Explaining the large-scale diversity of soil organisms that drive biogeochemical processes-and their responses to environmental change-is critical. However, identifying consistent drivers of ...belowground diversity and abundance for some soil organisms at large spatial scales remains problematic. Here we investigate a major guild, the ectomycorrhizal fungi, across European forests at a spatial scale and resolution that is-to our knowledge-unprecedented, to explore key biotic and abiotic predictors of ectomycorrhizal diversity and to identify dominant responses and thresholds for change across complex environmental gradients. We show the effect of 38 host, environment, climate and geographical variables on ectomycorrhizal diversity, and define thresholds of community change for key variables. We quantify host specificity and reveal plasticity in functional traits involved in soil foraging across gradients. We conclude that environmental and host factors explain most of the variation in ectomycorrhizal diversity, that the environmental thresholds used as major ecosystem assessment tools need adjustment and that the importance of belowground specificity and plasticity has previously been underappreciated.
Ectomycorrhizal fungi are major ecological players in temperate forests, but they are rarely used in measures of forest condition because large‐scale, high‐resolution, standardized and replicated ...belowground data are scarce. We carried out an analysis of ectomycorrhizas at 22 intensively monitored long‐term oak plots, across nine European countries, covering complex natural and anthropogenic environmental gradients. We found that at large scales, mycorrhizal richness and evenness declined with decreasing soil pH and root density, and with increasing atmospheric nitrogen deposition. Shifts in mycorrhizas with different functional traits were detected; mycorrhizas with structures specialized for long‐distance transport related differently to most environmental variables than those without. The dominant oak‐specialist Lactarius quietus, with limited soil exploration abilities, responds positively to increasing nitrogen inputs and decreasing pH. In contrast, Tricholoma, Cortinarius and Piloderma species, with medium‐distance soil exploration abilities, show a consistently negative response. We also determined nitrogen critical loads for moderate (9.5–13.5 kg N/ha/year) and drastic (17 kg N/ha/year) changes in belowground mycorrhizal root communities in temperate oak forests. Overall, we generated the first baseline data for ectomycorrhizal fungi in the oak forests sampled, identified nitrogen pollution as one of their major drivers at large scales and revealed fungi that individually and/or in combination with others can be used as belowground indicators of environmental characteristics.
•We studied the effects of liming on the forest ground flora over 25 years.•Indicator values of nutrient supply increased on limed plots ten years after liming.•Soil reaction indicator values rose on ...limed spruce plots ten years upon liming.•Changes in indicator values were only transient.•No significant invasion of open-land forb or grass species into limed plots.
Upon the occurrence of acidic deposition-driven damage to forests at the beginning of the 1980s, large-scale liming has been applied to acidic forest sites in Germany. Due to possible negative consequences on soil chemistry and on (soil) fauna and flora, this measure was discussed highly controversially right from the beginning and is disputed until today. In investigations of liming effects on the forest understory vegetation, very few studies covered a time period of more than two decades with intermittent relevés. We analyzed relevés of the herbal understory on limed and control plots in one pine (Pinus sylvestris), one oak (Quercus robur), two European beech (Fagus sylvatica) and five Norway spruce (Picea abies) stands at permanent observation sites in south-western Germany. These relevés had been repeatedly conducted during approximately 25 years.
The number of herbal plant species was generally low. An increase in the herb layer's plant cover with time was found at six out of the nine study sites and was mainly due to spreading of two grass species (Milium effusum, Deschampsia flexuosa) and of the subshrub Vaccinium myrtillus, which might have benefitted from continuous nitrogen deposition. Only two species (Agrostis stolonifera, Stellaria media) with a main distribution in open landscapes were found in the years of investigation and their occurrence was restricted to only four sites and some few years.
Across all sites, the average Ellenberg indicator values of nutrient (nitrogen) supply (N-values) were significantly increased on the limed plots ten years after liming, and at Year 10, the N-values of the limed plots were significantly higher than that of the control, presumably due to increased decomposition rates after liming. At the spruce sites, the average Ellenberg indicator values of soil reaction (R-values) of the limed plots 10 years after liming were significantly higher than at the beginning (Year 0) and at the end of the investigation (2013). We found no significant differences among the Ellenberg indicator values of light condition (L-values).
In conclusion, liming had a significant, but only transient effect on the composition of the understory species. Therefore, our results do not support arguments against liming of acidic forests that are based on long-term changes in the herbal flora. In managed forests for wood production on acidic soils, liming can continue contributing to buffer the soils against ongoing acidification and accompanying cation leaching caused by anthropogenic deposition of nitrogen.
Change history: In the HTML version of this Article, author 'Filipa Cox' had no affiliation in the author list, although she was correctly associated with affiliation 3 in the PDF. In addition, the ...blue circles for 'oak' were missing from Extended Data Fig. 1. These errors have been corrected online.
We have isolated the gene for human type I keratin 9 (KRT9) and localised it to chromosome 17q21. Patients with epidermolytic palmoplantar keratoderma (EPPK), an autosomal dominant skin disease, were ...investigated. Three KRT9 mutations, N160K, R162Q, and R162W, were identified. All the mutations are in the highly conserved coil 1A of the rod domain, thought to be important for heterodimerisation. R162W was detected in five unrelated families and affects the corresponding residue in the keratin 14 and keratin 10 genes that is also altered in cases of epidermolysis bullosa simplex and generalised epidermolytic hyperkeratosis, respectively. These findings provide further evidence that mutations in keratin genes may cause epidermolysis and hyperkeratosis and that hyperkeratosis of palms and soles may be caused by different mutations in the KRT9 gene.