Summary
Overlapping runs of homozygosity (ROH islands) shared by the majority of a population are hypothesized to be the result of selection around a target locus. In this study we investigated the ...impact of selection for coat color within the Noriker horse on autozygosity and ROH patterns. We analyzed overlapping homozygous regions (ROH islands) for gene content in fragments shared by more than 50% of horses. Long‐term assortative mating of chestnut horses and the small effective population size of leopard spotted and tobiano horses resulted in higher mean genome‐wide ROH coverage (SROH) within the range of 237.4–284.2 Mb, whereas for bay, black and roan horses, where rotation mating is commonly applied, lower autozygosity (SROH from 176.4–180.0 Mb) was determined. We identified seven common ROH islands considering all Noriker horses from our dataset. Specific islands were documented for chestnut, leopard spotted, roan and bay horses. The ROH islands contained, among others, genes associated with body size (ZFAT, LASP1 and LCORL/NCAPG), coat color (MC1R in chestnut and the factor PATN1 in leopard spotted horses) and morphogenesis (HOXB cluster in all color strains except leopard spotted horses). This study demonstrates that within a closed population sharing the same founders and ancestors, selection on a single phenotypic trait, in this case coat color, can result in genetic fragmentation affecting levels of autozygosity and distribution of ROH islands and enclosed gene content.
Production of digital terrain model (DTM) is one of the most usual tasks when processing photogrammetric point cloud generated from Unmanned Aerial System (UAS) imagery. The quality of the DTM ...produced in this way depends on different factors: the quality of imagery, image orientation and camera calibration, point cloud filtering, interpolation methods etc. However, the assessment of the real quality of DTM is very important for its further use and applications. In this paper we first describe the main steps of UAS imagery acquisition and processing based on practical test field survey and data. The main focus of this paper is to present the approach to DTM quality assessment and to give a practical example on the test field data. For data processing and DTM quality assessment presented in this paper mainly the in-house developed computer programs have been used. The quality of DTM comprises its accuracy, density, and completeness. Different accuracy measures like RMSE, median, normalized median absolute deviation and their confidence interval, quantiles are computed. The completeness of the DTM is very often overlooked quality parameter, but when DTM is produced from the point cloud this should not be neglected as some areas might be very sparsely covered by points. The original density is presented with density plot or map. The completeness is presented by the map of point density and the map of distances between grid points and terrain points. The results in the test area show great potential of the DTM produced from UAS imagery, in the sense of detailed representation of the terrain as well as good height accuracy.
The influence of irregular blade spacing of car alternator radial fans on the total sound pressure level (SPL) and the noise spectrum has been investigated. For this purpose, theSPLand spectra were ...computed theoretically and the values were compared to measured results for several types of fans with various blade spacing. As theoretical background, the theory describing discrete frequency sound radiated by axial fans in open space was adopted. This was done in order to model theSPLand the spectra of alternator radial fans, placed inside a casing. Furthermore, due to the low blade tip Mach number, blades were modelled as dipole point sources. It was found, in accordance with previous results from known literature, that alterations in blade spacing do not significantly alter the totalSPLnor the cooling capacity of the alternator radial fan. However, significant dispersion of the sound power over several harmonics was found with irregular fan blade spacing, thus allowing for a reduction of the siren effect. This phenomenon was predicted theoretically and confirmed experimentally.
Production of digital terrain model (DTM) is one of the most usual tasks when processing photogrammetric point cloud generated from Unmanned Aerial System (UAS) imagery. The quality of the DTM ...produced in this way depends on different factors: the quality of imagery, image orientation and camera calibration, point cloud filtering, interpolation methods etc. However, the assessment of the real quality of DTM is very important for its further use and applications. In this paper we first describe the main steps of UAS imagery acquisition and processing based on practical test field survey and data. The main focus of this paper is to present the approach to DTM quality assessment and to give a practical example on the test field data. For data processing and DTM quality assessment presented in this paper mainly the in-house developed computer programs have been used. The quality of DTM comprises its accuracy, density, and completeness. Different accuracy measures like RMSE, median, normalized median absolute deviation and their confidence interval, quantiles are computed. The completeness of the DTM is very often overlooked quality parameter, but when DTM is produced from the point cloud this should not be neglected as some areas might be very sparsely covered by points. The original density is presented with density plot or map. The completeness is presented by the map of point density and the map of distances between grid points and terrain points. The results in the test area show great potential of the DTM produced from UAS imagery, in the sense of detailed representation of the terrain as well as good height accuracy.
Slovenian Cold-Blooded horse is an autochthonous horse breed in Slovenia, traditionally reared in the North-Eastern and Northern parts of Slovenia. Today the breed is widespread all over the country. ...Breeding program for the Slovenian Cold-Blooded horse was accepted 2005 when the Association of Slovenian Cold-Blooded Horse Breeders was established, too. The aim of the study was to analyse conformation and gaits traits of the Slovenian Cold-Blooded horse. Likewise, we tried to evaluate fixed effect, affecting the included traits. Data were collected during the classifications of Slovenian Cold-Blooded horse performed from 1996 to 2011. In this study, 1920 horses were included, 52 of which were stallions and 1868 mares. The scoring system included 8 measured and 10 scored traits. Data were analysed by GLM procedure of statistical package SAS/STAT considering sex, age at scoring and birth year as fixed effects. Stallions of Slovenian Cold-Blooded horses were on the average 152.4±0.56 cm high at withers (stick), while mares were 151.22±0.11 cm. Body length (stallions 163.95±1.48 cm; mares 164.28±0.17 cm) was on the average larger than the height at wither thus indicating the rectangular body frame.
LAND SURVEY FROM UNMANED AERIAL VEICHLE Peterman, V.; Mesarič, M.
International archives of the photogrammetry, remote sensing and spatial information sciences.,
07/2012, Letnik:
XXXIX-B1
Journal Article
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In this paper we present, how we use a quadrocopter unmanned aerial vehicle with a camera attached to it, to do low altitude photogrammetric land survey. We use the quadrocopter to take highly ...overlapping photos of the area of interest. A “structure from motion” algorithm is implemented to get parameters of camera orientations and to generate a sparse point cloud representation of objects in photos. Than a patch based multi view stereo algorithm is applied to generate a dense point cloud. Ground control points are used to georeference the data. Further processing is applied to generate digital orthophoto maps, digital surface models, digital terrain models and assess volumes of various types of material. Practical examples of land survey from a UAV are presented in the paper. We explain how we used our system to monitor the reconstruction of commercial building, then how our UAV was used to assess the volume of coal supply for Ljubljana heating plant. Further example shows the usefulness of low altitude photogrammetry for documentation of archaeological excavations. In the final example we present how we used our UAV to prepare an underlay map for natural gas pipeline’s route planning. In the final analysis we conclude that low altitude photogrammetry can help bridge the gap between laser scanning and classic tachymetric survey, since it offers advantages of both techniques.
Castrated male rats were subcutaneously injected testosterone (5 and 10 mg) or a mixture of beta-estradiol and progesterone (1 microg + 2 mg), to determine whether sex steroid hormones (testosterone, ...beta-estradiol, progesterone) might affect the content of sialoglycoproteins, the content and pattern of lipid-bound sialic acid, and the activities of sialyltransferase (SAT) I and SAT II in the Golgi-rich membrane fraction isolated from rat kidney. During four days testosterone did not affect significantly the content of proteins, sialoglycoproteins and total gangliosides, but increased the content of b-series gangliosides from 0.05 +/- 0.006 (untreated animals injected subcutaneously with 0.1 ml DMSO for four days) to 0.16 +/- 0.02 nmol sialic acid (SA) per mg protein (castrated animals injected subcutaneously with 10 mg testosterone/0.1 ml DMSO for four days). This increase was due to the increase in GD3 ganglioside from 0.03 to 0.12 nmol SA/mg protein, and to the decrease of GM3 ganglioside from 0.06 to 0.03 nmol SA/mg protein by testosterone administration. The major ganglioside in the rat kidney was GM3, constituting 63% (control group) and 51% (castrated animals injected daily with 10 mg testosterone) of all gangliosides. Castration itself induced an increase in the rat kidney SAT I and SAT II activities from 712 +/- 130 to 1723 +/- 412 pmol/h x mg protein and from 208 +/- 48 to 751 +/- 176 pmol/h x mg protein, respectively. However, subsequent administration of testosterone, at the highest concentration tested, reversed this effect. In the kidneys of castrated rats, a mixture of beta-estradiol and progesterone decreased SAT II activity from 208 +/- 48 to 87 +/- 33 pmol/h x mg protein.
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