We have developed a pyrolysis reactor based on a unique auger-paddle configuration with heat transfer material (HTM) and proved to achieve high heating rates and fast pyrolysis. We tested ten ...different biomass types and obtained bio-oil yields ranging from approximately 40% for thermally treated wood, to approximately 57% for crop residues (corn stover) and 67% yield for woody feedstocks (tulip poplar). These results, as well as the solid char yields, are similar to those obtained for the same feedstock using a circulating fluidized bed. Tests conducted without HTM resulted in lower bio-oil yields (ranging from 8 to 18% decrease in yield) and higher char yields with similar changes in magnitude, which is indicative of slow pyrolysis. In addition, a comprehensive study and analysis of the material residence time and mixing characteristics of the novel auger-paddle system is presented. These results demonstrate that an auger-paddle configuration is capable of achieving the high heating rates required for fast pyrolysis.
•A novel single shaft auger was developed to achieve uniform solid particle mixing.•The enhanced mixing reactor was validated for fast pyrolysis of biomass.•Material residence times and process parameters established mixing performance.
Germ-free mice were maintained on polysaccharide-rich or simple-sugar diets and colonized for 10 days with an organism also found in human guts, Bacteroides thetaiotaomicron, followed by whole-genome ...transcriptional profiling of bacteria and mass spectrometry of cecal glycans. We found that these bacteria assembled on food particles and mucus, selectively induced outer-membrane polysaccharide-binding proteins and glycoside hydrolases, prioritized the consumption of liberated hexose sugars, and revealed a capacity to turn to host mucus glycans when polysaccharides were absent from the diet. This flexible foraging behavior should contribute to ecosystem stability and functional diversity.
Motivation: Annotation of operons in a bacterial genome is an important step in determining an organism's transcriptional regulatory program. While extensive studies of operon structure have been ...carried out in a few species such as Escherichia coli, fewer resources exist to inform operon prediction in newly sequenced genomes. In particular, many extant operon finders require a large body of training examples to learn the properties of operons in the target organism. For newly sequenced genomes, such examples are generally not available; moreover, a model of operons trained on one species may not reflect the properties of other, distantly related organisms. We encountered these issues in the course of predicting operons in the genome of Bacteroides thetaiotaomicron (B.theta), a common anaerobe that is a prominent component of the normal adult human intestinal microbial community. Results: We describe an operon predictor designed to work without extensive training data. We rely on a small set of a priori assumptions about the properties of the genome being annotated that permit estimation of the probability that two adjacent genes lie in a common operon. Predictions integrate several sources of information, including intergenic distance, common functional annotation and a novel formulation of conserved gene order. We validate our predictor both on the known operons of E.coli and on the genome of B.theta, using expression data to evaluate our predictions in the latter. Availability: The software is available online at http://www.cse.wustl.edu/~jbuhler/research/operons Contact: jbuhler@cse.wustl.edu
1 Although its importance for plant mineral nutrition and nutrient cycling has long been recognized, the soil community has rarely been integrated into dynamical frameworks of plant populations, in ...spite of abundant evidence for its involvement. The concept of feedback may provide theoretical and experimental tools for investigating the importance of the soil community in the population ecology and evolution of plants. 2 A mathematical model demonstrates the potential for two divergent dynamics, with positive feedback leading to the loss of diversity at a local scale and negative feedback leading to its maintenance. A linear contrast of the growth of plants in association with their own soil communities compared to the growth of plants in association with each others' soil communities can be used to differentiate between these possibilities in empirical studies. 3 Spatially explicit computer simulations demonstrate that the dynamics of a spatially structured community, as the soil community is likely to be, can differ from those predicted for a well-mixed population. Specifically, diversity can be maintained between locally homogeneous patches when positive feedback and dispersal occur at local scales. 4 Using a simple experimental protocol, we have found substantial negative feedback on plant growth through the soil community, suggesting that it may be involved in the maintenance of plant species diversity. 5 We discuss the importance of the soil community in other areas of plant ecology and evolution, including the suggestion that interactions with the soil community may be involved in the maintenance of sexual or asexual reproductive systems.
We have undertaken a long-term project, Planets in Stellar Clusters Extensive Search, to search for transiting planets in open clusters. In this paper we present the results for NGC 2158, an ...intermediate-age, populous cluster. We have monitored the cluster for over 260 hours, spread over 59 nights. We have detected one candidate transiting low-luminosity object, with an eclipse depth of 3.7% in the R band. If the host star is a member of the cluster, the eclipse depth is consistent with a 1.7RJ object. Cluster membership of the host is supported by its location on the cluster main sequence and its close proximity to the cluster center (2'). We have discovered two other stars exhibiting low-amplitude (4%-5%) transits, V64 and V70, but they are most likely blends or field stars. Given the photometric precision and temporal coverage of our observations and the current best estimates for the frequency and radii of short-period planets, the expected number of detectable transiting planets in our sample is 0.13. We have observed four outbursts for the candidate cataclysmic variable V57. We have discovered 40 new variable stars in the cluster, bringing the total number of identified variables to 97, and present for them high-precision light curves, spanning 13 months.
Two independent experiments were conducted to investigate the influence of rhizosphere bacteria on the growth of Anthoxanthum odoratum and Panicum sphaero-carpon. We tested whether host-specific ...populations of Bacillus mycoides affected the growth of their Anthoxanthum and Panicum hosts and whether host-specific differences in Bacillus populations modified the strong detrimental effect of the root fungal pathogen, Pythium macrosporum. Our results showed both positive and negative effects of Bacillus inoculation and that Anthoxanthum and Panicum plants responded differently to Bacillus isolates that originated from different host plants. Anthoxanthum grew relatively better with isolates from Panicum, while Panicum grew relatively better with isolates from Anthoxanthum, consistent with a negative feedback. In both experiments Pythium infection was detrimental to plant growth, and Panicum was more negatively affected by inoculation with Pythium. Overall, Bacillus ameliorated the pathogenic effect of Pythium. However, there was no evidence that host-specific Bacillus populations had different effects on the interaction between these plant species and Pythium. Both host-specific differences in rhizosphere bacteria and host-specific accumulation of a fungal pathogen can generate negative feedback between these two plant species.
The following fictional case is intended as a learning tool within the Pathology Competencies for Medical Education (PCME), a set of national standards for teaching pathology. These are divided into ...three basic competencies: Disease Mechanisms and Processes, Organ System Pathology, and Diagnostic Medicine and Therapeutic Pathology. For additional information, and a full list of learning objectives for all three competencies, see http://journals.sagepub.com/doi/10.1177/2374289517715040.
Abstract
Patients with non-small-cell lung cancer (NSCLC) whose tumours harbour activating mutations within the epidermal growth factor receptor (EGFR) frequently derive significant clinical and ...radiographic benefits from treatment with EGFR tyrosine kinase inhibitors (TKIs). As such, prospective identification of EGFR mutations is now the standard of care worldwide. However, acquired therapeutic resistance to these agents invariably develops. Over the past 10 years, great strides have been made in defining the molecular mechanisms of EGFR TKI resistance in an effort to design rational strategies to overcome this acquired drug resistance. Approximately 60% of patients with acquired resistance to the EGFR TKIs (erlotinib, gefitinib, and afatinib) develop a new mutation within the drug target. This mutation-T790M-has been shown to alter drug binding and enzymatic activity of the mutant EGF receptor. Less common mechanisms of acquired resistance include MET amplification, ERBB2 amplification, transformation to small-cell lung cancer, and others. Here, we present a condensed overview of the literature on EGFR-mutant NSCLC, paying particular attention to mechanisms of drug resistance, recent clinical trial results, and novel strategies for identifying and confronting drug resistance, while also striving to identify gaps in current knowledge. These advances are rapidly altering the treatment landscape for EGFR-mutant NSCLC, expanding the armamentarium of available therapies to maximize patient benefit.
PurposeFive-fraction stereotactic ablative radiotherapy (SABR) regimens are frequently used to treat centrally located early-stage non-small cell lung cancer or disease in the proximity of the chest ...wall as a means of optimizing tumor control and reducing treatment toxicity. However, increasing these SABR regimens to 5 fractions may reduce tumor control outcomes. We sought to identify the clinical parameters predictive of treatment failures with these 5-fraction courses. MethodsNinety patients with T1-2 non-small cell lung cancer were treated with 50 or 60 Gy in 5 fractions. Failure over time was modeled using cumulative incidences of local, regional, or distant failure, with death as a competing risk. Cox proportional hazards analysis for incidences of failure was performed to control for patient variables. ResultsOf 90 patients, 24 of 53 patients with T1 tumors and 19 of 37 patients with T2 tumors received 50 Gy SABR, and the other 47 patients received 60 Gy. Two-year overall survival and progression-free survival for the whole cohort were 75.8% and 59.3%, respectively. Total SABR dose (50 vs 60 Gy) did not influence survival nor failure rates at 2 and 5 years. Within 2 years of treatment, 7.8% of all patients developed local failure. For all patient and tumor characteristics evaluated, only T stage and pretreatment positron emission tomography standardized uptake values served as predictors of local, regional, and distant failure at 2 and 5 years posttreatment on univariate and multivariable analysis. ConclusionsFive-fraction SABR provides excellent in-field control. T2 and high fluorodeoxyglucose uptake tumors have increased failure rates, suggesting the potential need for adjuvant therapies, which are being assessed in randomized phase 3 trials.
Objective Microbial invasion of the amniotic cavity (MIAC) is common in early preterm labor and is associated with maternal and neonatal infectious morbidity. MIAC is usually occult and is reliably ...detected only with amniocentesis. We sought to develop a noninvasive test to predict MIAC based on protein biomarkers in cervicovaginal fluid (CVF) in a cohort of women with preterm labor (phase 1) and to validate the test in an independent cohort (phase 2). Study Design This was a prospective study of women with preterm labor who had amniocentesis to screen for MIAC. MIAC was defined by positive culture and/or 16S ribosomal DNA results. Nine candidate CVF proteins were analyzed by enzyme-linked immunosorbent assay. Logistic regression was used to identify combinations of up to 3 proteins that could accurately classify the phase 1 cohort (N = 108) into those with or without MIAC. The best models, selected by area under the curve (AUC) of the receiver operating characteristic curve in phase 1, included various combinations of interleukin (IL)-6, chemokine (C-X-C motif) ligand 1 (CXCL1), alpha fetoprotein, and insulin-like growth factor binding protein-1. Model performance was then tested in the phase 2 cohort (N = 306). Results MIAC was present in 15% of cases in phase 1 and 9% in phase 2. A 3-marker CVF model using IL-6 plus CXCL1 plus insulin-like growth factor binding protein-1 had AUC 0.87 in phase 1 and 0.78 in phase 2. Two-marker models using IL-6 plus CXCL1 or alpha fetoprotein plus CXCL1 performed similarly in phase 2 (AUC 0.78 and 0.75, respectively), but were not superior to CVF IL-6 alone (AUC 0.80). A cutoff value of CVF IL-6 ≥463 pg/mL (which had 81% sensitivity in phase 1) predicted MIAC in phase 2 with sensitivity 79%, specificity 78%, positive predictive value 38%, and negative predictive value 97%. Conclusion High levels of IL-6 in CVF are strongly associated with MIAC. If developed into a bedside test or rapid laboratory assay, cervicovaginal IL-6 might be useful in selecting patients in whom the probability of MIAC is high enough to warrant amniocentesis or transfer to a higher level of care. Such a test might also guide selection of potential subjects for treatment trials.
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