Time series are a critical component of ecological analysis, used to track changes in biotic and abiotic variables. Information can be extracted from the properties of time series for tasks such as ...classification (e.g., assigning species to individual bird calls); clustering (e.g., clustering similar responses in population dynamics to abrupt changes in the environment or management interventions); prediction (e.g., accuracy of model predictions to original time series data); and anomaly detection (e.g., detecting possible catastrophic events from population time series). These common tasks in ecological research all rely on the notion of (dis-) similarity, which can be determined using distance measures. A plethora of distance measures have been described, predominantly in the computer and information sciences, but many have not been introduced to ecologists. Furthermore, little is known about how to select appropriate distance measures for time-series-related tasks. Therefore, many potential applications remain unexplored. Here, we describe 16 properties of distance measures that are likely to be of importance to a variety of ecological questions involving time series. We then test 42 distance measures for each property and use the results to develop an objective method to select appropriate distance measures for any task and ecological dataset. We demonstrate our selection method by applying it to a set of real-world data on breeding bird populations in the UK and discuss other potential applications for distance measures, along with associated technical issues common in ecology. Our real-world population trends exhibit a common challenge for time series comparisons: a high level of stochasticity. We demonstrate two different ways of overcoming this challenge, first by selecting distance measures with properties that make them well suited to comparing noisy time series and second by applying a smoothing algorithm before selecting appropriate distance measures. In both cases, the distance measures chosen through our selection method are not only fit-for-purpose but are consistent in their rankings of the population trends. The results of our study should lead to an improved understanding of, and greater scope for, the use of distance measures for comparing ecological time series and help us answer new ecological questions.
Coasts under stress Ommer, Rosemary E
Coasts under stress,
c2007, 2007, 20070808, 2007-08-08, 20070101
eBook, Book
Rosemary Ommer and her project team combine formal scientific (natural and social) and humanist analysis with an examination of the lived experience of coastal people. They analyze community erosion ...created by economic decline and the ecosystem damage caused by unrelenting industrial pressure on natural resources and look at the history of coastal communities, their resource bases, their economies, and the way the lives of people are embedded in their environments.
The finding that regular spatial patterns can emerge in nature from local interactions between organisms has prompted a search for the ecological importance of these patterns. Theoretical models have ...predicted that patterning may have positive emergent effects on fundamental ecosystem functions, such as productivity. We provide empirical support for this prediction. In dryland ecosystems, termite mounds are often hotspots of plant growth (primary productivity). Using detailed observations and manipulative experiments in an African savanna, we show that these mounds are also local hotspots of animal abundance (secondary and tertiary productivity): insect abundance and biomass decreased with distance from the nearest termite mound, as did the abundance, biomass, and reproductive output of insect-eating predators. Null-model analyses indicated that at the landscape scale, the evenly spaced distribution of termite mounds produced dramatically greater abundance, biomass, and reproductive output of consumers across trophic levels than would be obtained in landscapes with randomly distributed mounds. These emergent properties of spatial pattern arose because the average distance from an arbitrarily chosen point to the nearest feature in a landscape is minimized in landscapes where the features are hyper-dispersed (i.e., uniformly spaced). This suggests that the linkage between patterning and ecosystem functioning will be common to systems spanning the range of human management intensities. The centrality of spatial pattern to system-wide biomass accumulation underscores the need to conserve pattern-generating organisms and mechanisms, and to incorporate landscape patterning in efforts to restore degraded habitats and maximize the delivery of ecosystem services.
Celotno besedilo
Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Yucatán Box Turtles (Terrapene yucatana) are the only fully tropical lineage of box turtles (Terrapene spp.). We studied the ecology, movements, behavior, and habitat associations of T. yucatana in ...northern Yucatán, México, over 218 field days from 2014–2019. We estimated the size of two subpopulations to comprise 36.6 and 3.0 turtles, with corresponding densities of 2.29 and 0.39 turtles/ha, respectively. We obtained 2,808 radio locations from radiotelemetry of 20 adults. We estimated an annual survivorship rate over a 5-yr period exceeding 0.989. For both sexes combined, the average annual 95% minimum convex polygon (MCP) home range size was 0.684 ha, and the average distance between consecutive annual home range centroids was 22.5 m. In 2 of 5 yr, males exhibited significantly larger 95% MCP home ranges than females. We observed feeding, courtship, and fighting in the wild between June and December. Females moved more than males in July, when gravid turtles were also observed. We found that T. yucatana was positively associated with Mimosa sp. and Bromelia spp. The use of aquatic habitats was infrequent (0.17%). Our findings support the conclusion that T. yucatana, an allopatric and fully tropical lineage, is an interior forest and thornscrub species that occurs at low densities. In such undisturbed contexts, T. yucatana may exhibit high survivorship rates, small home range size, and home range fidelity that underscore the importance of large-scale forest conservation efforts in concert with the targeted protection of documented Yucatán Box Turtle populations. La tortuga de caja de Yucatán (Terrapene yucatana) es el único linaje completamente tropical de tortugas de caja (Terrapene spp.). Realizamos un estudio de la ecología, movimientos, comportamiento y asociaciones de hábitat de T. yucatana en el norte de Yucatán, México, durante 218 días de campo entre 2014 y 2019. Estimamos el tamaño de dos poblaciones comprendidas en 36,6 y 3,0 tortugas, respectivamente, con densidades correspondientes a 2,29 y 0,39 tortugas / ha. Obtuvimos 2,808 radiolocalizaciones de 20 tortugas adultas. Estimamos una tasa de supervivencia anual superior a 0,989 basado en el marcado y recaptura de 37 individuos. Para ambos sexos, el tamaño medio anual del área de distribución (95% del MCP) fue de 0,684 ha, y la distancia entre los centroides del área de distribución anual consecutivos fue de 22,5 m. Los machos exhibieron rangos de distribución significativamente mayores que las hembras en 2 de los 5 años. Observamos alimentación, cortejo y peleas en su estado natural entre junio y diciembre. Las hembras se movieron más que los machos en julio, cuando también se observaron tortugas grávidas. Encontramos que T. yucatana se asoció positivamente con Mimosa sp. y Bromelia spp. El uso de hábitats acuáticos fue infrecuente (0,17%). Terrapene yucatana, un linaje alopátrico y completamente tropical de las tortugas de caja de América del Norte, es una especie de bosque interior y matorrales espinosos que ocurre en densidades bajas. En ambientes no perturbados, T. yucatana puede exhibir altas tasas de supervivencia, un ámbito hogareño pequeño y una notable fidelidad a su ámbito doméstico, lo que acentúa la importancia de los esfuerzos de conservación de bosques a gran escala junto con la protección específica de poblaciones documentadas de tortugas de caja.
1. Although there is ample support for positive species richness–productivity relationships in planted grassland experiments, a recent 48‐site study found no diversity–productivity relationship (DPR) ...in herbaceous communities. Thus, debate persists about diversity effects in natural versus planted systems. Additionally, current knowledge is weak regarding the influence of evenness on the DPRs, how DPRs are affected by the variation in life‐history traits among constituent species in polycultures and how DPRs differ among biomes. The impacts of these factors on DPRs in forest ecosystems are even more poorly understood. 2. We performed a meta‐analysis of 54 studies to reconcile DPRs in forest ecosystems. We quantified the net diversity effect as log effect size ln(ES), the log ratio of the productivity in polycultures to the average of those in monocultures within the same type of mixture, site condition and stand age of each study. The first use of a boosted regression tree model in meta‐analysis, a useful method to partition the effects of multiple predictors rather than relying on vote‐counting of individual studies, unveiled the relative influences of individual predictors. 3. Global average ln(ES) was 0.2128, indicating 23.7% higher productivity in polycultures than monocultures. The final model explained 21% of the variation in ln(ES). The predictors that substantially accounted for the explained variation included evenness (34%), heterogeneity of shade tolerance (29%), richness (13%) and stand age (15%). In contrast, heterogeneity of nitrogen fixation and growth habits, biome and stand origin (naturally established versus planted) contributed negligibly (each ≤ 4%). Log effect size strongly increased with evenness from 0.6 to 1 and with richness from 2 to 6. Furthermore, it was higher with heterogeneity of shade tolerance and generally increased with stand age. 4. Synthesis. Our analysis is, to our knowledge, the first to demonstrate the critical role of species evenness, richness and the importance of contrasting traits in defining net diversity effects in forest polycultures. While testing the specific mechanisms is beyond the scope of our analysis, our results should motivate future studies to link richness, evenness, contrasting traits and life‐history stage to the mechanisms that are expected to produce positive net biodiversity effects such as niche differentiation, facilitation and reduced Janzen–Connell effects.
Species enter and persist in local communities because of their ecological fit to local conditions, and recently, ecologists have moved from measuring diversity as species richness and evenness, to ...using measures that reflect species ecological differences. There are two principal approaches for quantifying species ecological differences: functional (trait‐based) and phylogenetic pairwise distances between species. Both approaches have produced new ecological insights, yet at the same time methodological issues and assumptions limit them. Traits and phylogeny may provide different, and perhaps complementary, information about species' differences. To adequately test assembly hypotheses, a framework integrating the information provided by traits and phylogenies is required. We propose an intuitive measure for combining functional and phylogenetic pairwise distances, which provides a useful way to assess how functional and phylogenetic distances contribute to understanding patterns of community assembly. Here, we show that both traits and phylogeny inform community assembly patterns in alpine plant communities across an elevation gradient, because they represent complementary information. Differences in historical selection pressures have produced variation in the strength of the trait‐phylogeny correlation, and as such, integrating traits and phylogeny can enhance the ability to detect assembly patterns across habitats or environmental gradients.
1. Land-use change is the main driver of global biodiversity loss, but its relative impact on species turnover (β-diversity) across multiple spatial scales remains unclear. Plant communities in ...fragmented rain forests can undergo declines (floristic homogenization) or increases (floristic differentiation) in β-diversity. 2. We tested these alternative hypotheses analysing a large vegetation data base from a hierarchically nested sampling design (450 plots in 45 forest patches in 3 landscapes with different deforestation levels) at Los Tuxtlas rain forest, Mexico. Differences in β-diversity across spatial scales (i.e. among plots, among patches, and among landscapes) were analysed using multiplicative diversity decompositions of Hill numbers. 3. Plant β-diversity among plots within forest patches decreased in landscapes with higher deforestation levels, leading to floristic homogenization within patches. This homogenization process can be explained by the loss of rare and shade-tolerant plant species, and the recruitment and dominance of disturbance-adapted species, and can limit the accumulation of species (γ-diversity) in landscapes with higher deforestation. 4. Nevertheless, the landscape with the highest deforestation level showed the highest floristic differentiation among patches. This landscape showed the greatest isolation distances between patches; a landscape spatial pattern that can limit the interchange of seeds (and species) between patches. Because the study patches are undergoing secondary succession following disturbances (e.g. logging, edge effects), different disturbance regimes and increased distance among patches could lead to higher β-diversity. 5. Synthesis. These findings indicate that patterns of floristic homogenization and differentiation depend on the landscape configuration and on the spatial scale of analysis. At the landscape scale, our results suggest that, in accordance with non-equilibrium dynamics and the landscape-divergence hypothesis, patches located in landscapes with different forest cover and different connectivity can experience contrasting successional pathways due to increasing levels of compositional differentiation between patches. These novel findings add further uncertainties to the maintenance of biodiversity in severely deforested tropical landscapes and have key ecological implications for biodiversity conservation planning.
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