The beta diversity of communities along gradients has fascinated ecologists for decades. Traditionally such studies have focused on the species composition of communities, but researchers are ...becoming increasingly interested in analyzing the phylogenetic composition in the hope of achieving mechanistic insights into community structure. To date many metrics of phylogenetic beta diversity have been published, but few empirical studies have been published. Further inferences made from such phylogenetic studies critically rely on the pattern of trait evolution. The present work provides a study of the phylogenetic dissimilarity of 96 tree communities in India. The work compares and contrasts eight metrics of phylogenetic dissimilarity, considers the role of phylogenetic signal in trait data and shows that environmental distance rather than spatial distance is the best correlate of phylogenetic dissimilarity in the study system.
Celotno besedilo
Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Tropical tree communities present one of the most challenging systems for studying the processes underlying community assembly. Most community assembly hypotheses consider the relative importance of ...the ecological similarity of co-occurring species. Quantifying this similarity is a daunting and potentially impossible task in species-rich assemblages. During the past decade tropical tree ecologists have increasingly utilized phylogenetic trees and functional traits to estimate the ecological similarity of species in order to test mechanistic community assembly hypotheses. A large amount of work has resulted with many important advances having been made along the way. That said, there are still many outstanding challenges facing those utilizing phylogenetic and functional trait approaches to study community assembly. Here I review the conceptual background, major advances and major remaining challenges in phylogenetic- and trait-based approaches to community ecology with a specific focus on tropical trees. I argue that both approaches tremendously improve our understanding of tropical tree community ecology, but neither approach has fully reached its potential thus far.
Foundational to trait-based community ecology is the expectation that functional traits determine demographic outcomes. However, trait–demographic rate relationships are frequently weak, particularly ...in tree communities. The foundation of trait-based tree community ecology may, therefore, appear to be unstable. Here we argue that there are three core reasons why trait–demographic relationships are generally weak in tree communities. Specifically, important contextual information is frequently ignored, there is too much focus on species relative to individuals, and there are dimensions of tree function that are critical for determining tree demographic rates that are not captured by easily measured functional traits. Rather than being evidence that trait-based community ecology is fundamentally flawed, these issues elucidate a pathway towards a more robust research program.
Functional trait–demographic rate relationships are assumed and form the foundation of trait-based community ecology.
Evidence from tree communities consistently shows weak or nonexistent trait–demographic rate relationships.
We argue that these weak relationships arise from three fundamental problems with trait-based community ecology as it is currently implemented.
Rather than them being fatal flaws, confronting these three problems will provide a pathway towards a more rigorous trait-based community ecology.
Conservation biologists and community ecologists have increasingly begun to quantify the phylogenetic diversity and phylogenetic dispersion in species assemblages. In some instances, the phylogenetic ...trees used for such analyses are fully bifurcating, but in many cases the phylogenies being used contain unresolved nodes (i.e. polytomies). The lack of phylogenetic resolution in such studies, while certainly not preferred, is likely to continue particularly for those analyzing diverse communities and datasets with hundreds to thousands of taxa. Thus it is imperative that we quantify potential biases and losses of statistical power in studies that use phylogenetic trees that are not completely resolved. The present study is designed to meet both of these goals by quantifying the phylogenetic diversity and dispersion of simulated communities using resolved and gradually 'unresolved' phylogenies. The results show that: (i) measures of community phylogenetic diversity and dispersion are generally more sensitive to loss of resolution basally in the phylogeny and less sensitive to loss of resolution terminally; and (ii) the loss of phylogenetic resolution generally causes false negative results rather than false positives.
Celotno besedilo
Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Patterns of biodiversity are ultimately the product of speciation and extinction. Speciation serves as the biodiversity pump while extinction serves as the agent that culls global to local levels of ...biodiversity. Linking these central processes to global and local patterns of biodiversity is a key challenge in both ecology and evolution. This challenge necessarily requires a simultaneous consideration of the species, phylogenetic, and functional diversity across space and the tree of life. In this review, I outline a research framework for biodiversity science that considers the evolutionary and ecological processes that generate and cull levels of biodiversity and that influence the inter-relationships between species, phylogenetic, and functional diversity. I argue that a biodiversity synthesis must begin with a consideration of the inherently ecological process of speciation and end with how global biodiversity is filtered into local-scale plant communities. The review ends with a brief outlook on future challenges for those studying biodiversity, including outstanding hypotheses that need testing and key data limitations.
Continental‐scale maps of plant functional diversity are a fundamental piece of data of interest to ecosystem modelers and ecologists, yet such maps have been exceedingly hard to generate. The large ...effort to compile global plant functional trait databases largely for the purpose of mapping and analyzing the spatial distribution of function has resulted in very sparse data matrices thereby limiting progress. Identifying robust methodologies to gap fill or impute trait values in these databases is an important objective. Here I argue that existing statistical tools from phylogenetic comparative methods can be used to rapidly impute values into global plant functional trait databases due to the large amount of phylogenetic signal often in trait data. In particular, statistical models of phylogenetic signal in traits can be generated from existing data and used to predict missing values of closely related species often with a high degree of accuracy thereby facilitating the continental‐scale mapping of plant function. Despite the promise of this approach, I also discuss potential pitfalls and future challenges that will need to be addressed.
The mechanisms underlying interspecific variation in conspecific negative density dependence (CNDD) are poorly understood. Using a multilevel modeling approach, we combined long-term seedling ...demographic data from a subtropical forest plot with soil fungal community data by means of DNA sequencing to address the feedback of various guilds of soil fungi on the density dependence of trees. We show that mycorrhizal type mediates tree neighborhood interactions at the community level, and much of the interspecific variation in CNDD is explained by how tree species differ in their fungal density accumulation rates as they grow. Species with higher accumulation rates of pathogenic fungi suffered more from CNDD, whereas species with lower CNDD had higher accumulation rates of ectomycorrhizal fungi, suggesting that mutualistic and pathogenic fungi play important but opposing roles.
Species diversity is promoted and maintained by ecological and evolutionary processes operating on species attributes through space and time. The degree to which variability in species function ...regulates distribution and promotes coexistence of species has been debated. Previous work has attempted to quantify the relative importance of species function by using phylogenetic relatedness as a proxy for functional similarity. The key assumption of this approach is that function is phylogenetically conserved. If this assumption is supported, then the phylogenetic dispersion in a community should mirror the functional dispersion. Here we quantify functional trait dispersion along several key axes of tree life-history variation and on multiple spatial scales in a Neotropical dry-forest community. We next compare these results to previously reported patterns of phylogenetic dispersion in this same forest. We find that, at small spatial scales, coexisting species are typically more functionally clustered than expected, but traits related to adult and regeneration niches are overdispersed. This outcome was repeated when the analyses were stratified by size class. Some of the trait dispersion results stand in contrast to the previously reported phylogenetic dispersion results. In order to address this inconsistency we examined the strength of phylogenetic signal in traits at different depths in the phylogeny. We argue that: (1) while phylogenetic relatedness may be a good general multivariate proxy for ecological similarity, it may have a reduced capacity to depict the functional mechanisms behind species coexistence when coexisting species simultaneously converge and diverge in function; and (2) the previously used metric of phylogenetic signal provided erroneous inferences about trait dispersion when married with patterns of phylogenetic dispersion.
Wood performs several essential functions in plants, including mechanically supporting aboveground tissue, storing water and other resources, and transporting sap. Woody tissues are likely to face ...physiological, structural and defensive trade-offs. How a plant optimizes among these competing functions can have major ecological implications, which have been under-appreciated by ecologists compared to the focus they have given to leaf function. To draw together our current understanding of wood function, we identify and collate data on the major wood functional traits, including the largest wood density database to date (8412 taxa), mechanical strength measures and anatomical features, as well as clade-specific features such as secondary chemistry. We then show how wood traits are related to one another, highlighting functional trade-offs, and to ecological and demographic plant features (growth form, growth rate, latitude, ecological setting). We suggest that, similar to the manifold that tree species leaf traits cluster around the 'leaf economics spectrum', a similar 'wood economics spectrum' may be defined. We then discuss the biogeography, evolution and biogeochemistry of the spectrum, and conclude by pointing out the major gaps in our current knowledge of wood functional traits.
Spatial variation in filters imposed by the abiotic environment causes variation in functional traits within and among plant species. This is abundantly clear for plant species along elevational ...gradients, where parallel abiotic selection pressures give rise to predictable variation in leaf phenotypes among ecosystems. Understanding the factors responsible for such patterns may provide insight into the current and future drivers of biodiversity, local community structure and ecosystem function. In order to explore patterns in trait variation along elevational gradients, we conducted a meta‐analysis of published observational studies that measured three key leaf functional traits that are associated with axes of variation in both resource competition and stress tolerance: leaf mass:area ratio (LMA), leaf nitrogen content per unit mass (Nₘₐₛₛ) and N content per unit area (Nₐᵣₑₐ). To examine whether there may be evidence for a genetic basis underlying the trait variation, we conducted a review of published results from common garden experiments that measured the same leaf traits. Within studies, LMA and Nₐᵣₑₐ tended to decrease with mean annual temperature (MAT) along elevational gradients, while Nₘₐₛₛ did not vary systematically with MAT. Correlations among pairs of traits varied significantly with MAT: LMA was most strongly correlated with Nₘₐₛₛ and Nₐᵣₑₐ at high‐elevation sites with relatively lower MAT. The strengths of the relationships were equal or greater within species relative to the relationships among species, suggesting parallel evolutionary dynamics along elevational gradients among disparate biomes. Evidence from common garden studies further suggests that there is an underlying genetic basis to the functional trait variation that we documented along elevational gradients. Taken together, these results indicate that environmental filtering both selects locally adapted genotypes within plant species and constrains species to elevational ranges based on their ranges of potential leaf trait values. If individual phenotypes are filtered from populations in the same way that species are filtered from regional species pools, changing climate may affect both the species and functional trait composition of plant communities.
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