Background: Endodontic infections require effective removal of microorganisms from the root canal system for long-term prognosis. Sodium hypochlorite (NaOCl) is the most effective irrigant currently, ...but potential complications due to its toxicity warrant search for newer alternatives. In this study, the antimicrobial efficacy of Morinda citrifolia (MC), green tea polyphenols and Triphala was compared with 5% NaOCl against Enterococcus faecalis.
Materials and Methods: In this in vitro study sixty extracted human premolar teeth were infected with E. faecalis, a Group D Streptococci for 48 h. At the end of 48 h, the vital bacterial population was assessed by counting the number of colony-forming units (CFUs) on blood agar plate. Samples were divided into five groups; Group I (distilled water), Group II (NaOCl), Group III (MC), Group IV (Triphala), and Group V (green tea polyphenols). The samples were irrigated with individual test agents and CFUs were recorded. Kruskal-Wallis test was performed as the parametric test to compare different groups. Student's t-test was used to compare mean values between groups before and after treatment with test agents (P < 0.001).
Results: NaOCl was the most effective irrigant the elimination of E. faecalis reinforcing its role as the best irrigant available currently and a gold standard for comparison of the experimental groups. Its antibacterial effect was comparable to Triphala. Among the experimental groups, MC showed the minimum antibacterial effect.
Conclusion: The use of herbal alternatives as a root canal irrigant might prove to be advantageous considering the several undesirable characteristics of NaOCl.
The ALICE data acquisition system Carena, F.; Carena, W.; Chapeland, S. ...
Nuclear instruments & methods in physics research. Section A, Accelerators, spectrometers, detectors and associated equipment,
03/2014, Letnik:
741
Journal Article
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In this paper we describe the design, the construction, the commissioning and the operation of the Data Acquisition (DAQ) and Experiment Control Systems (ECS) of the ALICE experiment at the CERN ...Large Hadron Collider (LHC).
The DAQ and the ECS are the systems used respectively for the acquisition of all physics data and for the overall control of the experiment. They are two computing systems made of hundreds of PCs and data storage units interconnected via two networks. The collection of experimental data from the detectors is performed by several hundreds of high-speed optical links.
We describe in detail the design considerations for these systems handling the extreme data throughput resulting from central lead ions collisions at LHC energy. The implementation of the resulting requirements into hardware (custom optical links and commercial computing equipment), infrastructure (racks, cooling, power distribution, control room), and software led to many innovative solutions which are described together with a presentation of all the major components of the systems, as currently realized. We also report on the performance achieved during the first period of data taking (from 2009 to 2013) often exceeding those specified in the DAQ Technical Design Report.
ALICE (A Large Ion Collider Experiment) is a heavy-ion detector studying the physics of strongly interacting matter and the quark-gluon plasma at the CERN LHC (Large Hadron Collider). The ALICE ...Data-AcQuisition (DAQ) system handles the data flow from the sub-detector electronics to the permanent data storage in the CERN computing center. The DAQ farm consists of about 1000 devices of many different types ranging from direct accessible machines to storage arrays and custom optical links. The system performance monitoring tool used during the LHC run 1 will be replaced by a new tool for run 2. This paper shows the results of an evaluation that has been conducted on six publicly available monitoring tools. The evaluation has been carried out by taking into account selection criteria such as scalability, flexibility, reliability as well as data collection methods and display. All the tools have been prototyped and evaluated according to those criteria. We will describe the considerations that have led to the selection of the Zabbix monitoring tool for the DAQ farm. The results of the tests conducted in the ALICE DAQ laboratory will be presented. In addition, the deployment of the software on the DAQ machines in terms of metrics collected and data collection methods will be described. We will illustrate how remote nodes are monitored with Zabbix by using SNMP-based agents and how DAQ specific metrics are retrieved and displayed. We will also show how the monitoring information is accessed and made available via the graphical user interface and how Zabbix communicates with the other DAQ online systems for notification and reporting.
The ALICE DAQ infoLogger Chapeland, S; Carena, F; Carena, W ...
Journal of physics. Conference series,
01/2014, Letnik:
513, Številka:
1
Journal Article
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ALICE (A Large Ion Collider Experiment) is a heavy-ion experiment studying the physics of strongly interacting matter and the quark-gluon plasma at the CERN LHC (Large Hadron Collider). The ALICE DAQ ...(Data Acquisition System) is based on a large farm of commodity hardware consisting of more than 600 devices (Linux PCs, storage, network switches). The DAQ reads the data transferred from the detectors through 500 dedicated optical links at an aggregated and sustained rate of up to 10 Gigabytes per second and stores at up to 2.5 Gigabytes per second. The infoLogger is the log system which collects centrally the messages issued by the thousands of processes running on the DAQ machines. It allows to report errors on the fly, and to keep a trace of runtime execution for later investigation. More than 500000 messages are stored every day in a MySQL database, in a structured table keeping track for each message of 16 indexing fields (e.g. time, host, user, ...). The total amount of logs for 2012 exceeds 75GB of data and 150 million rows. We present in this paper the architecture and implementation of this distributed logging system, consisting of a client programming API, local data collector processes, a central server, and interactive human interfaces. We review the operational experience during the 2012 run, in particular the actions taken to ensure shifters receive manageable and relevant content from the main log stream. Finally, we present the performance of this log system, and future evolutions.
The ALICE data quality monitoring system Haller, B von; Telesca, A; Chapeland, S ...
Journal of physics. Conference series,
12/2011, Letnik:
331, Številka:
2
Journal Article
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ALICE (A Large Ion Collider Experiment) is the heavy-ion detector designed to study the physics of strongly interacting matter and the quark-gluon plasma at the CERN Large Hadron Collider (LHC). The ...online Data Quality Monitoring (DQM) is a key element of the Data Acquisition's software chain. It provide shifters with precise and complete information to quickly identify and overcome problems, and as a consequence to ensure acquisition of high quality data. DQM typically involves the online gathering, the analysis by user-defined algorithms and the visualization of monitored data. This paper describes the final design of ALICE'S DQM framework called AMORE (Automatic MOnitoRing Environment), as well as its latest and coming features like the integration with the offline analysis and reconstruction framework, a better use of multi-core processors by a parallelization effort, and its interface with the eLogBook. The concurrent collection and analysis of data in an online environment requires the framework to be highly efficient, robust and scalable. We will describe what has been implemented to achieve these goals and the procedures we follow to ensure appropriate robustness and performance. We finally review the wide range of usages people make of this framework, from the basic monitoring of a single sub-detector to the most complex ones within the High Level Trigger farm or using the Prompt Reconstruction and we describe the various ways of accessing the monitoring results. We conclude with our experience, before and after the LHC startup, when monitoring the data quality in a challenging environment.
We conducted this study to compare the incidence of coronary artery dilatation in children with Incomplete and Classical Kawasaki disease, diagnosed as per AHA criteria. Subjects were included on a ...retrospective review of records (2002-2007); those with a discharge diagnosis of Kawasaki disease were enrolled. A total of 29 patients were identified (3.1 per 1000 pediatric admissions), out of which 22 were boys (median age: 4.8 years; range: 4 months-11 years). Seventeen (58.6%) had Classical KD and twelve (41.4%) children had Incomplete KD. All children received IVIG and underwent echocardiography. Coronary involvement was more in Incomplete KD (11/12 = 91.6%) as compared to Classical KD (7/17= 41.1%). The sensitivity, specificity and predictive value of AHA criteria to detect coronary artery dilatation was 39%, 9%, and 41%, respectively. We conclude that children presenting with Incomplete Kawasaki disease are at a higher risk of coronary artery abnormalities.
Preparing the ALICE DAQ upgrade Carena, F; Carena, W; Chapeland, S ...
Journal of physics. Conference series,
01/2012, Letnik:
396, Številka:
1
Journal Article
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In November 2009, after 15 years of design and installation, the ALICE experiment started to detect and record the first collisions produced by the LHC. It has been collecting hundreds of millions of ...events ever since with both proton and heavy ion collisions. The future scientific programme of ALICE has been refined following the first year of data taking. The physics targeted beyond 2018 will be the study of rare signals. Several detectors will be upgraded, modified, or replaced to prepare ALICE for future physics challenges. An upgrade of the triggering and readout systems is also required to accommodate the needs of the upgraded ALICE and to better select the data of the rare physics channels. The ALICE upgrade will have major implications in the detector electronics and controls, data acquisition, event triggering and offline computing and storage systems. Moreover, the experience accumulated during more than two years of operation has also lead to new requirements for the control software. We will review all these new needs and the current R&D activities to address them. Several papers of the same conference present in more details some elements of the ALICE online system.
ALICE moves into warp drive Carena, F; Carena, W; Chapeland, S ...
Journal of physics. Conference series,
01/2012, Letnik:
396, Številka:
1
Journal Article
Recenzirano
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A Large Ion Collider Experiment (ALICE) is the heavy-ion detector designed to study the physics of strongly interacting matter and the quark-gluon plasma at the CERN Large Hadron Collider (LHC). ...Since its successful start-up in 2010, the LHC has been performing outstandingly, providing to the experiments long periods of stable collisions and an integrated luminosity that greatly exceeds the planned targets. To fully explore these privileged conditions, we aim at maximizing the experiment's data taking productivity during stable collisions. We present in this paper the evolution of the online systems towards helping us understand reasons of inefficiency and address new requirements. This paper describes the features added to the ALICE Electronic Logbook (eLogbook) to allow the Run Coordination team to identify, prioritize, fix and follow causes of inefficiency in the experiment. Thorough monitoring of the data taking efficiency provides reports for the collaboration to portray its evolution and evaluate the measures (fixes and new features) taken to increase it. In particular, the eLogbook helps decision making by providing quantitative input, which can be used to better balance risks of changes in the production environment against potential gains in quantity and quality of physics data. It will also present the evolution of the Experiment Control System (ECS) to allow on-the-fly error recovery actions of the detector apparatus while limiting as much as possible the loss of integrated luminosity. The paper will conclude with a review of the ALICE efficiency so far and the future plans to improve its monitoring.
The ALICE Electronic Logbook Altini, V; Carena, F; Carena, W ...
Journal of physics. Conference series,
04/2010, Letnik:
219, Številka:
2
Journal Article
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All major experiments need tools that provide a way to keep a record of the events and activities, both during commissioning and operations. In ALICE (A Large Ion Collider Experiment) at CERN, this ...task is performed by the Alice Electronic Logbook (eLogbook), a custom-made application developed and maintained by the Data-Acquisition group (DAQ). Started as a statistics repository, the eLogbook has evolved to become not only a fully functional electronic logbook, but also a massive information repository used to store the conditions and statistics of the several online systems. It's currently used by more than 600 users in 30 different countries and it plays an important role in the daily ALICE collaboration activities. This paper will describe the LAMP (Linux, Apache, MySQL and PHP) based architecture of the eLogbook, the database schema and the relevance of the information stored in the eLogbook to the different ALICE actors, not only for near real time procedures but also for long term data-mining and analysis. It will also present the web interface, including the different used technologies, the implemented security measures and the current main features. Finally it will present the roadmap for the future, including a migration to the web 2.0 paradigm, the handling of the database ever-increasing data volume and the deployment of data-mining tools.
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