Aerobic nitrification of ammonia to nitrite and nitrate is a key process in the oceanic nitrogen cycling mediated by prokaryotes. Apart from Bacteria belonging to the - and -Proteobacteria involved ...in the first nitrification step, Crenarchaeota have recently been recognized as main drivers of the oxidation of ammonia to nitrite in soil as well as in the ocean, as indicated by the dominance of archaeal ammonia monooxygenase (amoA) genes over bacterial amoA. Evidence is accumulating that archaeal amoA genes are common in a wide range of marine systems. Essentially, all these reports focused on surface and mesopelagic (200-1,000 m depth) waters, where ammonia concentrations are higher than in waters below 1,000 m depth. However, Crenarchaeota are also abundant in the water column below 1,000 m, where ammonia concentrations are extremely low. Here we show that, throughout the North Atlantic Ocean, the abundance of archaeal amoA genes decreases markedly from subsurface waters to 4,000 m depth, and from subpolar to equatorial deep waters, leading to pronounced vertical and latitudinal gradients in the ratio of archaeal amoA to crenarchaeal 16S ribosomal RNA (rRNA) genes. The lack of significant copy numbers of amoA genes and the very low fixation rates of dark carbon dioxide in the bathypelagic North Atlantic suggest that most bathypelagic Crenarchaeota are not autotrophic ammonia oxidizers: most likely, they utilize organic matter and hence live heterotrophically.
Celotno besedilo
Dostopno za:
DOBA, IJS, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Summary
Due to climate change, sea ice experiences changes in terms of extent and physical properties. In order to understand how sea ice microbial communities are affected by changes in ...physicochemical properties of the ice, we used 454‐sequencing of 16S and 18S rRNA genes to examine environmental control of microbial diversity and composition in Antarctic sea ice. We observed a high diversity and richness of bacteria, which were strongly negatively correlated with temperature and positively with brine salinity. We suggest that bacterial diversity in sea ice is mainly controlled by physicochemical properties of the ice, such as temperature and salinity, and that sea ice bacterial communities are sensitive to seasonal and environmental changes. For the first time in Antarctic interior sea ice, we observed a strong eukaryotic dominance of the dinoflagellate phylotype SL163A10, comprising 63% of the total sequences. This phylotype is known to be kleptoplastic and could be a significant primary producer in sea ice. We conclude that mixotrophic flagellates may play a greater role in the sea ice microbial ecosystem than previously believed, and not only during the polar night but also during summer when potential food sources are abundant.
Summary
Alginate is a major cell wall polysaccharide from marine macroalgae and nutrient source for heterotrophic bacteria. Alginate can form gel particles in contact with divalent cations as found ...in seawater. Here, we tested the hypothesis that alginate gel particles serve as carbon source and microhabitat for marine bacteria by adding sterile alginate particles to microcosms with seawater from coastal California, a habitat rich in alginate‐containing macroalgae. Alginate particles were rapidly colonized and degraded, with three‐ to eightfold higher bacterial abundances and production among alginate particle‐associated (PA) bacteria. 16S rRNA gene amplicon sequencing showed that alginate PA bacteria were enriched in OTUs related to Cryomorphaceae, Saprospiraceae (Bacteroidetes) and Phaeobacter (Alphaproteobacteria) towards the end of the experiment. In microcosms amended with alginate particles and the proficient alginolytic bacterium Alteromonas macleodii strain 83‐1, this strain dominated the community and outcompeted Cryomorphaceae, Saprospiraceae and Phaeobacter, and PA hydrolytic activities were over 50% higher. Thus, alginolytic activity by strain 83‐1 did not benefit non‐alginolytic strains by cross‐feeding on alginate hydrolysis or other metabolic products. Considering the global distribution and extensive biomass of alginate‐containing macroalgae, the observed bacterial dynamics associated with the utilization and remineralization of alginate microhabitats promote the understanding of carbon cycling in macroalgae‐rich waters worldwide.
Photosynthetic microalgae are an attractive source of food, fuel, or nutraceuticals, but commercial production of microalgae is limited by low spatial efficiency. In the present study we developed a ...simple photosynthetic hydrogel system that cultivates the green microalga,
Marinichlorella kaistiae
KAS603, together with a novel strain of the bacteria,
Erythrobacter
sp. We tested the performance of the co-culture in the hydrogel using a combination of chlorophyll-
a
fluorimetry, microsensing, and bio-optical measurements. Our results showed that growth rates in algal–bacterial hydrogels were about threefold enhanced compared to hydrogels with algae alone. Chlorophyll-
a
fluorimetry–based light curves found that electron transport rates were enhanced about 20% for algal–bacterial hydrogels compared to algal hydrogels for intermediate irradiance levels. We also show that the living hydrogel is stable under different environmental conditions and when exposed to natural seawater. Our study provides a potential bio-inspired solution for problems that limit the space-efficient cultivation of microalgae for biotechnological applications.
Increased river loads are projected as one of the major consequences of climate change in the northern hemisphere, leading to elevated inputs of riverine dissolved organic matter (DOM) and inorganic ...nutrients to coastal ecosystems. The objective of this study was to investigate the effects of elevated DOM on a coastal pelagic food web from the coastal northern Baltic Sea, in a 32-day mesocosm experiment. In particular, the study addresses the response of bacterioplankton to differences in character and composition of supplied DOM. The supplied DOM differed in stoichiometry and quality and had pronounced effects on the recipient bacterioplankton, driving compositional changes in response to DOM type. The shifts in bacterioplankton community composition were especially driven by the proliferation of Bacteroidetes, Gemmatimonadetes, Planctomycetes, and Alpha- and Betaproteobacteria populations. The DOM additions stimulated protease activity and a release of inorganic nutrients, suggesting that DOM was actively processed. However, no difference between DOM types was detected in these functions despite different community compositions. Extensive release of re-mineralized carbon, nitrogen and phosphorus was associated with the bacterial processing, corresponding to 25-85% of the supplied DOM. The DOM additions had a negative effect on phytoplankton with decreased Chl
and biomass, particularly during the first half of the experiment. However, the accumulating nutrients likely stimulated phytoplankton biomass which was observed to increase towards the end of the experiment. This suggests that the nutrient access partially outweighed the negative effect of increased light attenuation by accumulating DOM. Taken together, our experimental data suggest that parts of the future elevated riverine DOM supply to the Baltic Sea will be efficiently mineralized by microbes. This will have consequences for bacterioplankton and phytoplankton community composition and function, and significantly affect nutrient biogeochemistry.
Summary
The number of icebergs produced from ice‐shelf disintegration has increased over the past decade in Antarctica. These drifting icebergs mix the water column, influence stratification and ...nutrient condition, and can affect local productivity and food web composition. Data on whether icebergs affect bacterioplankton function and composition are scarce, however. We assessed the influence of iceberg drift on bacterial community composition and on their ability to exploit carbon substrates during summer in the coastal Southern Ocean. An elevated bacterial production and a different community composition were observed in iceberg‐influenced waters relative to the undisturbed water column nearby. These major differences were confirmed in short‐term incubations with bromodeoxyuridine followed by CARD‐FISH. Furthermore, one‐week bottle incubations amended with inorganic nutrients and carbon substrates (a mix of substrates, glutamine, N‐acetylglucosamine, or pyruvate) revealed contrasting capacity of bacterioplankton to utilize specific carbon substrates in the iceberg‐influenced waters compared with the undisturbed site. Our study demonstrates that the hydrographical perturbations introduced by a drifting iceberg can affect activity, composition, and substrate utilization capability of marine bacterioplankton. Consequently, in a context of global warming, increased frequency of drifting icebergs in polar regions holds the potential to affect carbon and nutrient biogeochemistry at local and possibly regional scales.
Summary
Studies indicate that bacterial taxa utilize different fractions of the dissolved organic carbon (DOC) pool, while others suggest functional redundancy among constituents of bacterioplankton, ...implying only a weak coupling between community structure and function. We examined bacterial compositional and functional ectoenzymatic activities and growth efficiency; bacterial growth efficiency (BGE) responses to a gradient in bioavailable DOC (bDOC). This was achieved over 10 days in DOC utilization assays containing Baltic Sea water with variable amounts of natural bDOC. Measurements of bacterial growth, O2 and DOC consumption in the assays using non‐invasive sampling showed that BGE changed over time and that the bDOC utilized accounted for 4–13% of the DOC pool. Pyrosequencing of 16S rRNA genes demonstrated minor differences at the phylum level between samples, whereas larger successional differences were discernible at lower phylogenetic levels. Our study suggests that changes in concentrations of bDOC affect bacterioplankton BGE and community structure by selecting for some taxa while the relative abundance of most taxa remained unaffected. Ectoenzymes activities suggested preferential degradation of protein‐rich compounds by bacteria, switching to carbohydrate‐rich DOC when proteins were depleted. Hence, there was a fairly weak linkage between bacterial community composition and DOC utilization suggesting that overall bacterioplankton community structure only to some extent has predictive power for processing of the DOC pool.
Understanding the temporal variations and succession of bacterial communities involved in the turnover of one-carbon and methylated compounds is necessary to better predict bacterial impacts on the ...marine carbon cycle and air-sea carbon fluxes. The ability of the local bacterioplankton community to exploit one-carbon and methylated compounds as main source of bioavailable carbon during a productive and less productive period was assessed through enrichment experiments. Surface seawater was amended with methanol and trimethylamine-N-oxide (TMAO), and bacterial abundance, production, oxygen consumption, as well as methanol turnover and growth rates of putative methylotrophs were followed. Bacterial community structure and functional diversity was examined through amplicon sequencing of 16S rRNA and methanol dehydrogenase (mxaF) marker genes. 2-fold increase in oxygen consumption and bacterial growth rates, and up to 4-fold higher methanol assimilation were observed in the amended seawater samples. Capacity to drawdown the substrates was similar between both experiments. In less productive conditions, methanol enriched obligate methylotrophs, especially Methylophaga spp., accounted for ~70% of bacterial cells analyzed by fluorescence in situ hybridization and 16S rRNA gene sequencing, while TMAO enriched taxa belonged to Oceanospirillales and putative β- and γ-Proteobacterial methylotrophs. In the experiment performed during the more productive period, bacterial communities were structurally resistant, suggesting that facultative organisms may have dominated the observed methylotrophic activity. Moreover, enrichment of distinct methylotrophic taxa but similar activity rates observed in response to different substrate additions suggests a functional redundancy of substrate specific marine methylotrophic populations. Marine bacterioplankton cycling of one-carbon and methylated compounds appears to depend on the system productivity, and hence may have predictable temporal impacts on air-sea fluxes of volatile organic compounds.
Phytoplankton blooms in the Arctic marginal ice zone (MIZ) can be prolific dimethylsulfide (DMS) producers, thereby influencing regional aerosol formation and cloud radiative forcing. Here we ...describe the distribution of DMS and its precursor dimethylsulfoniopropionate (DMSP) across the Baffin Bay receding ice edge in early summer 2016. Overall, DMS and total DMSP (DMSPt) increased towards warmer waters of Atlantic origin concurrently with more advanced ice-melt and bloom stages. Relatively high DMS and DMSPt (medians of 6.3 and 70 nM, respectively) were observed in the surface layer (0–9 m depth), and very high values (reaching 74 and 524 nM, respectively) at the subsurface biomass maximum (15–30 m depth). Microscopic and pigment analyses indicated that subsurface DMS and DMSPt peaks were associated with Phaeocystis pouchetii, which bloomed in Atlantic-influenced waters and reached unprecedented biomass levels in Baffin Bay. In surface waters, DMS concentrations and DMS:DMSPt ratios were higher in the MIZ (medians of 12 nM and 0.15, respectively) than in fully ice-covered or ice-free conditions, potentially associated with enhanced phytoplanktonic DMSP release and bacterial DMSP cleavage (high dddP:dmdA gene ratios). Mean sea–air DMS fluxes (µmol m–2 d–1) increased from 0.3 in ice-covered waters to 10 in open waters (maximum of 26) owing to concurrent trends in near-surface DMS concentrations and physical drivers of gas exchange. Using remotely sensed sea-ice coverage and a compilation of sea–air DMS flux data, we estimated that the pan-Arctic DMS emission from the MIZ (EDMS, MIZ) was 5–13 Gg S yr–1. North of 80°N, EDMS, MIZ might have increased by around 10 ± 4% yr–1 between 2003 and 2014, likely exceeding open-water emissions in June and July. We conclude that EDMS, MIZ must be taken into account to evaluate plankton-climate feedbacks in the Arctic.
In spite of this apparent inhospitality, polar aquatic ecosystems host diverse and active microbial communities that drive biogeochemical cycles and support higher trophic levels (Cavicchioli, 2015; ...Pedros-Alio et al., 2015). Since polar regions are more strongly impacted by global change (Yoshimori et al., 2017) than temperate regions, there is an urgent need to understand how these perturbations will affect microbial functions and major elemental cycles, including carbon. ...as temperature rises, terrestrial permafrost thaws, which mobilizes ancient carbon that enters the ocean through freshwater discharge. ...changes in ocean circulation can have major effects on the biology of the pelagic ecosystem. ...polar benthic ecosystems are not likely to be spared from climate changes as seasonal shifts in surface communities are associated with microbial communities in the sediments (Learman et al.; Franco et al.).
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