Grassed waterways are used to mitigate the offsite transport of sediment generated by soil erosion. This study used a novel trait‐based ranking approach as a method to screen potential candidate ...grass monocultures and mixes based on their theoretical performance in reducing (a) detachment via rainsplash, (b) detachment via scouring due to concentrated flow and (c) sediment transport and deposition processes. Selected grass species were grown under simulated UK summer and autumn establishment conditions under three different replicated rainfall scenarios: drought, normal rainfall and excess rainfall. The grass species used were the novel hybrid species Festulolium cv Prior (Fest_1) and Festulolium Bx511 (Fest_2) and a conventional mixture of Lolium perenne and Festuca rubra (Conv). Monocultures and mixtures of these species were studied. Plant traits pertinent to control of soil erosion by water were measured. Aboveground traits included plant height, percentage ground cover, aboveground biomass, stem diameter, stem area density and number of tillers. Belowground traits included total root length, root total surface area, belowground biomass, root diameter and % fine roots ≤0.25 mm. For summer conditions, the species treatments that had the highest overall soil erosion mitigation potential were Conv, Fest_1 + 2 + Conv and Fest_2. For autumn conditions, the best treatments were Fest_1 + 2, Fest_1 + 2 + Conv and Conv. The Fest 1 + 2 + Conv had more desirable traits for erosion control than mono Festulolium treatments for the autumn conditions. The conventional mixture had more desirable traits for erosion control than mono Festulolium treatments in both climate scenarios. The results indicate that the trait‐based ranking approach utilized in this study can be used to inform rapid screening of candidate grass species for soil erosion control.
Highlights
How to select the most suitable grass species for soil erosion control under changing climate conditions?
A novel scoring system based on plant traits associated with soil erosion mitigation was developed.
Fest_1 + 2 and Conv treatments expressed traits strongly associated with maximum soil erosion mitigation.
Species selection for grassed waterways should consider the establishment growing season and expected rainfall.
Since the first effort to recombinantly express the hepatitis B core protein (HBc) in bacteria, the remarkable virion-like structure has fuelled interest in unraveling the structural and antigenic ...properties of this protein. Initial studies proved HBc virus-like particles to possess strong immunogenic properties, which can be conveyed to linked antigens. More than 35 years later, numerous studies have been performed using HBc as a carrier protein for antigens derived from over a dozen different pathogens and diseases. In this review, the authors highlight the intriguing features of HBc as carrier and antigen, illustrated by some examples and experimental results that underscore the value of HBc as an antigen-presenting platform. Two of these HBc fusions, targeting influenza A and malaria, have even progressed into clinical testing. In the future, the HBc-based virus-like particles platform will probably continue to be used for the display of poorly immunogenic antigens, mainly because virus-like particle formation by HBc capsomers is compatible with nearly any available recombinant gene expression system.
Influenza virus neuraminidase (NA) is an interesting target of small-molecule antiviral drugs. We isolated a set of H5N1 NA-specific single-domain antibodies (N1-VHHm) and evaluated their in vitro ...and in vivo antiviral potential. Two of them inhibited the NA activity and in vitro replication of clade 1 and 2 H5N1 viruses. We then generated bivalent derivatives of N1-VHHm by two methods. First, we made N1-VHHb by genetically joining two N1-VHHm moieties with a flexible linker. Second, bivalent N1-VHH-Fc proteins were obtained by genetic fusion of the N1-VHHm moiety with the crystallizable region of mouse IgG2a (Fc). The in vitro antiviral potency against H5N1 of both bivalent N1-VHHb formats was 30- to 240-fold higher than that of their monovalent counterparts, with 50% inhibitory concentrations in the low nanomolar range. Moreover, single-dose prophylactic treatment with bivalent N1-VHHb or N1-VHH-Fc protected BALB/c mice against a lethal challenge with H5N1 virus, including an oseltamivir-resistant H5N1 variant. Surprisingly, an N1-VHH-Fc fusion without in vitro NA-inhibitory or antiviral activity also protected mice against an H5N1 challenge. Virus escape selection experiments indicated that one amino acid residue close to the catalytic site is required for N1-VHHm binding. We conclude that single-domain antibodies directed against influenza virus NA protect against H5N1 virus infection, and when engineered with a conventional Fc domain, they can do so in the absence of detectable NA-inhibitory activity.
Highly pathogenic H5N1 viruses are a zoonotic threat. Outbreaks of avian influenza caused by these viruses occur in many parts of the world and are associated with tremendous economic loss, and these viruses can cause very severe disease in humans. In such cases, small-molecule inhibitors of the viral NA are among the few treatment options for patients. However, treatment with such drugs often results in the emergence of resistant viruses. Here we show that single-domain antibody fragments that are specific for NA can bind and inhibit H5N1 viruses in vitro and can protect laboratory mice against a challenge with an H5N1 virus, including an oseltamivir-resistant virus. In addition, plant-produced VHH fused to a conventional Fc domain can protect in vivo even in the absence of NA-inhibitory activity. Thus, NA of influenza virus can be effectively targeted by single-domain antibody fragments, which are amenable to further engineering.
Since the worldwide outbreak of the novel coronavirus (SARS-CoV-2), the question raised whether infected patients would elicit long-lasting protective immunity. Several companies developed ...serological assays for the detection of SARS-CoV-2 antibodies. In this study, we compared 4 different serology assays in convalescents up to 7 months post-infection. Both Abbott assays showed a significative decrease of IgG antibodies over time. Whereas the Elecsys Anti‑SARS‑CoV‑2 N assay (Roche) initially showed a significant increase, antibody titers significantly decreased at the latest timepoint. Although not significant, the Elecsys Anti‑SARS‑CoV‑2 S assay (Roche) showed tendency towards increasing titers overtime. Our data showed that results of SARS-CoV-2 serology should be interpreted with caution.
Soil is essential for sustaining life on land. Plant roots play a crucial role in stabilising soil and minimising erosion, although these mechanisms are still not completely understood. Consequently, ...identifying and breeding for plant traits to enhance erosion resistance is challenging. Root hair mutants in Arabidopsis thaliana were studied using three different quantitative methods to isolate their effect on root-soil cohesion. We present compelling evidence that micro-scale interactions of root hairs with surrounding soil increase soil cohesion and reduce erosion. Arabidopsis seedlings with root hairs were more difficult to detach from soil, compost and sterile gel media than those with hairless roots, and it was 10-times harder to erode soil from roots with than without hairs. We also developed a model that can consistently predict the impact root hairs make to soil erosion resistance. Our study thus provides new insight into the mechanisms by which roots maintain soil stability.
Cover crop use is a well‐established soil conservation technique and has been proven effective for erosion control and soil remediation in many arable systems. Whereas the obvious protection ...mechanism of cover crops occurs through the canopy, plant roots perform multiple functions. It is important to consider the soil functions delivered by different root systems in order to increase the uptake of cover crops for sustainable soil and water management. A classification of cover crop root systems up to 0.6 m deep based on functional traits will allow us to better study their potential role in soil bio‐engineering, soil structural improvements for hydrological services and soil resource protection. This was a glasshouse experiment, using large 1‐m3 containers filled with loam soil, loose topsoil and compacted subsoil, in which seven cover crop species (oat, rye, buckwheat, vetch, radish, mustard, phacelia) were grown for 90 days. Root cores were taken at the end of the experiment, washed and imaged to determine root traits (total root length density, average root diameter, root specific length and root surface area) for both the topsoil and subsoil layers. Root identity was determined from a distinctive combination of single root traits and related to three soil functional variables, representing soil structural improvement, runoff mitigation and erosion control. The results showed that total root length and root surface area correlate well with aggregate stability and soil macroporosity. Buckwheat, mustard and rye had significantly greater aggregate stability, as well as 10, 8 and 7% greater microporosity, respectively, at the interface with the compacted layer when compared to the control bare soil. Furthermore, average root diameter negatively correlated with soil macroporosity, indicating that cover crops with a fine root system are more beneficial for creating pore‐space than those with thicker taproots. Selecting cover crop species with the right root traits is therefore crucial to improve soil health.
Highlights
Roots of cover crops are a largely unexplored frontier for bio‐engineering of agricultural soils.
Combinations of root traits were identified that most improve soil characteristics.
Cover crops with finer root systems were better at enhancing porosity.
Root length and surface area were most important for enhancing soil structure.
The severity of influenza-related illness is mediated by many factors, including in vivo cell tropism, timing and magnitude of the immune response, and presence of pre-existing immunity. A direct way ...to study cell tropism and virus spread in vivo is with an influenza virus expressing a reporter gene. However, reporter gene-expressing influenza viruses are often attenuated in vivo and may be genetically unstable. Here, we describe the generation of an influenza A virus expressing GFP from a tri-cistronic NS segment. To reduce the size of this engineered gene segment, we used a truncated NS1 protein of 73 amino acids combined with a heterologous dimerization domain to increase protein stability. GFP and nuclear export protein coding information were fused in frame with the truncated NS1 open reading frame and separated from each other by 2A self-processing sites. The resulting PR8-NS1(1-73)GFP virus was successfully rescued and replicated as efficiently as the parental PR8 virus in vitro and was slightly attenuated in vivo. Flow cytometry-based monitoring of cells isolated from PR8-NS1(1-73)GFP virus infected BALB/c mice revealed that GFP expression peaked on day two in all cell types tested. In particular respiratory epithelial cells and myeloid cells known to be involved in antigen presentation, including dendritic cells (CD11c+) and inflammatory monocytes (CD11b+ GR1+), became GFP positive following infection. Prophylactic treatment with anti-M2e monoclonal antibody or oseltamivir reduced GFP expression in all cell types studied, demonstrating the usefulness of this reporter virus to analyze the efficacy of antiviral treatments in vivo. Finally, deep sequencing analysis, serial in vitro passages and ex vivo analysis of PR8-NS1(1-73)GFP virus, indicate that this virus is genetically and phenotypically stable.
Celotno besedilo
Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
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