Microbial interactions shape the structure and function of microbial communities; microbial co-occurrence networks in specific environments have been widely developed to explore these complex ...systems, but their interconnection pattern across microbiomes in various environments at the global scale remains unexplored. Here, we have inferred an Earth microbial co-occurrence network from a communal catalog with 23,595 samples and 12,646 exact sequence variants from 14 environments in the Earth Microbiome Project dataset.
This non-random scale-free Earth microbial co-occurrence network consisted of 8 taxonomy distinct modules linked with different environments, which featured environment specific microbial co-occurrence relationships. Different topological features of subnetworks inferred from datasets trimmed into uniform size indicate distinct co-occurrence patterns in the microbiomes of various environments. The high number of specialist edges highlights that environmental specific co-occurrence relationships are essential features across microbiomes. The microbiomes of various environments were clustered into two groups, which were mainly bridged by the microbiomes of plant and animal surface. Acidobacteria Gp2 and Nisaea were identified as hubs in most of subnetworks. Negative edges proportions ranged from 1.9% in the soil subnetwork to 48.9% the non-saline surface subnetwork, suggesting various environments experience distinct intensities of competition or niche differentiation. Video abstract CONCLUSION: This investigation highlights the interconnection patterns across microbiomes in various environments and emphasizes the importance of understanding co-occurrence feature of microbiomes from a network perspective.
Farmland soil heavy metal contamination could pose potential risks to ecosystems, food safety and human health ultimately. Regional researches on the long-term monitoring of heavy metals in a ...soil-rice grain system, changed with environmental policy adjustment, have been hindered by limited detailed data. In this study, we collected 169 paired paddy rice grain and corresponding soil samples from a former intensive electronic-waste dismantling region to survey the current status of heavy metal contamination, and to reveal the temporal trends over the past decade based on the previous data obtained in 2006 and 2011. Moderate contaminations of Cd, Cu, Zn and Ni were observed in soil currently. Furthermore, 20.7% of rice grain samples exceeded the Cd threshold value. Cd, Cu, Zn and Pb shared the similar spatial distribution pattern with higher concentrations in northwest, which were contrary to Cr, Ni and As. Risk assessment indicated that much attention is required for the carcinogenic risk of Cr, Cd and As and non-carcinogen risk of Cr. Combining the spatial distribution of heavy metals in soil and rice grains, and the potential ecological risks, with the human health risks, the middle-west rice paddies were identified and proposed as priority areas. Percentage of soil Pb, Cd and Zn decreased in most area and slightly increased in northwest and east. Cu decreased in southwest and increased in central part, while Ni slightly increased in the whole region between 2006 and 2016. With the scrutiny of strict environmental policy, Cd still remained relatively constant levels in soil and rice grains during the last decade, which confirmed that the heavy metals were persisted over the long duration. Target sustainable and ongoing green remediation methods should be adopted urgently in specific area to guarantee food safety and human health for local residents.
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•Long-term site-specific monitoring of heavy metals in soil-rice grain system.•Heavy metal concentrations were mapped against specific element thresholds.•Priority area was proposed based on maps of metal concentration and risks.•Zonal governance and target sustainable remediation are emphasized.
Cadmium in a soil-rice grain system kept a constant level during the last decade and the middle-west was identified as a priority area based on the prediction of metal concentration, ecological risk and human health risk.
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•Mycobacterium sp. WY10 is an efficient PAHs-degrader with 53 functional genes.•A detailed PHE and PYR metabolism maps were constructed with metabolic results.•PHE was degraded in a ...dominant phthalate pathway and a minor salicylate pathway.•Both phthalate and salicylate pathways played important roles on PYR degradation.
Mycobacterium sp. WY10 was a highly effective PAHs-degrading bacterium that can degrade phenanthrene (PHE, 100 mg L−1) completely within 60 h and 83% of pyrene (PYR, 50 mg L-1) in 72 h. In this study, ten and eleven metabolites, respectively, were identified in PHE and PYR degradation cultures, and a detailed PHE and PYR metabolism maps were constructed based on the metabolic results. The strain WY10 degraded PHE and PYR with initial dioxygenation mainly on 3,4- and 4,5-carbon positions, respectively. Thereafter, PYR degradation entered the PHE degradation pathway via the ortho-cleavage. It was observed that the “lower pathway” of PHE and PYR degradations were different. Based on the kinetics of residual metabolites, PHE was degraded in a dominant phthalate pathway and a minor salicylate pathway. However, both phthalate and salicylate pathways played important roles on PYR degradation. The WY10 genome revealed there were fifty-three genes related to PAHs degradations, including a complete gene set for PHE and PYR degradation via the phthalate pathway. The candidate gene/ORF, BOH72_19755, encoding salicylate synthase might contribute in the salicylate pathway.
We performed a nationwide, retrospective study to determine the incidence and causes of drug-induced liver injury (DILI) in mainland China.
We collected data on a total of 25,927 confirmed DILI ...cases, hospitalized from 2012 through 2014 at 308 medical centers in mainland China. We collected demographic, medical history, treatment, laboratory, disease severity, and mortality data from all patients. Investigators at each site were asked to complete causality assessments for each case whose diagnosis at discharge was DILI (n = 29,478) according to the Roussel Uclaf Causality Assessment Method.
Most cases of DILI presented with hepatocellular injury (51.39%; 95% confidence interval CI 50.76–52.03), followed by mixed injury (28.30%; 95% CI 27.73–28.87) and cholestatic injury (20.31%; 95% CI 19.80–20.82). The leading single classes of implicated drugs were traditional Chinese medicines or herbal and dietary supplements (26.81%) and antituberculosis medications (21.99%). Chronic DILI occurred in 13.00% of the cases and, although 44.40% of the hepatocellular DILI cases fulfilled Hy’s Law criteria, only 280 cases (1.08%) progressed to hepatic failure, 2 cases underwent liver transplantation (0.01%), and 102 patients died (0.39%). Among deaths, DILI was judged to have a primary role in 72 (70.59%), a contributory role in 21 (20.59%), and no role in 9 (8.82%). Assuming the proportion of DILI in the entire hospitalized population of China was represented by that observed in the 66 centers where DILI capture was complete, we estimated the annual incidence in the general population to be 23.80 per 100,000 persons (95% CI 20.86–26.74). Only hospitalized patients were included in this analysis, so the true incidence is likely to be higher.
In a retrospective study to determine the incidence and causes of DILI in mainland China, the annual incidence in the general population was estimated to be 23.80 per 100,000 persons; higher than that reported from Western countries. Traditional Chinese medicines, herbal and dietary supplements, and antituberculosis drugs were the leading causes of DILI in mainland China.
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Cropland is a main source of global nitrogen pollution
. Mitigating nitrogen pollution from global croplands is a grand challenge because of the nature of non-point-source pollution from millions of ...farms and the constraints to implementing pollution-reduction measures, such as lack of financial resources and limited nitrogen-management knowledge of farmers
. Here we synthesize 1,521 field observations worldwide and identify 11 key measures that can reduce nitrogen losses from croplands to air and water by 30-70%, while increasing crop yield and nitrogen use efficiency (NUE) by 10-30% and 10-80%, respectively. Overall, adoption of this package of measures on global croplands would allow the production of 17 ± 3 Tg (10
g) more crop nitrogen (20% increase) with 22 ± 4 Tg less nitrogen fertilizer used (21% reduction) and 26 ± 5 Tg less nitrogen pollution (32% reduction) to the environment for the considered base year of 2015. These changes could gain a global societal benefit of 476 ± 123 billion US dollars (USD) for food supply, human health, ecosystems and climate, with net mitigation costs of only 19 ± 5 billion USD, of which 15 ± 4 billion USD fertilizer saving offsets 44% of the gross mitigation cost. To mitigate nitrogen pollution from croplands in the future, innovative policies such as a nitrogen credit system (NCS) could be implemented to select, incentivize and, where necessary, subsidize the adoption of these measures.
In order to identify spatial relationship of heavy metals in soil–rice system at a regional scale, 96 pairs of rice and soil samples were collected from Wenling in Zhejiang province, China, which is ...one of the well-known electronic and electric waste recycling centers. The results indicated some studied areas had potential contaminations by heavy metals, especially by Cd. The spatial distribution of Cd, Cu, Pb and Zn illustrated that the highest concentrations were located in the northwest areas and the accumulation of these metals may be due to the industrialization, agricultural chemicals and other human activities. In contrast, the concentration of Ni decreased from east to west and the mean concentration was below the background value, indicating the distribution of Ni may be naturally controlled. Enrichment index (EI) was used to describe the availability of soil heavy metals to rice. The spatial distribution of EIs for Cd, Ni and Zn exhibited a west-east structure, which was similar with the spatial structures of pH, OM, sand and clay. Cross-correlograms further quantitatively illustrated the EIs were significantly correlated with most soil properties, among which; soil pH and OM had the strongest correlations with EIs. However, EI of Cu showed relative weak correlations with soil properties, especially soil pH and OM had no correlations with EI of Cu, indicating the availability of Cu may be influenced by other factors.
Patients with metastatic gastric cancer (mGC) who do not respond to or who experience progression with second-line chemotherapy have no treatment options that clearly confer a survival benefit. This ...trial investigated the safety and efficacy of apatinib, an inhibitor of vascular endothelial growth factor receptor, as a treatment option for heavily pretreated patients with mGC.
Patients who experienced treatment failure with at least two chemotherapeutic regimens were randomly assigned to receive placebo (group A), apatinib 850 mg once daily (group B), or apatinib 425 mg twice daily (group C).
We enrolled 144 patients onto this study. In groups A, B, and C, the median overall survival (OS) times were 2.50 months (95% CI, 1.87 to 3.70 months), 4.83 months (95% CI, 4.03 to 5.97 months), and 4.27 months (95% CI, 3.83 to 4.77 months), respectively, and the median progression-free survival (PFS) times were 1.40 months (95% CI, 1.20 to 1.83 months), 3.67 months (95% CI, 2.17 to 6.80 months), and 3.20 months (95% CI, 2.37 to 4.53 months), respectively. There were statistically significant differences between the apatinib and placebo groups for both PFS (P < .001) and OS (P < .001 and P = .0017). Nine patients had a partial response (three patients in group B and six patients in group C). Toxicities were tolerable or could be clinically managed. The most common grade 3 to 4 adverse events were hand-foot syndrome and hypertension. Hematologic toxicities were moderate, and grade 3 to 4 hematologic toxicities were rare.
Apatinib showed improved PFS and OS in heavily pretreated patients with mGC who had experienced treatment failure with two or more chemotherapy regimens.
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•The distribution of available metals varies with different aggregates.•Remediation agents may reduce microbial biomass and bacterial diversity.•Available metals are the main factors ...modulating bacterial community structure.•The remediation agents increase bacterial function by reducing heavy metal stress.
Heavy metal remediation agents have been widely used in contaminated soils, but the remediation effects on heavy metals in soil aggregates and the effects on the structure and function of the microbial communities in aggregates have rarely been reported. Here, sodium silicate, sepiolite, quicklime and monocalcium phosphate were added to soil contaminated with Cu, Zn and Cd. Rice was grown as a test crop. Rice plants and soil samples were then collected after the rice was harvested. The remediation agents decreased the available heavy metal concentrations of both the soil aggregates and rice plants mainly by increasing the soil pH. The changes in bacterial community structure were mainly related to the contents of available heavy metals, and the addition of remediation agents changed the microbial composition. Sodium silicate and sepiolite increased the microbial biomass content in the soil aggregates, while quicklime decreased both microbial biomass and bacterial α-diversity in the soil aggregates. Remediation agents can increase the predicted expression intensity of heavy metal resistance genes and C and N metabolism genes by decreasing the contents of available heavy metals. The influence of heavy metal remediation agents on microbial community structure and function should be considered when selecting heavy metal remediation agents.
The three homologous members of the p160 SRC family (SRC1, SRC2 and SRC3) mediate the transcriptional functions of nuclear receptors and other transcription factors, and are the most studied of all ...the transcriptional co-activators. Recent work has indicated that the SRCgenes are subject to amplification and overexpression in various human cancers. Some of the molecular mechanisms responsible for SRC overexpression, along with the mechanisms by which SRCs promote breast and prostate cancer cell proliferation and survival, have been identified, as have the specific contributions of individual SRC family members to spontaneous breast and prostate carcinogenesis in genetically manipulated mouse models. These studies have identified new challenges for cancer research and therapy.
Celotno besedilo
Dostopno za:
DOBA, IJS, IZUM, KILJ, NUK, PILJ, PNG, SAZU, UILJ, UKNU, UL, UM, UPUK
Basal cells (BCs) are p63-expressing multipotent progenitors of skin, tracheoesophageal and urinary tracts. p63 is abundant in developing airways; however, it remains largely unclear how embryonic ...p63+ cells contribute to the developing and postnatal respiratory tract epithelium, and ultimately how they relate to adult BCs. Using lineage-tracing and functional approaches in vivo, we show that p63+ cells arising from the lung primordium are initially multipotent progenitors of airway and alveolar lineages but later become restricted proximally to generate the tracheal adult stem cell pool. In intrapulmonary airways, these cells are maintained immature to adulthood in bronchi, establishing a rare p63+Krt5− progenitor cell population that responds to H1N1 virus-induced severe injury. Intriguingly, this pool includes a CC10 lineage-labeled p63+Krt5− cell subpopulation required for a full H1N1-response. These data elucidate key aspects in the establishment of regionally distinct adult stem cell pools in the respiratory system, potentially with relevance to other organs.
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•Embryonic p63+ cells before E10.5 generate both airway and alveolar descendants•Further p63 lineage restriction at E13.5 defines the tracheal basal progenitor pool•H1N1-induced Krt5+ pods originate from the embryonic intrapulmonary p63+ progenitors•Intrapulmonary CC10 lineage-labeled p63+ cells are required for a full H1N1 response
Yang et al. show that embryonic p63+ cells are initially multipotent progenitors of airways and alveoli. Later, however, they become proximally restricted to generate tracheal basal cells and an intrapulmonary p63+Krt5− progenitor pool that is maintained immature to adulthood. This pool contains p63+CC10Lineage+ cells and mediates H1N1 virus-induced pathological remodeling.
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