug resistance is still a major challenge in the follow-up of antiviral therapy in infected patients. Because of the high degree of ...HIV-1 natural variation, complex interactions and stochastic behaviour of evolution, the role of resistance mutations is in many cases not well understood. Using Bayesian network learning of HIV-1 sequence data from diverse subtypes (A, B, C, F and G), we could determine the specific role of many resistance mutations against the protease inhibitors (PIs) nelfinavir (NFV), indinavir (IDV), and saquinavir (SQV). Such networks visualize relationships between treatment, selection of resistance mutations and presence of polymorphisms in a graphical way. The analysis identified 30N, 88S, and 90M for nelfinavir, 90M for saquinavir, and 82A/T and 46I/L for indinavir as most probable major resistance mutations. Moreover we found striking similarities for the role of many mutations against all of these drugs. For example, for all three inhibitors, we found that the novel mutation 89I was minor and associated with mutations at positions 90 and 71. Bayesian network learning provides an autonomous method to gain insight in the role of resistance mutations and the influence of HIV-1 natural variation. We successfully applied the method to three protease inhibitors. The analysis shows differences with current knowledge especially concerning resistance development in several non-B subtypes.
Eight South American geographical populations of the parasitoid Microctonus hyperodae Loan were collected in South America (Argentina, Brazil, Chile and Uruguay) and released in New Zealand for ...biological control of the weevil Listronotus bonariensis (Kuschel), a pest of pasture grasses and cereals. DNA sequencing (16S, COI, 28S, ITS1, beta-tubulin), RAPD, AFLP, microsatellite, SSCP and RFLP analyses were used to seek markers for discriminating between the South American populations. All of the South American populations were more homogeneous than expected. However, variation in microsatellites and 16S gene sequences corroborated morphological, allozyme and other phenotypic evidence of trans-Andes variation between the populations. The Chilean populations were the most genetically variable, while the variation present on the eastern side of the Andes mountains was a subset of that observed in Chile.
Ixodiphagus taiaroaensis n. sp., is described and illustrated from specimens of Encyrtidae that emerged from nymphs of Ixodes uriae White, 1852 and I. eudyptidis Maskell, 1885 (Acari: Ixodidae) ...collected on the Otago Peninsula, New Zealand. The findings represent the first record of a tick parasitoid in New Zealand as well as the first recorded instance worldwide of parasitism in the host tick species. Aspects of the biology and possible origins of the new species are discussed.
The Palaearctic parasitoid
Microctonus aethiopoides Loan (Hymenoptera: Braconidae) has been introduced to North America for biological control of weevils in the genera
Sitona and
Hypera (Coleoptera: ...Curculionidae) and to Australia and New Zealand for control of
Sitona discoideus Gyllenhal. Various geographic and host-associated populations of
M. aethiopoides have exhibited differences in host preference, host range, and adult morphology. These differences have generally been interpreted as indicative of genetically differentiated biotypes of
M. aethiopoides, but direct genetic evidence of biotypic variation has been lacking. Nucleotide sequence data were generated from the gene regions COI, 16S, 28S, and β-tubulin to assess genetic variation among
M. aethiopoides reared from various host species collected in Australia, Iran, New Zealand, the United States, and 10 European countries. Ten adult morphological characters were also measured to validate the identity of the specimens and to assess morphological variation among the geographic and host-associated populations. Parsimony and maximum likelihood analyses of the COI, 16S, and β-tubulin sequences provided strong support for the presence of at least two
M. aethiopoides biotypes, one associated with
Hypera species and the other with
Sitona species. There was also evidence for genetic divergence among parasitoids associated with different
Sitona species. Morphological variation was also closely correlated with host species, but the occurrence of morphological variation in the absence of genetic variation suggested morphological characters should be used cautiously with
M. aethiopoides biotypes.
Since the discovery of the clover pest Sitona lepidus (Coleoptera: Curculionidae) in New Zealand in 1996, substantial effort has been made to find suitable biological control agents. In the summer of ...2000 about 8600 Sitona lepidus were collected from 15 locations in 11 European countries. The most common parasitoid recovered was Microctonus aethiopoides (Hymenoptera: Braconidae). These parasitoids were used to infect S. lepidus populations that were then forwarded to a quarantine facility in New Zealand. All European-derived populations of this parasitoid were found to develop readily in both British and New Zealand populations of S. lepidus. This contrasted with the New Zealand ecotype of M. aethiopoides which was unable to develop in S. lepidus. The S. lepidus population obtained from Caen, France was also parasitised by a Perilitus sp. (Hymenoptera: Braconidae) along with Microsoma exiguum (Diptera: Tachinidae). Microsoma exiguum was also reared from weevils collected in Devon along with a single female specimen of Allurus litu-ratus (Hymenoptera: Braconidae). Of all the species reared out however, only M. aethiopoides could be induced to parasitise S. lepidus in the laboratory. Thirty-four different isolates of Beauveria bassiana (Balsamo) Vuillemin (Deuteromycotina: Hyphomy-cetes) strains were collected, some of which were more virulent than New Zealand isolates already tested against adult S. lepidus. Fifteen isolates of the facultative pathogen Serratia Bizio spp. (Enterobac-teriaceae) were also collected.
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