Arsenic (As) is a non-essential toxic metalloid whose elevated concentration in rice grains is a serious issue both for rice yield and quality, and for human health. The rice-As interactions, hence, ...have been studied extensively in past few decades. A deep understanding of factors influencing As uptake and transport from soil to grains can be helpful to tackle this issue so as to minimize grain As levels. As uptake at the root surface by rice plants depends on factors like iron plaque and radial oxygen loss. There is involvement of a number of transporters
., phosphate transporters and aquaglyceroporins in the uptake and transport of different As species and in the movement to subcellular compartments. These processes are also affected by sulfur availability and consequently on the level of thiol (-SH)-containing As binding peptides viz., glutathione (GSH) and phytochelatins (PCs). Further, the role of phloem in As movement to the grains is also suggested. This review presents a detailed map of journey of As from soil to the grains. The implications for the utilization of available knowledge in minimizing As in rice grains are presented.
•Microbial consortium of P. putida and C. vulgaris improved the growth and reduced arsenic induced oxidative stress in rice.•The consortium reduced the accumulation of arsenic and also improved the ...level of nutrient elements in rice.•Reduced arsenic in rice due to the consortium alleviated the requirement of thiols and antioxidant enzymes.
In the present study, arsenic (As) toxicity amelioration potential of a consortium of plant growth promoting rhizobacterium (Pseudomonas putida) and alga (Chlorella vulgaris) was evaluated during arsenate (AsV) exposure to rice (Oryza sativa) plants for 15 d. The consortium mediated amelioration of As toxicity was evident through improved growth of rice plants (root and shoot length and biomass) and reduced oxidative stress as level of superoxide radicals (O2−), hydrogen peroxide (H2O2) and membrane damage. The positive responses were attributable to a significant decline in As accumulation in root (94 mg kg−1 dw) and shoot (51 mg kg−1 dw) in consortium (P. putida + C. vulgaris) inoculated seedlings as compared to As alone exposed plants (156 and 98 mg kg−1 dw, respectively). There were also significant changes in the level of various nutrient elements (Mn, Fe, Co, Zn, Mo and Cu), thiols and in the activities of antioxidant and thiol metabolism enzymes in the consortium inoculated seedlings that allowed the plants to tolerate As stress effectively and achieve better growth. The study demonstrated that consortium of P. putida and C. vulgaris may alleviate As stress and improve growth of rice seedlings along with reduction in As levels.
Signal routers are one of the important element to route the information at desired network terminals. The routing of information could be more efficient when employed in optical regime. The ...existence of diffraction limit in photonic components becomes more vulnerable beyond the subwavelength scale, and limit their applications in high processing domain. Therefore, to overcome the limitation of photonic technology, plasmonics comes into origin with the capability of confining the charge particles (surface plasmons) to deep subwavelength scale. Among all the geometries of plasmonic waveguides, metal-insulator-metal plasmonic waveguides are more suitable to confine the surface plasmons beyond the operating wavelength. In this work, we have utilized the confining ability of MIM waveguides and cascade two different structures of Mach–Zehnder modulator. Then, two modulators are cascaded together to design the structure of signal router within the footprints of 58 µm. The analysis of signal router is done at the operating wavelength of 1550 nm with transverse magnetic (TM) polarization. The density of optical signal is controlled by optimizing the meshing to 0.029 µm in x- and z- directions with the linewidth\of 0.39 µm. The numerical analysis of structure is done by using finite-difference-time-domain (FDTD) method.
The adverse effects of arsenic (As) contamination are well known. Rice is a staple food for 50% of the world population but the accumulation of As into rice hampers the food security and safety. Thus ...the amelioration of As stress and reduction of As levels in rice are needed. In this study, transcriptome (Illumina sequencing) and proteome (2D gel electrophoresis) explored mechanisms of consortium (P. putida+C. vulgaris) mediated growth promotion and As amelioration in rice. The rice seedlings grown hydroponically in the Hewitt nutrient medium and after acclimatization, exposed to 50 µM As alone as well as with microbial consortium to observe the impact at morphological and molecular level. The inoculation of microbial consortium significantly ameliorated the As toxicity, improved growth of root hairs and maintained cellular integrity of the epidermis, exodermis and the stele region during As exposure. Several genes showed differential expression in As and As+P. putida. Down-regulation of As transporters (OsPIP2;2 and OsPIP2;3, OsTIP2;1) and higher expression of WRKY gene (WRKY28) during As+P. putida+C.vulgaris suggested reduction of As uptake in rice. The up-regulation of nutrient elements transporters (OsZIFL9, OsZIFL5, OsZIFL12 and OsZIP2, OsYSL15 and OsCOPT6) in the presence of consortium indicated the improved nutrient status of rice. Higher expression of regulatory elements like auxin/indole 3 acetic acid (AUX/IAA), WRKY and myeloblastosis (MYB) TFs and down-regulation of defense responsive genes such Glutathione-S-transferase, Peroxidase and Glutaredoxinduring As+P. putida+C.vulgaris exposure was also observed. Proteome profiling demonstrated differential abundance of proteins involved in photosynthesis (chlorophyll a/b binding protein, photosystem I Fe-S centre), energy metabolism (ATP synthase subunit beta) transport, signaling (tubulin 1, actin 1), defense (glutathione S-transferase, phenylalanine ammonia lyase) and amino acid metabolism (cysteine synthase, glutamine synthetase), which supported the As ameliorative and growth-promoting potential of microbial consortium during As stress in rice plants. The study gives comprehensive information about gene and protein changes in rice plants in As+consortium exposure.
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•P.putida+C.vulgaris ameliorated arsenic toxicity by modulating the defensive pathways.•P.putida+C.vulgaris efficient to modulate transcription factors which provide tolerance by reducing As uptake.•P.putida+C.vulgaris modulated the expression of transporters.•Rice with high nutritional value during As exposure achieved through P.putida+C.vulgaris.
The deterioration of water quality of river Ganga is a huge concern for Govt. of India. Apart from various pollution sources, the religious and ritualistic activities also have a good share in ...deteriorating Ganga water quality. Thus, the aim of the present study was to evaluate the changes in physico-chemical properties, microbial diversity and role of bacteriophages in controlling bacterial population of Ganga water during mass ritualistic bathing on the occasion of Maha-Kumbh in 2013. The BOD, COD, hardness, TDS and level of various ions significantly increased, while DO decreased in Ganga water during Maha-Kumbh. Ganga water was more affluent in trace elements than Yamuna and their levels further increased during Maha-Kumbh, which was correlated with decreased level of trace elements in the sediment. The bacterial diversity and evenness were increased and correlated with the number of devotees taking a dip at various events. Despite enormous increase in bacterial diversity during mass ritualistic bathing, the core bacterial species found in pre-Kumbh Ganga water were present in all the samples taken during Kumbh and post-Kumbh. In addition, the alteration in bacterial population during mass bathing was well under 2 log units which can be considered negligible. The study of bacteriophages at different bathing events revealed that Ganga was richer with the presence of bacteriophages in comparison with Yamuna against seven common bacteria found during the Maha-Kumbh. These bacteriophages have played a role in controlling bacterial growth and thus preventing putrefaction of Ganga water. Further, the abundance of trace elements in Ganga water might also be a reason for suppression of bacterial growth. Thus, the current study showed that Ganga has characteristic water quality in terms of physico-chemical property and microbial diversity that might have a role in the reported self-cleansing property of Ganga; however, the increased pollution load has surpassed its self-cleansing properties. Since water has been celebrated in all cultures, the outcome of the current study will not only be useful for the policy maker of cleaning and conservation of Ganga but also for restoration of other polluted rivers all over the world.
Hepatitis C virus infection is one of the main causes of liver disease that can lead to liver cirrhosis and finally to the chronic development of Hepatocellular Carcinoma (HCC). With 8 different HCV ...genotypes circulating, it becomes necessary to characterize the pathogenesis caused by each one of the HCV genotypes infecting population of a particular setting. Present study aims to identify the circulating Hepatitis C virus (HCV) genotypes in the different areas of State of Uttar Pradesh, India and understand their clinical etiology and related co-morbidities. The patients reporting to Sharda Hospital, Uttar Pradesh, India who were diagnosed positive for HCV were included in the study. The informed consent was obtained and then blood was drawn. In-house primers, for all the 8 genotypes were prepared and RT-PCR was performed. The amplified product was subjected to Agarose gel electrophoresis to identify the genotypes present in individual samples. Total 30 serum samples were taken. Of these, 21 (70%) showed presence of multiple genotypes, while 7 (23.33%) showed positivity for single genotype and two did not show any bands. Presence of multiple genotypes in individual patient has been reported for the first time. The pathological consequences of multiple genotypes within one host need to be studied further in terms of increased risk of developing a chronic liver disease. Further studies are being undertaken to study association of specific HCV genotype and multiple genotypes, Core, NS3 and NS5 viral proteins with the disease progression to develop predictors of liver cirrhosis and HCC.
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Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, UILJ, UKNU, UL, UM, UPUK
The present article represents the data for analysis of microbial consortium (P.putida+C.vulgaris) mediated amelioration of arsenic toxicity in rice plant. In the current study the transcriptome ...profiling of treated rice root and shoot was performed by illumina sequencing (Platform 2000). To process the reads and to analyse differential gene expression, Fastxtoolkit, NGSQCtoolkit, Bowtie 2 (version 2.1.0), Tophat program (version 2.0.8), Cufflinks and Cuffdiff programs were used. For Proteome profiling, total soluble proteins in shoot of rice plant among different treatments were extracted and separated by 2D poly acrylamide gel electrophoresis (PAGE) and then proteins were identified with the help of MALDI-TOF/TOF. In gel based method of protein identification, the isoelectric focusing machine (IPGphor system,Bio-Rad USA), gel unit (SDS-PAGE) and MALDI-TOF/TOF (4800 proteomic analyzer Applied Biosystem, USA) were used for successful separation and positive identification of proteins. To check the differential abundance of proteins among different treatments, PDQuest software was used for data analysis. For protein identification, Mascot search engine (http://www.matrixscience.com) using NCBIprot/SwissProt databases of rice was used. The analyzed data inferred comprehensive picture of key genes and their respective proteins involved in microbial consortium mediated improved plant growth and amelioration of As induced phyto-toxicity in rice. For the more comprehensive information of data, the related full-length article entitled “Microbial consortium mediated growth promotion and Arsenic reduction in Rice: An integrated transcriptome and proteome profiling” may be accessed.
HMs such as As, aluminium (Al), antinomy (Sb), barium (Ba), Ni, Cd, beryllium (Be), bismuth (Bi), Pb, Hg, indium (In), lithium (Li), vanadium (V), silver (Ag), tellurium (Te), platinum (Pt), tin ...(Sn), strontium (Sr), and uranium (U) have not been reported to be involved in biological functions so are termed as non-essential metals (Yedjou et al. 2012). According to USEPA (USEPA 2020), the limit for HMs in soil and for oral dose are 0.77 mg kg−1 and 0.33 µg Kg−1 day−1 for As, 78 and 1 for Cd, 0.31 and 3 for Cr, 400 and N/A for Pb, 11 and N/A for mercury, and 1600 mg kg−1 and 20 µg Kg−1 day−1 for Ni (USEPA 2020). Key factors responsible for toxicity of Cr mainly include solubility of its compound and the oxidation state. ...the carcinogenicity of HMs is the global interest of research in reference to public health concern. Loss of soil fertility, marked decrease in agricultural yield and reduction of microbial diversity and activity of microbes is the result of HMs pollution in soil (Kushwaha et al. 2015). ...in depth analysis and understanding of pathways and mechanisms in plant is necessary to avoid food chain contamination.
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•RNA Seq. and protein profiling presented new dimensions of Se mediated As tolerance.•Se ameliorated As toxicity by modulating Lsi1, NIP1;1, NRAMP and ABCG transporters.•Up-regulation ...of GST, PRX, GRX and HSPs suggested amelioration of oxidative stress.•Se provided As tolerance through TFs e.g., MYB, WRKY, AUX/IAA responsiveness.•Omics approaches established comprehensive verification of As-Se responsive proteins.
Arsenic (As), a chronic poison and non-threshold carcinogen, is a food chain contaminant in rice, posing yield losses as well as serious health risks. Selenium (Se), a trace element, is a known antagonist of As toxicity. In present study, RNA seq. and proteome profiling, along with morphological analyses were performed to explore molecular cross-talk involved in Se mediated As stress amelioration. The repair of As induced structural deformities involving disintegration of cell wall and membranes were observed upon Se supplementation. The expression of As transporter genes viz., NIP1;1, NIP2;1, ABCG5, NRAMP1, NRAMP5, TIP2;2 as well as sulfate transporters, SULTR3;1 and SULTR3;6, were higher in As + Se compared to As alone exposure, which resulted in reduced As accumulation and toxicity. The higher expression of regulatory elements like AUX/IAA, WRKY and MYB TFs during As + Se exposure was also observed. The up-regulation of GST, PRX and GRX during As + Se exposure confirmed the amelioration of As induced oxidative stress. The abundance of proteins involved in photosynthesis, energy metabolism, transport, signaling and ROS homeostasis were found higher in As + Se than in As alone exposure. Overall, present study identified Se responsive pathways, genes and proteins involved to cope-up with As toxicity in rice.
Arsenic (As) contamination of paddy rice is a serious threat all over the world particularly in South East Asia. Selenium (Se) plays important role in protection of plants against various abiotic ...stresses including heavy metals. Moreover, arsenite (AsIII) and selenite (SeIV) can be biologically antagonistic due to similar electronic configuration and sharing the common transporter for their uptake in plant. In the present study, the response of oxidative stress, phenolic compounds and nutrient elements was analyzed to investigate Se mediated As tolerance in rice seedlings during AsIII and SeIV exposure in hydroponics. Selenite (25µM) significantly decreased As accumulation in plant than As (25µM) alone treated plants. Level of oxidative stress related parameters viz., reactive oxygen species (ROS), lipid peroxidation, electrical conductivity, nitric oxide and pro-oxidant enzyme (NADPH oxidase), were in the order of As>As+Se>control>Se. Selenium ameliorated As phytotoxicity by increased level of phenolic compounds particularly gallic acid, protocatechuic acid, ferulic acid and rutin and thiol metabolism related enzymes viz., serine acetyl transferase (SAT) and cysteine synthase (CS). Selenium supplementation enhanced the uptake of nutrient elements viz., Fe, Mn, Co, Cu, Zn, Mo, and improved plant growth. The results concluded that Se addition in As contaminated environment might be an important strategy to reduce As uptake and associated phytotoxicity in rice plant by modulation of phenolic compounds and increased uptake of nutrient elements.
•Se reduced the arsenic uptake and accumulation in rice plant.•Se enhanced uptake of nutrient elements (Fe, Mn, Cu, Zn, Co and Mo) during As stress in rice plant.•Se increased the phenolic contents in rice roots and shoots.•As induced oxidative stress was reduced during Se supplementation in rice.
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