Oxygenic phototrophs perform carbon fixation through the Calvin–Benson cycle. Different mechanisms adjust the cycle and the light‐harvesting reactions to rapid environmental changes. Photosynthetic ...glyceraldehyde 3‐phosphate dehydrogenase (GAPDH) is a key enzyme in the cycle. In land plants, different photosynthetic GAPDHs exist: the most abundant isoform is formed by A2B2 heterotetramers and the least abundant by A4 homotetramers. Regardless of the subunit composition, GAPDH is the major consumer of photosynthetic NADPH and its activity is strictly regulated. While A4‐GAPDH is regulated by CP12, AB‐GAPDH is autonomously regulated through the C‐terminal extension (CTE) of its B subunits. Reversible inhibition of AB‐GAPDH occurs via the oxidation of a cysteine pair located in the CTE and the substitution of NADP(H) with NAD(H) in the cofactor‐binding site. These combined conditions lead to a change in the oligomerization state and enzyme inhibition. SEC–SAXS and single‐particle cryo‐EM analysis were applied to reveal the structural basis of this regulatory mechanism. Both approaches revealed that spinach (A2B2)n‐GAPDH oligomers with n = 1, 2, 4 and 5 co‐exist in a dynamic system. B subunits mediate the contacts between adjacent tetramers in A4B4 and A8B8 oligomers. The CTE of each B subunit penetrates into the active site of a B subunit of the adjacent tetramer, which in turn moves its CTE in the opposite direction, effectively preventing the binding of the substrate 1,3‐bisphosphoglycerate in the B subunits. The whole mechanism is made possible, and eventually controlled, by pyridine nucleotides. In fact, NAD(H), by removing NADP(H) from A subunits, allows the entrance of the CTE into the active site of the B subunit, hence stabilizing inhibited oligomers.
Regulation of the heteromeric form of photosynthetic glyceraldehyde 3‐phosphate dehydrogenase (AB‐GAPDH) depends on oscillation between a fully active heterotetramer (A2B2) and inhibited oligomers. Experimental evidence demonstrates that the inhibition of spinach AB‐GAPDH depends on the formation of dimers, tetramers or pentamers of A2B2 modules linked together by C‐terminal extensions of the B subunits that extend from one modular tetramer and occupy two active sites of the adjacent tetramer.
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Doxorubicin hydrochloride (DX) is one of the most powerful anticancer agents though its clinical use is impaired by severe undesired side effects. DX encapsulation in nanocarrier ...systems has been introduced as a mean to reduce its toxicity. Micelles of the nonionic triblock copolymers of poly(ethylene oxide) (PEO) and poly(propylene oxide) (PPO) (PEO-PPO-PEO), are very promising carrier systems. The positive charge of DX confines the drug to the hydrophilic corona region of the micelles. The use of mixed micelles of PEO-PPO-PEO copolymers and a negatively charged bile salt should favour the solubilization of DX in the apolar core region of the micelles.
We studied the DX uptake in the micellar systems formed by sodium cholate (NaC) and the PEO100PPO65PEO100 (F127) copolymer, prepared with different mole ratios (MR = nNaC/nF127) in the range 0 ÷ 1. The systems were characterized by small angle X-ray scattering (SAXS) and dynamic light scattering (DLS); DX encapsulation was followed by steady-state and time-resolved fluorescence spectroscopy.
The successful solubilization of DX in the host micellar systems did not affect their structure, as evidenced by both SAXS and DLS data. In the presence of NaC, DX experiences a more apolar environment as indicated by its characteristic fluorescent behaviour. The almost complete uptake of the drug occurred shortly after the sample preparation; however, time resolved fluorescence revealed a slow partition of DX between corona and core regions of the micelles. DX degradation in the mixed micellar systems was markedly reduced relative to aqueous DX solutions.
The chiral bile salt sodium cholate has been covalently linked to tetra-aryl-porphyrins, conferring them an extrinsic chirality and obtaining new molecules with high tendency to aggregate in ...solution. The chirality transfer from the molecular to the nano- and meso-scale has been investigated by promoting the self-assembly of the conjugates balancing the ratio of aqueous/organic solvent mixtures and allowing a fine control of the dimensions and morphology of the final supramolecular architectures. The shift from elongated structures with helical ribbon features to monodisperse tubules or from tightly packed rolled sheets to wrapped scrolls was enabled by changing the solvent composition, with the possibility of forming tubular structures with a hollow cavity. From UV–Vis and Circular Dichroism (CD) spectroscopy the ability to self-assemble into J-type aggregates with a strong induction of supramolecular chirality was revealed, shedding light on a two-step process, with a fast monomer nucleation followed by a slow second step of further stereospecific chiral evolution. The results as a whole promote the new porphyrin-cholate conjugates as promising smart and easily tunable chiral materials for the design of stereoselective sensing devices.
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A round‐robin study has been carried out to estimate the impact of the human element in small‐angle scattering data analysis. Four corrected datasets were provided to participants ready for analysis. ...All datasets were measured on samples containing spherical scatterers, with two datasets in dilute dispersions and two from powders. Most of the 46 participants correctly identified the number of populations in the dilute dispersions, with half of the population mean entries within 1.5% and half of the population width entries within 40%. Due to the added complexity of the structure factor, far fewer people submitted answers on the powder datasets. For those that did, half of the entries for the means and widths were within 44 and 86%, respectively. This round‐robin experiment highlights several causes for the discrepancies, for which solutions are proposed.
A data‐analysis round robin was performed using four real‐world datasets to quantify the role of the human factor in analysis; the 46 responses show that the analyses by different researchers and laboratories may not be directly comparable, with large reporting inconsistencies in distribution widths and volume fractions. Several underlying causes for these inconsistencies are highlighted that can be addressed by the community.
The association in aqueous mixtures of a thermoresponsive cationic diblock copolymer composed of poly(N-isopropylacrylamide) (PNIPAM) and poly(3-acrylamidopropyl)-trimethylammonium-chloride ...(PAMPTMA(+)) and the oppositely charged bile salt sodium deoxycholate (NaDC) is investigated at different compositions by light and X-ray scattering, calorimetry, and electrophoretic mobility measurements. Clouding reveals aggregation upon heating. The addition of NaDC to the copolymer solution lowers the temperature of the transition and increases its cooperativity. At high temperature and low NaDC fractions, mixed aggregates with a dehydrated PNIPAM-rich interior and a PAMPTMA(+)-rich shell partially neutralized by DC– anions are formed. At high NaDC fractions, the aggregates present internal regularly spaced segregated nanoregions of dehydrated PNIPAM and PAMPTMA(+)/DC– (microphase separation). The results suggest that the mixed aggregates have appealing composition-controlled thermoresponse. The system phase separates at body temperature and the highest NaDC fractions investigated, meaning in conditions accomplished when the use of the polymer as a bile salt sequestrant is hypothesized.
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•Temperature dependent association of a cationic poly(N-isopropylacrylamide) block copolymer and a bile salt was studied.•Phase transition temperature of block copolymer lowered by adding bile salt.•At high temperature and low bile salt fractions, mixed aggregates with dehydrated PNIPAM-rich interior were formed.•At high temperature and high bile salt fractions, the mixed aggregates presented regularly spaced segregated nanoregions.•The promising application of the block copolymer as a bile salt sequestrant could be hypothesized at body conditions.
Bile salts (BSs) are naturally occurring rigid surfactants with a steroidal skeleton and specific self-assembly and interface behaviors. Using bile salts as precursors, derivatives can be synthesized ...to obtain molecules with specific functionalities and amphiphilic structure. Modifications on single molecules are normally performed by substituting the least-hindered hydroxyl group on carbon C-3 of the steroidal A ring or at the end of the lateral chain. This leads to monosteroidal rigid building blocks that are often able to self-organize into 1D structures such as tubules, twisted ribbons, and fibrils with helical supramolecular packing. Tubular aggregates are of particular interest, and they are characterized by cross-section inner diameters spanning a wide range of values (3–500 nm). They can form through appealing pH- or temperature-responsive aggregation and in mixtures of bile salt derivatives to provide mixed tubules with tunable charge and size. Other derivatives can be prepared by covalently linking two or more bile salt molecules to provide complex systems such as oligomers, dendrimers, and polymeric materials. The unconventional amphiphilic molecular structure imparts specific features to BSs and derivatives that can be exploited in the formulation of capsules, drug carriers, dispersants, and templates for the synthesis of nanomaterials.
The structural properties of the deep eutectic solvent (DES) formed by choline chloride (ChCl) and sesamol in 1 : 3 ratio have been investigated and compared to those of reline (ChCl : urea 1 : 2). ...An integrated approach combining small and wide angle X-ray scattering with molecular dynamics simulations has been employed and the simulation protocol has been validated against the experimental data. In the ChCl : sesamol DES, strong hydrogen bonds (HBs) are formed between the chloride anion and the hydroxyl groups of the choline and of sesamol molecules. Conversely, choline-choline, choline-sesamol and sesamol-sesamol interactions are negligible. A more extended interplay between the constituents is observed in reline where, besides the HBs involving the chloride anion, the eutectic formation is favored also by strong choline-urea and urea-urea interactions. The three-dimensional arrangement around the individual components shows that, in the ChCl : sesamol DES, the cholinium cations and the sesamol molecules are packed in such a way to maximize the interactions with the chlorine anion. This structural arrangement may favor the π-π interactions between the sesamol molecules and the aromatic species mediated by the chloride ions, providing an interpretation for the high separation rates previously observed for phenolic DESs towards aromatic compounds.
The structural properties of the choline chloride : sesamol 1 : 3 DES have been investigated by means of SWAXS measurements and MD simulations.
An in-depth study of the hydrophobic eutectic solvent formed by butylated hydroxytoluene (BHT) and l-menthol (MEN) in a 1:3 molar ratio has been carried out using an integrated approach that combines ...differential scanning calorimetry (DSC), attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy, small- and wide-angle X-ray scattering (SWAXS), and molecular dynamics (MD) simulations. The obtained data have been step-by-step compared to those collected on the eutectic formed by 3,5-di-tert-butyltoluene (TBT) and MEN in the same molar ratio, where TBT is analogous to the BHT without the hydroxyl group. The DSC characterization showed comparable results between the two systems, evidencing that the hydroxyl group of the BHT has little or no impact on the thermal behavior of the BHT:MEN eutectic. Both the FTIR and MD results agree in finding that no hydrogen bond (H-bond) interactions are played by the BHT because of the high steric hindrance suffered by its hydroxyl group so that the only established H-bonds are those between MEN molecules. The incompatibility between the components in terms of H-bonds formation results in hydrophobic segregation promoting the MEN–MEN interactions, which are even more intense than in the pure compound. The three-dimensional arrangement between the components showed a remarkable degree of structural order among the alkyl functional groups, suggesting that the apolar–apolar attraction might be the driving force of the eutectic formation. This picture is translated into the establishment of an intermediate-range organization in solution, as evidenced by the SWAXS data. The overall impact of this study is that of pushing a little bit further the definition of these eutectics, indicated until now as extensively H-bonded systems.
Condensation of DNA helices into hexagonally packed bundles and toroids represents an intriguing example of functional organization of biological macromolecules at the nanoscale. The condensation ...models are based on the unique polyelectrolyte features of DNA, however here we could reproduce a DNA‐like condensation with supramolecular helices of small chiral molecules, thereby demonstrating that it is a more general phenomenon. We show that the bile salt sodium deoxycholate can form supramolecular helices upon interaction with oppositely charged polyelectrolytes of homopolymer or block copolymers. At higher order, a controlled hexagonal packing of the helices into DNA‐like bundles and toroids could be accomplished. The results disclose unknown similarities between covalent and supramolecular non‐covalent helical polyelectrolytes, which inspire visionary ideas of constructing supramolecular versions of biological macromolecules. As drug nanocarriers the polymer–bile salt superstructures would get advantage of a complex chirality at molecular and supramolecular levels, whose effect on the nanocarrier assisted drug efficiency is a still unexplored fascinating issue.
Chiral bile salt biosurfactant with low molecular weight can self‐assemble into supramolecular helices by interaction with oppositely charged polymers. A controlled condensation of the supramolecular helices into DNA‐like hexagonally packed bundles and toroids can be achieved when using block copolymers of opposite charge and increasing the bile salt content.
In land plants and algae, the Calvin–Benson (CB) cycle takes place in the chloroplast, a specialized organelle in which photosynthesis occurs. Thioredoxins (TRXs) are small ubiquitous proteins, known ...to harmonize the two stages of photosynthesis through a thiol-based mechanism. Among the 11 enzymes of the CB cycle, the TRX target phosphoribulokinase (PRK) has yet to be characterized at the atomic scale. To accomplish this goal, we determined the crystal structures of PRK from two model species: the green alga Chlamydomonas reinhardtii (CrPRK) and the land plant Arabidopsis thaliana (AtPRK). PRK is an elongated homodimer characterized by a large central β-sheet of 18 strands, extending between two catalytic sites positioned at its edges. The electrostatic surface potential of the catalytic cavity has both a positive region suitable for binding the phosphate groups of substrates and an exposed negative region to attract positively charged TRX-f. In the catalytic cavity, the regulatory cysteines are 13 Å apart and connected by a flexible region exclusive to photosynthetic eukaryotes—the clamp loop—which is believed to be essential for oxidation-induced structural rearrangements. Structural comparisons with prokaryotic and evolutionarily older PRKs revealed that both AtPRK and CrPRK have a strongly reduced dimer interface and an increased number of random-coiled regions, suggesting that a general loss in structural rigidity correlates with gains in TRX sensitivity during the molecular evolution of PRKs in eukaryotes.
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