The Dark Energy Survey Data Release 2 Abbott, T. M. C.; Amon, A.; Avila, S. ...
The Astrophysical journal. Supplement series,
08/2021, Letnik:
255, Številka:
2
Journal Article
Recenzirano
Odprti dostop
Abstract
We present the second public data release of the Dark Energy Survey, DES DR2, based on optical/near-infrared imaging by the Dark Energy Camera mounted on the 4 m Blanco telescope at Cerro ...Tololo Inter-American Observatory in Chile. DES DR2 consists of reduced single-epoch and coadded images, a source catalog derived from coadded images, and associated data products assembled from 6 yr of DES science operations. This release includes data from the DES wide-area survey covering ∼5000 deg
2
of the southern Galactic cap in five broad photometric bands,
grizY
. DES DR2 has a median delivered point-spread function FWHM of
g
= 1.11″,
r
= 0.95″,
i
= 0.88″,
z
= 0.83″, and
Y
= 0.″90, photometric uniformity with a standard deviation of < 3 mmag with respect to Gaia DR2
G
band, a photometric accuracy of ∼11 mmag, and a median internal astrometric precision of ∼27 mas. The median coadded catalog depth for a 1.″95 diameter aperture at signal-to-noise ratio = 10 is
g
= 24.7,
r
= 24.4,
i
= 23.8,
z
= 23.1, and
Y
= 21.7 mag. DES DR2 includes ∼691 million distinct astronomical objects detected in 10,169 coadded image tiles of size 0.534 deg
2
produced from 76,217 single-epoch images. After a basic quality selection, benchmark galaxy and stellar samples contain 543 million and 145 million objects, respectively. These data are accessible through several interfaces, including interactive image visualization tools, web-based query clients, image cutout servers, and Jupyter notebooks. DES DR2 constitutes the largest photometric data set to date at the achieved depth and photometric precision.
RESUMO As plantas medicinais representam um dos principais recursos terapêuticos utilizado pelo homem para a cura e prevenção de doenças, no entanto, para que o tratamento seja seguro e eficaz é ...necessário conhecer seus componentes químicos. Dessa forma, o intuito deste trabalho foi determinar os parâmetros farmacognosticos para o estabelecimento do controle de qualidade da droga vegetal composta pelas folhas de Erythroxylum suberosum A. St.-Hil., pertencentes à família Erythroxylaceae ocorrente no Cerrado. Para tanto, foram coletadas folhas adultas nas proximidades da Universidade Federal de Goiás, Goiânia-GO. Foram determinados o teor de umidade por meio de balança com irradiação de raios infravermelho e o teor de cinzas totais. Na prospecção fitoquímica foram pesquisadas as classes de metabólitos secundários e realizou-se o doseamento de fenóis totais, flavonoides e taninos totais. Os resultados dos testes de pureza realizados, teor de umidade e teor de cinzas totais, estão de acordo com os limites estabelecidos pelas especificações farmacopeicas. As análises fitoquímicas evidenciaram a presença de flavonoides, taninos, cumarinas, saponinas e resinas. No doseamento de fenóis totais, taninos e flavonoides presentes nas folhas de E. suberosum A. St.-Hil. obteve-se respectivamente 17,97%, 6,31%, 3,87%. Estes resultados confirmam os dados da literatura quanto à presença destes compostos em Erythroxylaceae, pois de acordo com nas folhas de E. tortuosum obteve-se valores de 10%, 8,4% e 0,064% de Fenóis, Taninos e flavonoides, respectivamente e nas folhas de E. deciduum foram encontrados 12,04% de fenóis totais, 0,87% de taninos e 1,37% de flavonoides. Os resultados encontrados no presente trabalho também se tornam relevantes quando comparadas as quantidades desses metabólitos com espécies clássicas na biossíntese de compostos fenólicos como o teor de taninos de Stryphnodendron adstringens (Mart.) Coville e em Eugenia uniflora L. foi de 29,9% e 2,96%, respectivamente. Teores de flavonóides que variaram entre 0,65% a 0,79% na Calendula officinalis L. e Ginkgo bilobaL. 0,59%, 0,75% e 0,79%. Sendo assim, a quantidade considerável de compostos fenólicos obtida em E. suberosum A. St.-Hil. sugere que a espécie possua um importante potencial terapêutico e quem sabe potencial antioxidante, a ser explorado em estudos posteriores.
We present a novel approach for creating science-ready catalogs through a software infrastructure developed for the Dark Energy Survey (DES). We integrate the data products released by the DES Data ...Management and additional products created by the DES collaboration in an environment known as DES Science Portal. Each step involved in the creation of a science-ready catalog is recorded in a relational database and can be recovered at any time. We describe how the DES Science Portal automates the creation and characterization of lightweight catalogs for DES Year 1 Annual Release, and show its flexibility in creating multiple catalogs with different inputs and configurations. Finally, we discuss the advantages of this infrastructure for large surveys such as DES and the Large Synoptic Survey Telescope. The capability of creating science-ready catalogs efficiently and with full control of the inputs and configurations used is an important asset for supporting science analysis using data from large astronomical surveys.
Coiled coils are widespread protein motifs in nature, and promising building blocks for bio-inspired nanomaterials and nanoscale force sensors. Detailed structural insight into their mechanical ...response is required to understand their role in tissues and to design building blocks for applications. We use all-atom molecular dynamics simulations to elucidate the mechanical response of two types of coiled coils under shear: dimers and trimers. The amino acid sequences of both systems are similar, thus enabling universal (vs. system-specific) features to be identified. The trimer is mechanically more stable - it is both stronger and tougher - than the dimer, withstanding higher forces (127 pN vs. 49 pN at v = 10-3 nm ns-1) and dissipating up to five times more energy before rupture. The deformation mechanism of the trimer at all pull speeds is dominated by progressive helix unfolding. In contrast, at the lowest pull speeds, dimers deform by unfolding/refolding-assisted sliding. The additional helix in the trimer thus both determines the stability of the structure and affects the deformation mechanism, preventing helix sliding. The mechanical response of the coiled coils is not only sensitive to the oligomerization state but also to helix stability: preventing helix unfolding doubles the mechanical strength of the trimer, but decreases its toughness to half. Our results show that coiled coil trimers expand the range of coiled coil responses to an applied shear force. Altering the stability of individual helices against deformation emerges as one possible route towards fine-tuning this response, enabling the use of these motifs as nanomechanical building blocks.
Coiled coils (CCs) are key building blocks of biogenic materials and determine their mechanical response to large deformations. Of particular interest is the observation that CC‐based materials ...display a force‐induced transition from α‐helices to mechanically stronger β‐sheets (αβT). Steered molecular dynamics simulations predict that this αβT requires a minimum, pulling speed‐dependent CC length. Here, de novo designed CCs with a length between four to seven heptads are utilized to probe if the transition found in natural CCs can be mimicked with synthetic sequences. Using single‐molecule force spectroscopy and molecular dynamics simulations, these CCs are mechanically loaded in shear geometry and their rupture forces and structural responses to the applied load are determined. Simulations at the highest pulling speed (0.01 nm ns−1) show the appearance of β‐sheet structures for the five‐ and six‐heptad CCs and a concomitant increase in mechanical strength. The αβT is less probable at a lower pulling speed of 0.001 nm ns−1 and is not observed in force spectroscopy experiments. For CCs loaded in shear geometry, the formation of β‐sheets competes with interchain sliding. β‐sheet formation is only possible in higher‐order CC assemblies or in tensile‐loading geometries where chain sliding and dissociation are prohibited.
Coiled coils are key building blocks of self‐assembled biogenic materials. Under load, coiled coils frequently undergo a structural transition from an α‐helical structure to mechanically stronger β‐sheets. This α‐β transition is absent when shearing individual synthetic coiled coils with single‐molecule force spectroscopy. Molecular dynamics simulations suggest that interchain sliding dominates over β‐sheet formation on the chain separation pathway.
Coiled coils are important nanomechanical building blocks in biological and biomimetic materials. A mechanistic molecular understanding of their structural response to mechanical load is essential ...for elucidating their role in tissues and for utilizing and tuning these building blocks in materials applications. Using a combination of single-molecule force spectroscopy (SMFS) and steered molecular dynamics (SMD) simulations, we have investigated the mechanics of synthetic heterodimeric coiled coils of different length (3-4 heptads) when loaded in shear geometry. Upon shearing, we observe an initial rise in the force, which is followed by a constant force plateau and ultimately strand separation. The force required for strand separation depends on the coiled coil length and the applied loading rate, suggesting that coiled coil shearing occurs out of equilibrium. This out-of-equilibrium behaviour is determined by a complex structural response which involves helix uncoiling, uncoiling-assisted sliding of the helices relative to each other in the direction of the applied force as well as uncoiling-assisted dissociation perpendicular to the force axis. These processes follow a hierarchy of timescales with helix uncoiling being faster than sliding and sliding being faster than dissociation. In SMFS experiments, strand separation is dominated by uncoiling-assisted dissociation and occurs at forces between 25-45 pN for the shortest 3-heptad coiled coil and between 35-50 pN for the longest 4-heptad coiled coil. These values are highly similar to the forces required for shearing apart short double-stranded DNA oligonucleotides, reinforcing the potential role of coiled coils as nanomechanical building blocks in applications where protein-based structures are desired.
We use classical atomistic molecular dynamics simulations of two water models (SPC/E and TIP4P/2005) to investigate the orientation and reorientation dynamics of two subpopulations of OH groups ...belonging to water molecules at the air/water interface at 300 K: those OH groups that donate a hydrogen bond (called “bonded”) and those that do not (called “free”). Free interfacial OH groups reorient in two distinct regimes: a fast regime from 0 to 1 ps and a slow regime thereafter. Qualitatively similar behavior was reported by others for free OH groups near extended hydrophobic surfaces. In contrast, the net reorientation of bonded OH groups occurs at a rate similar to that of bulk water. This similarity in reorientation rate results from compensation of two effects: decreasing frequency of hydrogen-bond breaking/formation (i.e., hydrogen-bond exchange) and faster rotation of intact hydrogen bonds. Both changes result from the decrease in density at the air/water interface relative to the bulk. Interestingly, because of the presence of capillary waves, the slowdown of hydrogen-bond exchange is significantly smaller than that reported for water near extended hydrophobic surfaces, but it is almost identical to that reported for water near small hydrophobic solutes. In this sense water at the air/water interface has characteristics of water of hydration of both small and extended hydrophobic solutes.
Studies have previously shown that anthracene and naphthalene derivatives serve as compounds for trapping and chemically generating singlet molecular oxygen O2(1Δg), respectively. Simple and ...efficient synthetic routes to anthracene and naphthalene derivatives are needed, for improved capture and release of O2(1Δg) in cellular environments. Because of this need, we have synthesized a dihydroxypropyl amide naphthlene endoperoxide as a O2(1Δg) donor, as well as five anthracene derivatives as O2(1Δg) acceptor. The anthracene derivatives bear dihydroxypropyl amide, ester, and sulfonate ion end groups connected to 9,10-positions by way of unsaturated (vinyl) and saturated (ethyl) bridging groups. Heck reactions were found to yield these six compounds in easy-to-carry out 3-step reactions in yields of 50-76%. Preliminary results point to the potential of the anthracene compounds to serve as O2(1Δg) acceptors and would be amenable for future use in biological systems to expand the understanding of O2(1Δg) in biochemistry.
We report Monte Carlo simulations of phase behavior of colloidal suspensions with near-critical binary solvents using effective pair potentials from experiments. At off-critical solvent composition, ...the calculated phase diagram agrees well with measurements of the experimental system, indicating that many-body effects are limited. Close to the critical composition, however, agreement between experiment and simulation becomes poorer, signaling the increased importance of many-body effects. Both at and off the critical solvent concentration, the colloidal phase diagram is qualitatively similar to those of molecular systems and obeys the principle of corresponding states with one striking difference: it occurs in a narrow temperature interval of <1 °C below the solvent phase separation temperature.
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