Phytoplankton is a fundamental component of marine food webs and play a crucial role in marine ecosystem functioning. The phenology (timing of growth) of these microscopic algae is an important ...ecological indicator that can be utilized to observe its seasonal dynamics, and assess its response to environmental perturbations. Ocean colour remote sensing is currently the only means of obtaining synoptic estimates of chlorophyll-a (a proxy of phytoplankton biomass) at high temporal and spatial resolution, enabling the calculation of phenology metrics. However, ocean colour observations have acknowledged weaknesses compromising its reliability, while the scarcity of long-term in situ data has impeded the validation of satellite-derived phenology estimates. To address this issue, we compared one of the longest available in situ time series (20 years) of chlorophyll-a concentrations in the Eastern Mediterranean Sea (EMS), along with concurrent remotely-sensed observations. The comparison revealed a marked coherence between the two datasets, indicating the capability of satellite-based measurements in accurately capturing the phytoplankton seasonality and phenology metrics (i.e., timing of initiation, duration, peak and termination) in the studied area. Furthermore, by studying and validating these metrics we constructed a satellite-derived phytoplankton phenology atlas, reporting in detail the seasonal patterns in several sub-regions in coastal and open seas over the EMS. The open waters host higher concentrations from late October to April, with maximum levels recorded during February and lowest during the summer period. The phytoplankton growth over the Northern Aegean Sea appeared to initiate at least a month later than the rest of the EMS (initiating in late November and terminating in late May). The coastal waters and enclosed gulfs (such as Amvrakikos and Maliakos), exhibit a distinct seasonal pattern with consistently higher levels of chlorophyll-a and prolonged growth period compared to the open seas. The proposed phenology atlas represents a useful resource for monitoring phytoplankton growth periods in the EMS, supporting water quality management practices, while enhancing our current comprehension on the relationships between phytoplankton biomass and higher trophic levels (as a food source).
The element carbon plays a central role in climate and life on Earth. It is capable of moving among the geosphere, cryosphere, atmosphere, biosphere and hydrosphere. This flow of carbon is referred ...to as the Earth's carbon cycle. It is also intimately linked to the cycling of other elements and compounds. The ocean plays a fundamental role in Earth's carbon cycle, helping to regulate atmospheric CO2 concentration. The ocean biological carbon pump (OBCP), defined as a set of processes that transfer organic carbon from the surface to the deep ocean, is at the heart of the ocean carbon cycle. Monitoring the OBCP is critical to understanding how the Earth's carbon cycle is changing. At present, satellite remote sensing is the only tool available for viewing the entire surface ocean at high temporal and spatial scales. In this paper, we review methods for monitoring the OBCP with a focus on satellites. We begin by providing an overview of the OBCP, defining and describing the pools of carbon in the ocean, and the processes controlling fluxes of carbon between the pools, from the surface to the deep ocean, and among ocean, land and atmosphere. We then examine how field measurements, from ship and autonomous platforms, complement satellite observations, provide validation points for satellite products and lead to a more complete view of the OBCP than would be possible from satellite observations alone. A thorough analysis is then provided on methods used for monitoring the OBCP from satellite platforms, covering current capabilities, concepts and gaps, and the requirement for uncertainties in satellite products. We finish by discussing the potential for producing a satellite-based carbon budget for the oceans, the advantages of integrating satellite-based observations with ecosystem models and field measurements, and future opportunities in space, all with a view towards bringing satellite observations into the limelight of ocean carbon research.
Display omitted
•Review of techniques for monitoring the ocean biological carbon pump•We focus particularly on satellite techniques•Field measurements, from ships and autonomous platforms, complement satellite data•Integrating satellite-based observations with ecosystems models is beneficial•The future of monitoring the ocean biological carbon pump from space is bright
Phytoplankton community was investigated during two contrasting periods using offshore plankton samples in the volcanic area of Methana peninsula (Saronikos Gulf): the first at early autumn (warm ...period, September 2016) and the second one at early spring (cold period, March 2017). In order to investigate the phytoplankton community structure in the complex geo-biochemical conditions of the area, samples were collected from stations near the CO
2
hydrothermal vents, at the hydrothermal sulfur and radioactive springs and at a fishery nearby Methana town. Three major phytoplankton groups, Bacillariophyceae, Dinophyceae, and Prymnesiophyceae, were studied, using inverted microscopy. In early autumn, Dinophyceae were dominant in the majority of the stations with cell concentrations of
Prorocentrum
spp. up to ~ 35.5 × 10
3
cells l
−1
. In early spring, the dominant class was Bacillariophyceae with dominant genus
Nitzschia
/
Pseudo-nitzschia
presenting cell concentrations up to ~ 33.9 × 10
3
cells l
−1
. Furthermore, Prymnesiophyceae appeared in both spring and autumn samples with small fluctuations. Total phytoplankton cell concentrations followed a seasonal trend, presenting slightly lower values in the hydrothermal-effected area in comparison with the broader Saronikos Gulf, confirming the prevalence of oligotrophic conditions. Seasonal variation was very strong, revealing an association with water temperature and nutrient content. Those environmental variables proved to have a strong effect that was reflected in the phytoplankton community structure.
Alterations in phytoplankton biomass, community structure and timing of their growth (phenology), are directly implicated in the carbon cycle and energy transfer to higher trophic levels of the ...marine food web. Due to the lack of long-term in situ datasets, there is very little information on phytoplankton seasonal succession in Cyprus (eastern Mediterranean Sea). On the other hand, satellite-derived measurements of ocean colour can only provide long-term time series of chlorophyll (an index of phytoplankton biomass) up to the first optical depth (surface waters). The coupling of both means of observations is essential for understanding phytoplankton dynamics and their response to environmental change. Here, we use 23 years of remotely sensed, regionally tuned ocean-colour observations, along with a unique time series of in situ phytoplankton pigment composition data, collected in coastal waters of Cyprus during 2016. The satellite observations show an initiation of phytoplankton growth period in November, a peak in February and termination in April, with an overall mean duration of ~4 months. An in-depth exploration of in situ total Chl-a concentration and phytoplankton pigments revealed that pico- and nano-plankton cells dominated the phytoplankton community. The growth peak in February was dominated by nanophytoplankton and potentially larger diatoms (pigments of 19’ hexanoyloxyfucoxanthin and fucoxanthin, respectively), in the 0–20 m layer. The highest total Chl-a concentration was recorded at a station off Akrotiri peninsula in the south, where strong coastal upwelling has been reported. Another station in the southern part, located next to a fish farm, showed a higher contribution of picophytoplankton during the most oligotrophic period (summer). Our results highlight the importance of using available in situ data coupled to ocean-colour remote sensing, for monitoring marine ecosystems in areas with limited in situ data availability.
Introduction
Marine viruses regulate microbial population dynamics and biogeochemical cycling in the oceans. The ability of viruses to manipulate hosts’ metabolism through the expression of viral ...auxiliary metabolic genes (AMGs) was recently highlighted, having important implications in energy production and flow in various aquatic environments. Up to now, the presence and diversity of viral AMGs is studied using -omics data, and rarely using quantitative measures of viral activity alongside.
Methods
In the present study, four depth layers (5, 50, 75, and 1,000 m) with discrete hydrographic features were sampled in the Eastern Mediterranean Sea; we studied lytic viral community composition and AMG content through metagenomics, and lytic production rates through the viral reduction approach in the ultra-oligotrophic Levantine basin where knowledge regarding viral actions is rather limited.
Results and Discussion
Our results demonstrate depth-dependent patterns in viral diversity and AMG content, related to differences in temperature, nutrients availability, and host bacterial productivity and abundance. Although lytic viral production rates were similar along the water column, the virus-to-bacteria ratio was higher and the particular set of AMGs was more diverse in the bathypelagic (1,000 m) than the shallow epipelagic (5, 50, and 75 m) layers, revealing that the quantitative effect of viruses on their hosts may be the same along the water column through the intervention of different AMGs. In the resource- and energy-limited bathypelagic waters of the Eastern Mediterranean, the detected AMGs could divert hosts’ metabolism toward energy production, through a boost in gluconeogenesis, fatty-acid and glycan biosynthesis and metabolism, and sulfur relay. Near the deep-chlorophyll maximum depth, an exceptionally high percentage of AMGs related to photosynthesis was noticed. Taken together our findings suggest that the roles of viruses in the deep sea might be even more important than previously thought as they seem to orchestrate energy acquisition and microbial community dynamics, and thus, biogeochemical turnover in the oceans.
A natural pH gradient caused by marine CO2 seeps off the Methana peninsula (Saronikos Gulf, eastern Peloponnese peninsula) was used as a natural laboratory to assess potential effects of ocean ...acidification on coccolithophores. Coccolithophore communities were therefore investigated in plankton samples collected during September 2011, September 2016 and March 2017. The recorded cell concentrations were up to ~50 x103 cells/l, with a high Shannon index of up to 2.8, along a pH gradient from 7.61 to 8.18, with values being occasionally <7. Numerous holococcolithophore species represented 60-90% of the surface water assemblages in most samples during September samplings. Emiliania huxleyi was present only in low relative abundances in September samples, but it dominated in March assemblages. Neither malformed nor corroded coccolithophores were documented. Changes in the community structure can possibly be related to increased temperatures, while the overall trend associates low pH values with high cell densities. Our preliminary results indicate that in long-termed acidified, warm and stratified conditions, the study of the total coccolithophore assemblage may prove useful to recognize the intercommunity variability, which favors the increment of lightly calcified species such as holococcolithophores.
Celotno besedilo
Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Coccolithophores are an important component of phytoplankton abundance and biomass in the brackish environments of the Black Sea. Here, the abundance, composition, and distribution of ...coccolithophores were investigated in water samples taken from the first 50 m at 18 stations in the western Black Sea during a coccolithophore bloom, in June 2016. The total cell abundances ranged from 2 to 763 × 104 coccospheres L−1; Emiliania huxleyi was the most dominant species, but also Syracosphaera spp. (S. dilatata and S. molischii), Acanthoica (A. acanthifera and A. quattrospina), and Algirosphaera robusta displayed remarkably high concentrations. The formation of the seasonal thermocline significantly affects the vertical distribution of coccolithophores. Emiliania huxleyi, Syracosphaera spp., and Acanthoica spp. were restricted to the upper part of the water column, whereas high abundances of Algirosphaera robusta occurred below the thermocline. Overall, our results show significant differences in the vertical (ANOSIM R = 0.50, p = 0.0001) and spatial (ANOSIM R = 0.18, p = 0.0006) distribution of coccolithophores. Higher abundances of E. huxleyi and Syracosphaera spp. were recorded in the northwestern inner shelf region when compared to the open-sea samples. The observed coccolithophore spatial distribution is suggested to be mostly associated with the influx of less saline river water with high nutrient concentrations.
An on-board microcosm experiment was performed during the CYCLOPS May 2002 cruise to track the biogeochemical response of Eastern Mediterranean surface seawater to a gradient addition of fresh and ...pre-leached Saharan dust, mimicking the potential fertilization effect as opposed to the impact of adding particles alone. Response parameters examined were P-turnover time, bacterial production and abundance, chlorophyll
a, other phytopigments, abundance of different pico and nanophytoplankton groups, primary production rates, abundance of heterotrophic nanoflagellates and ciliates. The addition of fresh Saharan dust (range: 0.2–
4.9
mg
l
-
1
) and the subsequent nutrient release triggered an increase in phytopigments and primary production, while no response was detected for pre-leached dust particles. Most responses were linearly related to the amount of fresh dust added.
Synechococcus and prymnesiophytes increased in abundance along with cellular pigment content while
Prochlorococcus disappeared, heterotrophic bacteria increased production rates, and ciliates showed a small increase in cell density. A less clear response was recorded by in situ measurements following a Saharan dust storm during a cruise in the Levantine Basin in May 2001. The calculated amount of nutrients and dust particles delivered by such an event to a 15-m thick mixed surface layer is low
(
∼
0.3
nmol
P
l
-
1
,
∼
9
nmol
N
l
-
1
and
0.06
mg
dust
l
-
1
)
, falling close to the lowest dust addition in our microcosm experiment. Even so, an enhancement of phosphate turnover time, a sharp decline of
Prochlorococcus abundance, and slight increases in chlorophyll
a and bacterial activity were observed in response to the dust storm. Considering the linear effect of fresh dust concentrations on the bacterial activity, primary production and pigment concentration (total and per cell), and the likely stimulation of grazing, it is not surprising that changes due to moderate strength dust storms are mostly close to detection limit of either field or remote sensing measurements.
The European Copernicus programme ensures long-term delivery of high-quality, global satellite ocean colour radiometry (OCR) observations from its Sentinel-3 (S3) satellite series carrying the ocean ...and land colour instrument (OLCI). In particular, the S3/OLCI provides marine water leaving reflectance and derived products to the Copernicus marine environment monitoring service, CMEMS, for which data quality is of paramount importance. This is why OCR system vicarious calibration (OC-SVC), which allows uncertainties of these products to stay within required specifications, is crucial. The European organisation for the exploitation of meteorological satellites (EUMETSAT) operates the S3/OLCI marine ground segment, and envisions having an SVC infrastructure deployed and operated for the long-term. This paper describes a design for such an SVC infrastructure, named radiometry for ocean colour satellites calibration and community engagement (ROSACE), which has been submitted to Copernicus by a consortium made of three European research institutions, a National Metrology Institute, and two small- to medium-sized enterprises (SMEs). ROSACE proposes a 2-site infrastructure deployed in the Eastern and Western Mediterranean Seas, capable of delivering up to about 80 high quality matchups per year for OC-SVC of the S3/OLCI missions.
Recent estimates of nutrient budgets for the Eastern Mediterranean Sea (EMS) indicate that atmospheric aerosols play a significant role as suppliers of macro- and micro- nutrients to its Low Nutrient ...Low Chlorophyll water. Here we present the first mesocosm experimental study that examines the overall response of the oligotrophic EMS surface mixed layer (Cretan Sea, May 2012) to two different types of natural aerosol additions, “pure” Saharan dust (SD, 1.6 mg l-1) and mixed aerosols (A - polluted and desert origin, 1 mg l-1). We describe the rationale, the experimental set-up, the chemical characteristics of the ambient water and aerosols and the relative maximal biological impacts that resulted from the added aerosols. The two treatments, run in triplicates (3 m3 each), were compared to control-unamended runs. Leaching of approximately 2.1-2.8 and 2.2-3.7 nmol PO4 and 20-26 and 53-55 nmol NOx was measured per each milligram of SD and A, respectively, representing an addition of approximately 30% of the ambient phosphate concentrations. The nitrate/phosphate ratios added in the A treatment were twice than those added in the SD treatment. Both types of dry aerosols triggered a positive change (25-600% normalized per 1 mg l-1 addition) in most of the rate and state variables that were measured: bacterial abundance (BA), bacterial production (BP), Synechococcus (Syn) abundance, chlorophyll-a (chl-a), primary production (PP) and dinitrogen fixation (N2-fix), with relative changes among them following the sequence BP>PP≈N2-fix>chl-a≈BA≈Syn. Our results show that the ‘polluted’ aerosols triggered a relatively larger biological change compared to the SD amendments (per a similar amount of mass addition), especially regarding BP and PP. We speculate that despite the co-limitation of P and N in the EMS, the additional N released by the A treatment may have triggered the relatively larger response in most of the rate and state variables as compared to SD. An implication of our study is that a warmer atmosphere in the future may increase dust emissions and influence the intensity and length of the already well stratified water column in the EMS and hence the impact of the aerosols as a significant external source of new nutrients.
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