The Great Hungarian Plain was a crossroads of cultural transformations that have shaped European prehistory. Here we analyse a 5,000-year transect of human genomes, sampled from petrous bones giving ...consistently excellent endogenous DNA yields, from 13 Hungarian Neolithic, Copper, Bronze and Iron Age burials including two to high (~22 × ) and seven to ~1 × coverage, to investigate the impact of these on Europe's genetic landscape. These data suggest genomic shifts with the advent of the Neolithic, Bronze and Iron Ages, with interleaved periods of genome stability. The earliest Neolithic context genome shows a European hunter-gatherer genetic signature and a restricted ancestral population size, suggesting direct contact between cultures after the arrival of the first farmers into Europe. The latest, Iron Age, sample reveals an eastern genomic influence concordant with introduced Steppe burial rites. We observe transition towards lighter pigmentation and surprisingly, no Neolithic presence of lactase persistence.
Events mediating transformation from the pre-malignant monoclonal gammopathy of undetermined significance (MGUS) to multiple myeloma (MM) are unknown. We analyzed gene expression data sets generated ...on the Affymetrix U133 platform from 22 MGUS and 101 MM patients using gene-set enrichment analysis. Genes overexpressed in MM were enriched for cell cycle, proliferation and MYC activation gene sets. Upon dissecting the relationship between MYC and cell-cycle gene sets, we identified and validated an MYC activation signature dissociated from proliferation. Applying this signature, MYC is activated in 67% of myeloma, but not in MGUS. This was further confirmed by immunohistochemistry (IHC) using membrane CD138 and nuclear MYC double staining. We also showed that almost all tumors with RAS mutations expressed the MYC activation signature, and multiple mechanisms may be involved in activating MYC. MYC activation, whether assessed by gene-expression signature or IHC, is associated with hyperdiploid MM and shorter survival even in tumors that are not proliferative. Bortezomib treatment is able to overcome the survival disadvantage in patients with MYC activation.
Amazon forest response to repeated droughts Feldpausch, T. R.; Phillips, O. L.; Brienen, R. J. W. ...
Global biogeochemical cycles,
July 2016, Letnik:
30, Številka:
7
Journal Article
Recenzirano
Odprti dostop
The Amazon Basin has experienced more variable climate over the last decade, with a severe and widespread drought in 2005 causing large basin‐wide losses of biomass. A drought of similar ...climatological magnitude occurred again in 2010; however, there has been no basin‐wide ground‐based evaluation of effects on vegetation. We examine to what extent the 2010 drought affected forest dynamics using ground‐based observations of mortality and growth from an extensive forest plot network. We find that during the 2010 drought interval, forests did not gain biomass (net change: −0.43 Mg ha−1, confidence interval (CI): −1.11, 0.19, n = 97), regardless of whether forests experienced precipitation deficit anomalies. This contrasted with a long‐term biomass sink during the baseline pre‐2010 drought period (1998 to pre‐2010) of 1.33 Mg ha−1 yr−1 (CI: 0.90, 1.74, p < 0.01). The resulting net impact of the 2010 drought (i.e., reversal of the baseline net sink) was −1.95 Mg ha−1 yr−1 (CI:−2.77, −1.18; p < 0.001). This net biomass impact was driven by an increase in biomass mortality (1.45 Mg ha−1 yr−1 CI: 0.66, 2.25, p < 0.001) and a decline in biomass productivity (−0.50 Mg ha−1 yr−1, CI:−0.78, −0.31; p < 0.001). Surprisingly, the magnitude of the losses through tree mortality was unrelated to estimated local precipitation anomalies and was independent of estimated local pre‐2010 drought history. Thus, there was no evidence that pre‐2010 droughts compounded the effects of the 2010 drought. We detected a systematic basin‐wide impact of the 2010 drought on tree growth rates across Amazonia, which was related to the strength of the moisture deficit. This impact differed from the drought event in 2005 which did not affect productivity. Based on these ground data, live biomass in trees and corresponding estimates of live biomass in lianas and roots, we estimate that intact forests in Amazonia were carbon neutral in 2010 (−0.07 Pg C yr−1 CI:−0.42, 0.23), consistent with results from an independent analysis of airborne estimates of land‐atmospheric fluxes during 2010. Relative to the long‐term mean, the 2010 drought resulted in a reduction in biomass carbon uptake of 1.1 Pg C, compared to 1.6 Pg C for the 2005 event.
Key Points
During the 2010 drought interval, Amazon forests did not gain biomass, regardless of whether forests experienced precipitation deficit anomalies
Biomass losses were partially driven by a decline in productivity related to precipitation anomalies
Pre‐2010 droughts did not compound the effects of the 2010 drought
Pore-forming toxins (PFTs) are the most common class of bacterial protein toxins and constitute important bacterial virulence factors. The mode of action of PFT is starting to be better understood. ...In contrast, little is known about the cellular response to this threat. Recent studies reveal that cells do not just swell and lyse, but are able to sense and react to pore formation, mount a defense, even repair the damaged membrane and thus survive. These responses involve a variety of signal-transduction pathways and sophisticated cellular mechanisms such as the pathway regulating lipid metabolism. In this review we discuss the different classes of bacterial PFTs and their modes of action, and provide examples of how the different bacteria use PFTs. Finally, we address the more recent field dealing with the eukaryotic cell response to PFT-induced damage.
Key message
Here, we provide an updated set of guidelines for naming genes in wheat that has been endorsed by the wheat research community.
The last decade has seen a proliferation in genomic ...resources for wheat, including reference- and pan-genome assemblies with gene annotations, which provide new opportunities to detect, characterise, and describe genes that influence traits of interest. The expansion of genetic information has supported growth of the wheat research community and catalysed strong interest in the genes that control agronomically important traits, such as yield, pathogen resistance, grain quality, and abiotic stress tolerance. To accommodate these developments, we present an updated set of guidelines for gene nomenclature in wheat. These guidelines can be used to describe loci identified based on morphological or phenotypic features or to name genes based on sequence information, such as similarity to genes characterised in other species or the biochemical properties of the encoded protein. The updated guidelines provide a flexible system that is not overly prescriptive but provides structure and a common framework for naming genes in wheat, which may be extended to related cereal species. We propose these guidelines be used henceforth by the wheat research community to facilitate integration of data from independent studies and allow broader and more efficient use of text and data mining approaches, which will ultimately help further accelerate wheat research and breeding.
We extend the scope of European palaeogenomics by sequencing the genomes of Late Upper Palaeolithic (13,300 years old, 1.4-fold coverage) and Mesolithic (9,700 years old, 15.4-fold) males from ...western Georgia in the Caucasus and a Late Upper Palaeolithic (13,700 years old, 9.5-fold) male from Switzerland. While we detect Late Palaeolithic-Mesolithic genomic continuity in both regions, we find that Caucasus hunter-gatherers (CHG) belong to a distinct ancient clade that split from western hunter-gatherers ∼45 kya, shortly after the expansion of anatomically modern humans into Europe and from the ancestors of Neolithic farmers ∼25 kya, around the Last Glacial Maximum. CHG genomes significantly contributed to the Yamnaya steppe herders who migrated into Europe ∼3,000 BC, supporting a formative Caucasus influence on this important Early Bronze age culture. CHG left their imprint on modern populations from the Caucasus and also central and south Asia possibly marking the arrival of Indo-Aryan languages.
The potential for Planck to detect clusters of dusty, star-forming galaxies at z > 1 is tested by examining the Herschel-SPIRE images of Planck Early Release Compact Source Catalog sources lying in ...fields observed by the Herschel Multitiered Extragalactic Survey. Of the 16 Planck sources that lie in the ∼90 sq. deg. examined, we find that 12 are associated with single bright Herschel sources. The remaining four are associated with overdensities of Herschel sources, making them candidate clusters of dusty, star-forming galaxies. We use complementary optical/near-IR data for these 'clumps' to test this idea, and find evidence for the presence of galaxy clusters in all four cases. We use photometric redshifts and red sequence galaxies to estimate the redshifts of these clusters, finding that they range from 0.8 to 2.3. These redshifts imply that the Herschel sources in these clusters, which contribute to the detected Planck flux, are forming stars very rapidly, with typical total cluster star formation rates >1000 M yr−1. The high-redshift clusters discovered in these observations are used to constrain the epoch of cluster galaxy formation, finding that the galaxies in our clusters are 1-1.5 Gyr old at z ∼ 1-2. Prospects for the discovery of further clusters of dusty galaxies are discussed, using not only all sky Planck surveys, but also deeper, smaller area, Herschel surveys.
We analyze the star formation properties of 16 infrared-selected, spectroscopically confirmed galaxy clusters at 1 < z < 1.5 from the Spitzer/IRAC Shallow Cluster Survey (ISCS). We present new ...spectroscopic confirmation for six of these high-redshift clusters, five of which are at z > 1.35. Using infrared luminosities measured with deep Spitzer/Multiband Imaging Photometer for Spitzer observations at 24 mu m, along with robust optical + IRAC photometric redshifts and spectral-energy-distribution-fitted stellar masses, we present the dust-obscured star-forming fractions, star formation rates, and specific star formation rates in these clusters as functions of redshift and projected clustercentric radius. We find that z ~ 1.4 represents a transition redshift for the ISCS sample, with clear evidence of an unquenched era of cluster star formation at earlier times. Beyond this redshift, the fraction of star-forming cluster members increases monotonically toward the cluster centers. Indeed, the specific star formation rate in the cores of these distant clusters is consistent with field values at similar redshifts, indicating that at z > 1.4 environment-dependent quenching had not yet been established in ISCS clusters. By combining these observations with complementary studies showing a rapid increase in the active galactic nucleus (AGN) fraction, a stochastic star formation history, and a major merging episode at the same epoch in this cluster sample, we suggest that the starburst activity is likely merger-driven and that the subsequent quenching is due to feedback from merger-fueled AGNs. The totality of the evidence suggests we are witnessing the final quenching period that brings an end to the era of star formation in galaxy clusters and initiates the era of passive evolution.
Abstract
Oriented cell division is a fundamental mechanism to control asymmetric stem cell division, neural tube elongation and body axis extension, among other processes. During zebrafish ...gastrulation, when the body axis extends, dorsal epiblast cells display divisions that are robustly oriented along the animal-vegetal embryonic axis. Here, we use a combination of lipidomics, metabolic tracer analysis and quantitative image analysis to show that sphingolipids mediate spindle positioning during oriented division of epiblast cells. We identify the Wnt signaling as a regulator of sphingolipid synthesis that mediates the activity of serine palmitoyltransferase (SPT), the first and rate-limiting enzyme in sphingolipid production. Sphingolipids determine the palmitoylation state of the Anthrax receptor, which then positions the mitotic spindle of dividing epiblast cells. Our data show how Wnt signaling mediates sphingolipid-dependent oriented division and how sphingolipids determine Anthrax receptor palmitoylation, which ultimately controls the activation of Diaphanous to mediate spindle rotation and oriented mitosis.
This paper presents the characterization of a flat panel photobioreactor (0.07
m wide, 1.5
m height and 2.5
m length) for the production of microalgae. Several factors are considered. The orientation ...was studied first resulting east/west the most favourable because the total solar radiation intercepted was maximum, increasing 5% with regard to horizontal placement, and the exposure resulted to be the most homogeneous over the year. Then, gas holdup, mass transfer, mixing and heat transfer were studied as a function of the aeration rate. This is a key operating variable because it determines the power supply, which governs the fluid-dynamics of the system and subsequently influences other transport phenomena. The gas holdup and mass transfer coefficient found were consistent with referenced values for bubble columns observed in tubular photobioreactor. A power supply of 53
W/m
3 promoted a mass transfer rate high enough to avoid the excessive accumulation of dissolved oxygen in this flat panel photobioreactor. This is similar to the 40
W/m
3 necessary in bubble columns and much lower than the 2000–3000
W/m
3 required in tubular photobioreactors. However, this power supply is in the order of magnitude of 100
W/m
3, which has been reported to damage some microalgal cells, whereas no damage has been referenced in tubular photobioreactors. Even at low power supplies the mixing time was shorter than 200
s, longer than the 60
s measured for bubble columns, but quite faster than the typical values found for tubular photobioreactors (1–10
h). With regard to heat transfer, global coefficients were determined for the internal heat exchanger and for the external surface of the photobioreactor. The observed behaviour was similar to that referenced for bubble columns, although the values of heat transfer coefficients measured were lower than in bubble columns. The heat transfer coefficient of the internal heat exchanger (over 500
W/m
2
K) was much higher than the coefficient of the external surface of the reactor (30
W/m
2
K). Internal heat exchangers are therefore useful to control the temperature of the culture in this type of photobioreactor. The major disadvantage of this reactor is the potential high stress damage associated with aeration. The main advantages are the low power consumption (53
W/m
3) and the high mass transfer capacity (0.007
1/s). The characterization carried out allows improving the design and establishing the proper operating conditions for the production of microalgae using this type of photobioreactor.
PDF
