Spatial and temporal patterns in microbial biodiversity across the Amazon river-ocean continuum were investigated along ∼675 km of the lower Amazon River mainstem, in the Tapajós River tributary, and ...in the plume and coastal ocean during low and high river discharge using amplicon sequencing of 16S rRNA genes in whole water and size-fractionated samples (0.2-2.0 μm and >2.0 μm). River communities varied among tributaries, but mainstem communities were spatially homogeneous and tracked seasonal changes in river discharge and co-varying factors. Co-occurrence network analysis identified strongly interconnected river assemblages during high (May) and low (December) discharge periods, and weakly interconnected transitional assemblages in September, suggesting that this system supports two seasonal microbial communities linked to river discharge. In contrast, plume communities showed little seasonal differences and instead varied spatially tracking salinity. However, salinity explained only a small fraction of community variability, and plume communities in blooms of diatom-diazotroph assemblages were strikingly different than those in other high salinity plume samples. This suggests that while salinity physically structures plumes through buoyancy and mixing, the composition of plume-specific communities is controlled by other factors including nutrients, phytoplankton community composition, and dissolved organic matter chemistry. Co-occurrence networks identified interconnected assemblages associated with the highly productive low salinity near-shore region, diatom-diazotroph blooms, and the plume edge region, and weakly interconnected assemblages in high salinity regions. This suggests that the plume supports a transitional community influenced by immigration of ocean bacteria from the plume edge, and by species sorting as these communities adapt to local environmental conditions. Few studies have explored patterns of microbial diversity in tropical rivers and coastal oceans. Comparison of Amazon continuum microbial communities to those from temperate and arctic systems suggest that river discharge and salinity are master variables structuring a range of environmental conditions that control bacterial communities across the river-ocean continuum.
Optical water types (OWTs) were identified from an in situ dataset of concomitant biogeochemical and optical parameters acquired in the Amazon River and its tributaries, in the Lower Amazon region, ...at different hydrological conditions from 2014 to 2017. A seasonal bio-optical characterization was performed. The k-means classification was applied to the in situ normalized reflectance spectra (rn(λ)), allowing the identification of four OWTs. An optical index method was also applied to the rn(λ) defining the thresholds of the OWTs. Next, level-3 Sentinel-3 Ocean and Land Color Instrument images representative of the seasonal discharge conditions were classified using the identified in situ OWTs as reference. The differences between Amazon River and clearwater tributary OWTs were dependent on the hydrological dynamics of the Amazon River, also showing a strong seasonal variability. Each OWT was associated with a specific bio-optical and biogeochemical environment assessed from the corresponding absorption coefficient values of colored dissolved organic matter (aCDOM) and particulate matter (ap), chlorophyll-a and suspended particulate matter (SPM) concentrations, and aCDOM/ap ratio. The rising water season presented a unique OWT with high SPM concentration and high relative contribution of ap to total absorption compared to the other OWTs. This bio-optical characterization of Lower Amazon River waters represents a first step for developing remote sensing inversion models adjusted to the optical complexity of this region.
Outgassing of carbon dioxide (CO2) from rivers and streams to the atmosphere is a major loss term in the coupled terrestrial‐aquatic carbon cycle of major low‐gradient river systems (the term “river ...system” encompasses the rivers and streams of all sizes that compose the drainage network in a river basin). However, the magnitude and controls on this important carbon flux are not well quantified. We measured carbon dioxide flux rates (FCO2), gas transfer velocity (k), and partial pressures (pCO2) in rivers and streams of the Amazon and Mekong river systems in South America and Southeast Asia, respectively. FCO2 and k values were significantly higher in small rivers and streams (channels <100 m wide) than in large rivers (channels >100 m wide). Small rivers and streams also had substantially higher variability in k values than large rivers. Observed FCO2 and k values suggest that previous estimates of basinwide CO2 evasion from tropical rivers and wetlands have been conservative and are likely to be revised upward substantially in the future. Data from the present study combined with data compiled from the literature collectively suggest that the physical control of gas exchange velocities and fluxes in low‐gradient river systems makes a transition from the dominance of wind control at the largest spatial scales (in estuaries and river mainstems) toward increasing importance of water current velocity and depth at progressively smaller channel dimensions upstream. These results highlight the importance of incorporating scale‐appropriate k values into basinwide models of whole ecosystem carbon balance.
Methane (CH₄) fluxes from world rivers are still poorly constrained, with measurements restricted mainly to temperate climates. Additional river flux measurements, including spatio‐temporal studies, ...are important to refine extrapolations. Here we assess the spatio‐temporal variability of CH₄ fluxes from the Amazon and its main tributaries, the Negro, Solimões, Madeira, Tapajós, Xingu, and Pará Rivers, based on direct measurements using floating chambers. Sixteen of 34 sites were measured during low and high water seasons. Significant differences were observed within sites in the same river and among different rivers, types of rivers, and seasons. Ebullition contributed to more than 50% of total emissions for some rivers. Considering only river channels, our data indicate that large rivers in the Amazon Basin release between 0.40 and 0.58 Tg CH₄ yr⁻¹. Thus, our estimates of CH₄ flux from all tropical rivers and rivers globally were, respectively, 19–51% to 31–84% higher than previous estimates, with large rivers of the Amazon accounting for 22–28% of global river CH₄ emissions.
Human activities are drastically altering water and material flows in river systems across Asia. These anthropogenic perturbations have rarely been linked to the carbon (C) fluxes of Asian rivers ...that may account for up to 40–50 % of the global fluxes. This review aims to provide a conceptual framework for assessing the human impacts on Asian river C fluxes, along with an update on anthropogenic alterations of riverine C fluxes. Drawing on case studies conducted in three selected rivers (the Ganges, Mekong, and Yellow River) and other major Asian rivers, the review focuses on the impacts of river impoundment and pollution on CO2 outgassing from the rivers draining South, Southeast, and East Asian regions that account for the largest fraction of river discharge and C exports from Asia and Oceania. A critical examination of major conceptual models of riverine processes against observed trends suggests that to better understand altered metabolisms and C fluxes in “anthropogenic land-water-scapes”, or riverine landscapes modified by human activities, the traditional view of the river continuum should be complemented with concepts addressing spatial and temporal discontinuities created by human activities, such as river impoundment and pollution. Recent booms in dam construction on many large Asian rivers pose a host of environmental problems, including increased retention of sediment and associated C. A small number of studies that measured greenhouse gas (GHG) emissions in dammed Asian rivers have reported contrasting impoundment effects: decreased GHG emissions from eutrophic reservoirs with enhanced primary production vs. increased emissions from the flooded vegetation and soils in the early years following dam construction or from the impounded reaches and downstream estuaries during the monsoon period. These contrasting results suggest that the rates of metabolic processes in the impounded and downstream reaches can vary greatly longitudinally over time as a combined result of diel shifts in the balance between autotrophy and heterotrophy, seasonal fluctuations between dry and monsoon periods, and a long-term change from a leaky post-construction phase to a gradual C sink. The rapid pace of urbanization across southern and eastern Asian regions has dramatically increased municipal water withdrawal, generating annually 120 km3 of wastewater in 24 countries, which comprises 39 % of the global municipal wastewater production. Although municipal wastewater constitutes only 1 % of the renewable surface water, it can disproportionately affect the receiving river water, particularly downstream of rapidly expanding metropolitan areas, resulting in eutrophication, increases in the amount and lability of organic C, and pulse emissions of CO2 and other GHGs. In rivers draining highly populated metropolitan areas, lower reaches and tributaries, which are often plagued by frequent algal blooms and pulsatile CO2 emissions from urban tributaries delivering high loads of wastewater, tended to exhibit higher levels of organic C and the partial pressure of CO2 (pCO2) than less impacted upstream reaches and eutrophic impounded reaches. More field measurements of pCO2, together with accurate flux calculations based on river-specific model parameters, are required to provide more accurate estimates of GHG emissions from the Asian rivers that are now underrepresented in the global C budgets. The new conceptual framework incorporating discontinuities created by impoundment and pollution into the river continuum needs to be tested with more field measurements of riverine metabolisms and CO2 dynamics across variously affected reaches to better constrain altered fluxes of organic C and CO2 resulting from changes in the balance between autotrophy and heterotrophy in increasingly human-modified river systems across Asia and other continents.
We analyzed the molecular composition of dissolved organic matter (DOM) in the lower Amazon River (ca. 850 km from Óbidos to the mouth) using ultrahigh-resolution mass spectrometry and geochemical ...tracers. Changes in DOM composition along this lower reach suggest a transition from higher plant-derived DOM to more algal/microbial-derived DOM. This result was likely due to a combination of autochthonous production, alteration of terrigenous DOM as it transits down the river, and increased algal inputs from floodplain lakes and clearwater tributaries during high discharge conditions. Spatial gradients in dissolved organic carbon (DOC) concentrations varied with discharge. Maximal DOC concentrations were observed near the mouth during high water, highlighting the importance of lateral inputs of DOM along the lower river. The majority of DOM molecular formulae did not change within the time it takes the water in the mainstem to be transported through the lower reach. This is indicative of molecules representing a mixture of compounds that are resistant to rapid alteration and reactive compounds that are continuously replenished by the lateral input of terrestrial organic matter from the landscape, tributaries, and floodplains. River water incubations revealed that photo- and bio-transformation alter at most 30% of the DOM molecular formulae. River discharge at the mouth differed from the sum of discharge measurements made at Óbidos and the main gauged tributaries in the lower Amazon. This indicates that changes in hydrology and associated variations in the source waters along the lower reach affected the molecular composition of the DOM that is being transported from the Amazon River to the coastal ocean.
The balance between the storage of vascular plant carbon in soils, oxidation to carbon dioxide, and export via rivers affects calculations of the strength of terrestrial ecosystems as carbon sinks. ...The magnitude and timescale of the riverine export pathway are not well constrained. Here we use radiocarbon dating of lignin phenols to show that plant‐derived carbon carried by suspended sediment of the Mekong River is very young, having been produced within the last 18 years. Further, this plant‐derived carbon remains young during times of the year when bulk carbon varies from modern to over 3000 radiocarbon years old. Our results demonstrate that primary‐production derivatives are exported rapidly and suggest that the age of riverine lignin is similar to estimates of the residence time of terrestrial organic carbon in tropical catchments. These results are relevant for modeling predictions of the influence of the terrestrial biosphere on atmospheric carbon dioxide levels.
Key Points
Age of riverine carbon varies seasonally by thousands of years
Age of lignin indicates rapid export of terrestrial production by rivers
Lignin is youngest component of carbon found in rivers
The flux of methane (CH₄) from inland waters to the atmosphere has a profound impact on global atmospheric greenhouse gas (GHG) levels, and yet, strikingly little is known about the dynamics ...controlling sources and sinks of CH₄ in the aquatic setting. Here, we examine the cycling and flux of CH₄ in six large rivers in the Amazon basin, including the Amazon River. Based on stable isotopic mass balances of CH₄, inputs and outputs to the water column were estimated. We determined that ecosystem methane oxidation (MOX) reduced the diffusive flux of CH₄ by approximately 28–96% and varied depending on hydrologic regime and general geochemical characteristics of tributaries of the Amazon River. For example, the relative amount of MOX was maximal during high water in black and white water rivers and minimal in clear water rivers during low water. The abundance of genetic markers for methane‐oxidizing bacteria (pmoA) was positively correlated with enhanced signals of oxidation, providing independent support for the detected MOX patterns. The results indicate that MOX in large Amazonian rivers can consume from 0.45 to 2.07 Tg CH₄ yr⁻¹, representing up to 7% of the estimated global soil sink. Nevertheless, climate change and changes in hydrology, for example, due to construction of dams, can alter this balance, influencing CH₄ emissions to atmosphere.
Results from two regional surveys and multi-lake seasonal studies were used to investigate the variability of phytoplankton photosynthesis and planktonic community respiration in central Amazon ...floodplain lakes. Hypothesized effects of optical and chemical variables on planktonic photosynthesis and respiration were examined statistically. Changes in dissolved oxygen in light and dark bottles distributed along light-gradients in a shipboard incubator or in situ were used to calculate volumetric community respiration (
R
c
), volumetric gross photosynthesis (
P
), daily integral gross photosynthesis (Π), and daily integral community respiration rates (Λ). Π varied significantly among all lakes with source-water river stage and source-water river type. Λ also varied significantly with source-water river stage. Variation in maximum depth linked to source-water river stage was a key factor controlling seasonal variations in Π through its influence on total suspended solids and total phosphorus concentrations which affected light extinction and light-saturated photosynthesis, respectively. The predominance of sub-saturated dissolved O
2
in the pelagic surface waters of Amazon floodplain lakes was attributed to high integral
R
c
:
P
ratios, indicating the existence of large sustained inputs of non-phytoplankton organic carbon to these environments.
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