Incorporating legumes is one option for improving pasture fertility, sustainability, and biodiversity. Diazotrophic microorganisms, including rhizobia that form symbioses with legumes, represent a ...small fraction of the total soil microbial community. Yet, they can offset nitrogen (N) fertilizer inputs through their ability to convert atmospheric N2 into plant‐usable N via biological N2 fixation (BNF). This study used amplicon sequencing of 16S rRNA genes to investigate soil bacterial community composition and diversity in grazed ‘Argentine’ bahiagrass (Paspalum notatum Flügge) pastures where N fertilizer was supplanted with legume‐derived N from BNF in some treatments. Treatments consisted of bahiagrass fertilized with (a) mineral N (224 kg N ha–1 yr–1), (b) combination mineral N (34 kg N ha–1 yr–1) and legume‐derived N via cool‐season clover (CSC) (Trifolium spp.) mix, or (c) combination mineral N (34 kg N ha–1 yr–1) and legume‐derived N via CSC mix and strips of Ecoturf rhizoma peanut (Arachis glabrata Benth.). Bradyrhizobium spp. relative abundance was 44% greater in the mixed pasture. Other bacterial genera with BNF or denitrification potentials were greater in pastures with legumes, whereas sequences assigned to genera associated with high litter turnover were greater in bahiagrass pastures receiving only mineral N. Soil bacteria alpha diversity was greater in pastures receiving 34 kg ha–1 yr–1 N fertilizer application and the CSC mix than in pastures with the CSC mix and rhizoma peanut strips. Our results demonstrate soil microbial community shifts that may affect soil C and N cycling in pastures common to the southeastern United States.
Core Ideas
Soil bacterial community composition in bahiagrass pastures was altered by N management.
Legume incorporation promoted relative abundance of N‐cycling bacteria.
Soil bacteria alpha diversity did not coincide with vegetation diversity.
Tropospheric ozone (O3), a major air pollutant, leads to significant global yield loss in soybean Glycine max (L.) Merr.. Soybean cultivar ‘Jake’ shows O3 resilient traits in above-ground organs, but ...the root system remains sensitive to elevated O3 (eO3). Changing carbon (C) and nitrogen (N) resource composition during eO3 stress suggests that eO3 presumably alters belowground soil microbial communities and their driven nutrient transformation. Yet, the responses of belowground microbes to eO3 and their feedback on nutrient cycling in ‘Jake’ are unknown. In this study, we holistically investigated soil microbial communities associated with C and N dynamics and bacterial-fungal inter-kingdom networks in the rhizosphere and bulk soil at different developmental stages of ‘Jake’ grown under sub-ambient O3 charcoal-filtered (CF) air, 12 h mean: 20 ppb or eO3 (12 h mean: 87 ppb). The results demonstrated eO3 significantly decreased fungal diversity and complexity of microbial networks at different ‘Jake’ developmental stages, whereas bacterial diversity was more tolerant to eO3 in both bulk soil and rhizosphere. In the bulk soil, no O3-responsive microbial biomarkers were found to be associated with C and N content, implying eO3 may stimulate niche-based processes during ‘Jake’ growth. In contrast, this study identified O3-responsive microbial biomarkers that may contribute to the N acquisition (Chloroflexales) and C dynamics (Caldilineales, Thermomicrobiales, and Hypocreales) in the rhizosphere, which may support the O3 resilience of the ‘Jake’ cultivar. However, further investigation is required to confirm their specific contributions by determining changes in microbial gene expression. Overall, these findings conduce to an expanding knowledge base that O3 induces temporal and spatial changes in the effects of microbial and nutrient networks in the O3-tolerant agriculture ecosystems.
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•eO3 decreased fungal diversity, whereas bacterial diversity was more tolerant to eO3.•eO3 decreased complexity of microbial networks throughout ‘Jake’ development.•eO3 induces nutrient-based processes by impacting microbial networks during ‘Jake’ growth.
Hemorrhagic transformation after acute ischemic stroke is a life-threatening disease that currently has no effective chemotherapy. Zhilong Huoxue Tongyu Capsule (ZL) is an empirical prescription of ...traditional Chinese medicine that is used to prevent and treat cardiovascular and cerebrovascular diseases in China. However, only a few studies have addressed the mechanisms of ZL in treating hemorrhagic transformation.
To evaluate the anti-inflammatory effects of ZL on hemorrhagic transformation model rats and lipopolysaccharide (LPS)-induced RAW264.7 macrophages and to explore the underlying molecular mechanisms.
Murine RAW264.7 cells were treated with ZL and LPS (1 μg/mL), and cell viability was detected by cell counting kit-8 assay. RT-qPCR was used to detect the expression of inflammatory chemokines, microRNA let-7a/e/i/f, toll like receptor 4 (TLR4), myeloid differentiation factor 88 (MyD88), and nuclear factor kappa-B (NF-κB) p65. The protein expression levels of TLR4, MyD88, NF-κB p65, and apoptosis related molecules were determined by Western blotting. The apoptosis rate of RAW264.7 macrophages was detected by Annexin V-FITC/PI double staining. A hemorrhagic transformation model in rats was established by intraperitoneal injection of high glucose solution combined with thread embolization. Then, the model rats were observed behaviourally, pathologically, and molecularly. The gene expression of TLR4, MyD88, and NF-κB p65 was measured by RT-qPCR and used to evaluate the protective effect of ZL against hemorrhagic transformation in rats.
ZL (5, 20, 40 μg/mL) was beneficial in cell proliferation. LPS (1 μg/mL) stimulated the production of inflammatory chemokines and inhibited the production of let-7a/e/i/f, with let-7f being influenced most strongly. Moreover, overexpression of let-7f decreased the gene and protein levels of TLR4, MyD88, and NF-κB p65, downregulated TLR4, and inhibited its transcriptional activity. ZL (5, 20, and 40 μg·mL-1) inhibited the production of TLR4, MyD88, and NF-κB p65 and promoted the production of let-7f in a concentration-dependent manner. Furthermore, the blockade of TLR4 antagonized the promoting effects of TLR4 pathway activation in cell inflammation and apoptosis by downregulating let-7f. Critically, it was confirmed in vivo and in vitro that ZL upregulated the expression of let-7f and inhibited the gene expression of TLR4, MyD88, and NF-κB p65 to reduce inflammatory cell infiltration, which determined the occurrence of hemorrhagic transformation.
ZL can reduce inflammatory response by upregulating let-7f and subsequently inhibiting the TLR4 signaling pathway, thereby decreasing the occurrence of hemorrhagic transformation.
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All cancers increase developing venous thromboembolism risk, and VTE is the second-leading cause of death among cancer patients. The anticoagulant drugs are considered to be the optimal treatment for ...patients with cancer-associated VTE. However, there is still controversy whether rivaroxaban, a new oral anticoagulant, can lead to better outcomes globally.
We will search PubMed, Web of Science, Cochrane Central Register of Controlled Trials and China National Knowledge Infrastructure for relevant published studies before 1 September, 2019, without any language restrictions. Only published randomized controlled trials that meet the inclusion criteria will be included. Subgroup analysis of the type of cancer, the type of VTE, cancer stage, age, sex, ethnicity, history of smoking and drinking as well as the mean, dose and duration of anticoagulants will be performed.
Our study aims to estimate the efficacy and safety of rivaroxaban for patients with cancer-associated VTE and to provide recommendations to key stakeholders.
PROSPERO, October 23, 2019, CRD42019143265, https://www.crd.york.ac.uk/PROSPERO/display_record.php?RecordID=143265.
Grasses harbor diverse fungi, including some that produce mycotoxins or other secondary metabolites. Recently, Florida cattle farmers reported cattle illness, while the cattle were grazing on ...warm-season grass pastures, that was not attributable to common causes, such as nutritional imbalances or nitrate toxicity. To understand correlations between grass mycobiome and mycotoxin production, we investigated the mycobiomes associated with five prominent, perennial forage and weed grasses Paspalum notatum Flügge, Cynodon dactylon (L.) Pers., Paspalum nicorae Parodi, Sporobolus indicus (L.) R. Br., and Andropogon virginicus (L.) collected from six Florida pastures actively grazed by livestock. Black fungal stromata of
and
were observed on
and
leaves and were investigated. High-throughput amplicon sequencing was applied to delineate leaf mycobiomes. Mycotoxins from
leaves were inspected using liquid chromatography-mass spectrometry (LC-MS/MS). Grass species, cultivars, and geographic localities interactively affected fungal community assemblies of asymptomatic leaves. Among the grass species, the greatest fungal richness was detected in the weed
. The black fungal structures of
leaves were dominated by the genus
, while those of
were codominated by the genus
and a hypermycoparasitic fungus of the genus
. When comparing mycotoxins detected in
leaves with and without
, emodin, an anthraquinone, was the only compound which was significantly different (
< 0.05). Understanding the leaf mycobiome and the mycotoxins it may produce in warm-season grasses has important implications for how these associations lead to secondary metabolite production and their subsequent impact on animal health.
The leaf mycobiome of forage grasses can have a major impact on their mycotoxin contents of forage and subsequently affect livestock health. Despite the importance of the cattle industry in warm-climate regions, such as Florida, studies have been primarily limited to temperate forage systems. Our study provides a holistic view of leaf fungi considering epibiotic, endophytic, and hypermycoparasitic associations with five perennial, warm-season forage and weed grasses. We highlight that plant identity and geographic location interactively affect leaf fungal community composition. Yeasts appeared to be an overlooked fungal group in healthy forage mycobiomes. Furthermore, we detected high emodin quantities in the leaves of a widely planted forage species (
) whenever epibiotic fungi occurred. Our study demonstrated the importance of identifying fungal communities, ecological roles, and secondary metabolites in perennial, warm-season grasses and their potential for interfering with livestock health.
Adenomyosis is linked to dysmenorrhea and infertility. The pathogenesis of adenomyosis remains unclear, and little is known of the genetic and epigenetic changes in the eutopic endometrium in ...adenomyosis, which may predispose patients to the invasion and migration of endometrial tissues into the myometrium. Transcriptome studies have identified genes related to various cell behaviors but no targets for therapeutic intervention. The epigenetics of the eutopic endometrium in adenomyosis have rarely been investigated. Endometrial tissue was obtained from premenopausal women with (
= 32) or without adenomyosis (
= 17) who underwent hysterectomy aged 34-57 years at a tertiary hospital. The methylome and transcriptome were assessed by using a Methylation 450 K BeadChip array and Affymetrix expression microarray. Protein expression was examined by immunohistochemistry. Differential methylation analysis revealed 53 lowly methylated genes and 176 highly methylated genes with consistent gene expression in adenomyosis, including three genes encoding potassium ion channels. High expression of KCNK9 in the eutopic and ectopic endometria in patients with adenomyosis but not in normal controls was observed. Hormone-free, antibody-based KCNK9 targeting is a potential therapeutic strategy for adenomyosis-related dysmenorrhea, menorrhagia, and infertility.
Sunn hemp (Crotalaria juncea L.) is a warm‐season legume often used as a cover crop; however, there is limited information about nutrient cycling of sunn hemp residue. The objective of this study was ...to evaluate the effect of sunn hemp genotype and residue management on plant characteristics, decomposition, and suppression of Fusarium, Pythium, Sclerotinia, and Sclerotium microbe species. Two field experiments were conducted in Ona, FL. In Experiment 1, treatments were the split‐plot arrangement of three sunn hemp genotypes (Ubon, Blue Leaf, and ‘Tropic Sun’; main plot) and two biomass managements (removal or leaving the biomass on the field; subplot), distributed in a randomized complete block design. There was a greater biomass accumulation in 2019, but with no differences among genotypes (mean = 4,431 kg DM ha−1). Blue Leaf had greater N concentration than Ubon (23 vs. 19 g kg−1) and greater suppression of the Phytium populations than Ubon and Tropic sun in 2019 (0.9 vs. 2.0 colony forming unit g soil−1). In Experiment 2, the litter bag technique was used to estimate biomass and N decomposition. Treatments were the factorial arrangement of three genotypes and two residue management strategies (incorporated into the soil or placed on the soil surface). Sunn hemp biomass incorporation enhanced organic matter disappearance and N mineralization rate but leaving sunn hemp on the soil surface may result in a steadier N supply for the subsequent crop.
Core Ideas
Sunn hemp genotypes differed in chemical composition.
The genotype Blue Leaf most effectively suppressed Pythium populations in the soil.
Sunn hemp residue management (surface vs. incorporated) affected decomposition.
Genotypes did not differ in residue organic matter and N decomposition.
Integrating two years of bahiagrass (Paspalum notatum Flugge) into the peanut (Arachis hypogea L.) and cotton (Gossypium hirsutum L.) cropping system improves soil quality and crop production as ...compared to a conventional peanut-cotton-cotton rotation (CR). However, it is unclear if this system, known as a sod-based rotation (SBR), affects soil biological communities (e.g., soil microorganisms and nematodes) and their trophic interactions. Furthermore, how soil trophic groups respond to agricultural management (e.g., irrigation) is understudied. In April 2017, we collected pre-planting soil samples (0–30 cm) from cotton plots located in Quincy (Florida, United States) that had been under CR (cotton grown in two consecutive years) and SBR (cotton grown only once) for 17 years. We used amplicon sequencing to investigate soil microbial communities and an inverted microscope technique to quantify nematodes. Compared to CR, SBR significantly increased nematode alpha diversity (one-way ANOVA; P < 0.05) and induced different nematode communities. In contrast, there were no significant differences in the diversity and structure of bacterial communities between SBR and CR. SBR plots were significantly enriched in Nitrospira, while the second of two consecutive years of cotton growth in CR had a higher relative abundance of Alphaproteobacteria (one-way ANOVA; P < 0.05). Plant-parasitic (848 counts per 100 g dry soil) and bacterial-feeding nematodes (798 counts per 100 g dry soil) had a similar abundance in SBR, while plant-parasitic nematodes (7772 counts per 100 g dry soil) were predominant in CR (<1000 counts per 100 g dry soil for all other taxa). SBR exhibited a greater number of significant paired Pearson correlations (P < 0.05) among functional groups of bacteria and nematodes compared to CR systems. Irrigation had no effect on the diversity and structure of bacterial and nematode communities in SBR, although some soil bacterial and nematode groups responded to irrigation. Overall, these results suggest that integrating bahiagrass to diversify the conventional peanut-cotton rotation is a sustainable approach to enhance soil biodiversity, with more diverse nematode communities and complex soil trophic interactions that will affect the response to crops and irrigation. Thus, future crop rotations should increase plant functional trait diversity (e.g., by adding perennial grasses) to maximize benefits to soil communities.
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•Sod-based rotation (SBR) increased the diversity of nematode communities.•Plant-parasitic (PPN) and bacterial feeding nematodes had similar abundance in SBR.•PPN was predominant in the conventional rotation (CR).•There is no significant difference for bacterial communities between SBR and CR.•SBR led to more robust soil food webs by complexifying soil trophic interactions.
ST-segment elevation myocardial infarction (STEMI) is one of the leading causes of fatal cardiovascular diseases, which have been the prime cause of mortality worldwide. Diagnosis in the early phase ...would benefit clinical intervention and prognosis, but the exploration of the biomarkers of STEMI is still lacking.
In this study, we conducted a bioinformatics analysis to identify potential crucial biomarkers in the progress of STEMI.
We obtained GSE59867 for STEMI and stable coronary artery disease (SCAD) patients. Differentially expressed genes (DEGs) were screened with the threshold of |log2fold change| > 0.5 and p <0.05. Based on these genes, we conducted enrichment analysis to explore the potential relevance between genes and to screen hub genes. Subsequently, hub genes were analyzed to detect related miRNAs and DAVID to detect transcription factors for further analysis. Finally, GSE62646 was utilized to assess DEGs specificity, with genes demonstrating AUC results exceeding 75%, indicating their potential as candidate biomarkers.
133 DEGs between SCAD and STEMI were obtained. Then, the PPI network of DEGs was constructed using String and Cytoscape, and further analysis determined hub genes and 6 molecular complexes. Functional enrichment analysis of the DEGs suggests that pathways related to inflammation, metabolism, and immunity play a pivotal role in the progression from SCAD to STEMI. Besides, related-miRNAs were predicted, has-miR-124, has-miR-130a/b, and has-miR-301a/b regulated the expression of the largest number of genes. Meanwhile, Transcription factors analysis indicate that EVI1, AML1, GATA1, and PPARG are the most enriched gene. Finally, ROC curves demonstrate that MS4A3, KLRC4, KLRD1, AQP9, and CD14 exhibit both high sensitivity and specificity in predicting STEMI.
This study revealed that immunity, metabolism, and inflammation are involved in the development of STEMI derived from SCAD, and 6 genes, including MS4A3, KLRC4, KLRD1, AQP9, CD14, and CCR1, could be employed as candidate biomarkers to STEMI.
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