Cells use spatial constraints to control and accelerate the flow of information in enzyme cascades and signalling networks. Synthetic silicon-based circuitry similarly relies on spatial constraints ...to process information. Here, we show that spatial organization can be a similarly powerful design principle for overcoming limitations of speed and modularity in engineered molecular circuits. We create logic gates and signal transmission lines by spatially arranging reactive DNA hairpins on a DNA origami. Signal propagation is demonstrated across transmission lines of different lengths and orientations and logic gates are modularly combined into circuits that establish the universality of our approach. Because reactions preferentially occur between neighbours, identical DNA hairpins can be reused across circuits. Co-localization of circuit elements decreases computation time from hours to minutes compared to circuits with diffusible components. Detailed computational models enable predictive circuit design. We anticipate our approach will motivate using spatial constraints for future molecular control circuit designs.
The terrestrial carbon sink has been large in recent decades, but its size and location remain uncertain. Using forest inventory data and long-term ecosystem carbon studies, we estimate a total ...forest sink of 2.4 ± 0.4 petagrams of carbon per year (Pg C year -1 ) globally for 1990 to 2007. We also estimate a source of 1.3 ± 0.7 Pg C year -1 from tropical land-use change, consisting of a gross tropical deforestation emission of 2.9 ± 0.5 Pg C year -1 partially compensated by a carbon sink in tropical forest regrowth of 1.6 ± 0.5 Pg C year -1 . Together, the fluxes comprise a net global forest sink of 1.1 ± 0.8 Pg C year -1 , with tropical estimates having the largest uncertainties. Our total forest sink estimate is equivalent in magnitude to the terrestrial sink deduced from fossil fuel emissions and land-use change sources minus ocean and atmospheric sinks.
Malaria-eliminating countries achieved remarkable success in reducing their malaria burdens between 2000 and 2010. As a result, the epidemiology of malaria in these settings has become more complex. ...Malaria is increasingly imported, caused by Plasmodium vivax in settings outside sub-Saharan Africa, and clustered in small geographical areas or clustered demographically into subpopulations, which are often predominantly adult men, with shared social, behavioural, and geographical risk characteristics. The shift in the populations most at risk of malaria raises important questions for malaria-eliminating countries, since traditional control interventions are likely to be less effective. Approaches to elimination need to be aligned with these changes through the development and adoption of novel strategies and methods. Knowledge of the changing epidemiological trends of malaria in the eliminating countries will ensure improved targeting of interventions to continue to shrink the malaria map.
Forests are the dominant terrestrial ecosystem on Earth. We review the environmental factors controlling their structure and global distribution and evaluate their current and future trajectory. ...Adaptations of trees to climate and resource gradients, coupled with disturbances and forest dynamics, create complex geographical patterns in forest assemblages and structures. These patterns are increasingly discernible through new satellite and airborne observation systems, improved forest inventories, and global ecosystem models. Forest biomass is a complex property affected by forest distribution, structure, and ecological processes. Since at least 1990, biomass density has consistently increased in global established forests, despite increasing mortality in some regions, suggesting that a global driver such as elevated CO₂ may be enhancing biomass gains. Global forests have also apparently become more dynamic. Advanced information about the structure, distribution, and biomass of the world's forests provides critical ecological insights and opportunities for sustainable forest management and enhancing forest conservation and ecosystem services.
•Marine debris associated with two albatross species has increased since the 1990s.•Debris recovery rates per capita highest in wandering albatross and giant petrels.•Type of marine debris depended ...on species distribution and scavenging behaviour.•For several species, the main source of marine debris appeared to be fishing vessels.•Vessel waste-management practices need to improve to avoid environmental impacts.
Increasing amounts of anthropogenic debris enter the ocean because of mismanagement in coastal communities and, despite a global ban on deliberate dumping, also from vessels, endangering wildlife. Assessing marine plastic pollution directly is challenging, and an alternative is to use seabirds as bioindicators. Our analyses of long time-series (26-years) revealed substantial variation in the amount, characteristics and origin of marine debris (mainly macroplastics and mesoplastics, and excluding fishing gear) associated with seabirds at South Georgia, and, for two species, long-term increases in incidence since 1994. Annual debris recovery rates (items per capita) were 14 × higher in wandering albatrosses Diomedea exulans, and 6 × higher in grey-headed albatrosses Thalassarche chrysostoma and giant petrels Macronectes spp., than in black-browed albatrosses T. melanophris, partly related to differences in egestion (regurgitation), which clears items from the proventriculus. Although some debris types were common in all species, wandering albatrosses and giant petrels ingested higher proportions that were food-related or generic wrapping, gloves, clear or mixed colour, and packaged in South America. This was highly likely to originate from vessels, including the large South American fishing fleets with which they overlap. Debris associated with the two smaller albatrosses was more commonly shorter, rigid (miscellaneous plastic and bottle/tube caps), and packaged in East Asia. Grey-headed albatrosses are exposed to large and increasing amounts of user plastics transported from coastal South America in the Subantarctic Current, or discarded from vessels and circulating in the South Atlantic Gyre, whereas the lower debris ingestion by black-browed albatrosses suggests that plastic pollution in Antarctic waters remains relatively low. Current plastic loads in our study species seem unlikely to have an impact at the population level, but the results nevertheless affirm that marine plastics are a major, trans-boundary animal-welfare and environmental issue that needs to be addressed by much-improved waste-management practices and compliance-monitoring both on land and on vessels in the south Atlantic.
The principle of competitive exclusion postulates that ecologically-similar species are expected to partition their use of resources, leading to niche divergence. The most likely mechanisms allowing ...such coexistence are considered to be segregation in a horizontal, vertical or temporal dimension, or, where these overlap, a difference in trophic niche. Here, by combining information obtained from tracking devices (geolocator-immersion and time depth recorders), stable isotope analyses of blood, and conventional morphometry, we provide a detailed investigation of the ecological mechanisms that explain the coexistence of four species of abundant, zooplanktivorous seabirds in Southern Ocean ecosystems (blue petrel Halobaena caerulea, Antarctic prion Pachyptila desolata, common diving petrel Pelecanoides urinatrix and South Georgian diving petrel P. georgicus). The results revealed a combination of horizontal, vertical and temporal foraging segregation during the breeding season. The stable isotope and morphological analyses reinforced this conclusion, indicating that each species occupied a distinct trophic space, and that this appears to reflect adaptations in terms of flight performance. In conclusion, the present study indicated that although there was a degree of overlap in some measures of foraging behaviour, overall the four taxa operated in very different ecological space despite breeding in close proximity. We therefore provide important insight into the mechanisms allowing these very large populations of ecologically-similar predators to coexist.
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Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Environmental and anthropogenic factors often drive population declines in top predators, but how their influences may combine remains unclear. Albatrosses are particularly threatened. They breed in ...fast-changing environments, and their extensive foraging ranges expose them to incidental mortality (bycatch) in multiple fisheries. The albatross community at South Georgia includes globally important populations of three species that have declined by 40–60%over the last 35 years. We used three steps to deeply understand the drivers of such dramatic changes: (i) describe fundamental demographic rates using multievent models, (ii) determine demographic drivers of population growth using matrix models, and (iii) identify environmental and anthropogenic drivers using ANOVAs. Each species was affected by different processes and threats in their foraging areas during the breeding and nonbreeding seasons. There was evidence for two kinds of combined environmental and anthropogenic effects. The first was sequential; in wandering and black-browed albatrosses, high levels of bycatch have reduced juvenile and adult survival, then increased temperature, reduced sea-ice cover, and stronger winds are affecting the population recovery potential. The second was additive; in gray-headed albatrosses, not only did bycatch impact adult survival but also this impact was exacerbated by lower food availability in years following El Niño events. This emphasizes the need for much improved implementation of mitigation measures in fisheries and better enforcement of compliance. We hope our results not only help focus future management actions for these populations but also demonstrate the power of the modelling approach for assessing impacts of environmental and anthropogenic drivers in wild animal populations.
Technological advances in recent years have seen an explosion of tracking and stable isotope studies of seabirds, often involving repeated measures from the same individuals. This wealth of new ...information has allowed the examination of the extensive variation among and within individuals in foraging and migration strategies (movements, habitat use, feeding behaviour, trophic status, etc.) in unprecedented detail. Variation is underpinned by key life-history or state variables such as sex, age, breeding stage and residual differences among individuals (termed 'individual specialization'). This variation has major implications for our understanding of seabird ecology, because it affects the use of resources, level of intra-specific competition and niche partitioning. In addition, it determines the responses of individuals and populations to the environment and the susceptibility to major anthropogenic threats. Here we review the effects of season (breeding vs. nonbreeding periods), breeding stage, breeding status, age, sex and individual specialization on foraging and migration strategies, as well as the consequences for population dynamics and conservation.
Fisheries bycatch is a major threat to seabird populations, and understanding sex- and age-biases in bycatch rates is important for assessing population-level impacts. We analysed 44 studies to ...provide the first global assessment of seabird bycatch by sex and age, and used generalised models to investigate the effects of region and fishing method. Bycatch was highly biased by sex (65% of 123 samples) and age (92% of 114 samples), with the majority of samples skewed towards males and adults. Bycatch of adults and males was higher in subpolar regions, whereas there was a tendency for more immatures and females to be killed in subtropical waters. Fishing method influenced sex- and age-ratios only in subpolar regions. Sex- and age-biases are therefore common features of seabird bycatch in global fisheries that appear to be associated largely with differences in at-sea distributions. This unbalanced mortality influences the extent to which populations are impacted by fisheries, which is a key consideration for at-risk species. We recommend that researchers track individuals of different sex and age classes to improve knowledge of their distribution, relative overlap with vessels, and hence susceptibility to bycatch. This information should then be incorporated in ecological risk assessments of effects of fisheries on vulnerable species. Additionally, data on sex, age and provenance of bycaught birds should be collected by fisheries observers in order to identify regions and fleets where bycatch is more likely to result in population-level impacts, and to improve targeting of bycatch mitigation and monitoring of compliance.
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•We reviewed 44 studies reporting sex and age composition of seabird bycatch.•Bycatch was highly biased by sex (65% of 123 samples) and age (92% of 114 samples).•Sex- and age-biases in bycatch were mainly related to differential at-sea distributions.•Population impacts of bycatch are exacerbated by sex- and age-biased mortality.•Recording of seabird sex and age should be routine in bycatch observer programs.
The extent to which microorganisms impair wound healing is an ongoing controversy in the management of chronic wounds. Because the high diversity and extreme variability of the microbiota between ...individual chronic wounds lead to inconsistent findings in small cohort studies, evaluation of a large number of chronic wounds using identical sequencing and bioinformatics methods is necessary for clinicians to be able to select appropriate empiric therapies. In this study, we utilized 16S rDNA pyrosequencing to analyze the composition of the bacterial communities present in samples obtained from patients with chronic diabetic foot ulcers (N = 910), venous leg ulcers (N = 916), decubitus ulcers (N = 767), and nonhealing surgical wounds (N = 370). The wound samples contained a high proportion of Staphylococcus and Pseudomonas species in 63 and 25% of all wounds, respectively; however, a high prevalence of anaerobic bacteria and bacteria traditionally considered commensalistic was also observed. Our results suggest that neither patient demographics nor wound type influenced the bacterial composition of the chronic wound microbiome. Collectively, these findings indicate that empiric antibiotic selection need not be based on nor altered for wound type. Furthermore, the results provide a much clearer understanding of chronic wound microbiota in general; clinical application of this new knowledge over time may help in its translation to improved wound healing outcomes.
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