Bdellovibrio bacteriovorus is an endobiotic bacterial predator that encodes multiple enzymes related to known peptidoglycan (PG) modifiers, which are necessary for predation to occur. Additionally, a ...plethora of cryptic proteins are expressed and upregulated during predation. It has been shown that L,D-transpeptidases (LDTs) are required for bdelloplast formation and stabilisation. These LDTs cluster in six groups in B. bacteriovorus HD100, nevertheless, no further LDT information has been previously described. Here we have determined and analysed the structures of LDTs Bd0566, Bd1075, Bd3334 and Bd3741, showing that even though they share a structurally conserved catalytic domain, they have acquired accessory domains and motifs characteristic to each LDT group. Moreover, we have integrated these novel structures with the previously solved structures of Bd0553, Bd0886 and Bd1402, generating a panel of seven LDTs representing the six groups of B. bacteriovorus HD100, allowing us to propose possible roles and the structural determinants defining the transferase/crosslinking or hydrolytic activities of each group. Further, we report the structure of two predatory NlpC/P60 amidohydrolases/peptidases, Bd0601 and Bd1177. We have determined that Bd0601 is a DUF1460 amidohydrolase, wherein the PG stem peptide binding groove is blocked by a tyrosine residue, suggesting the need of a conformational rearrangement for substrate binding. On the other hand, we have determined that Bd1177 is a bilobular NlpC/P60, wherein the active site is located in the interface between the catalytic N-terminal domain and a novel C-terminal regulatory domain, suggesting that Bd1177 fluctuates to an open conformation upon substrate binding. Finally, we have determined the crystallographic structure of the cryptic secreted protein Bd0675, depicting a novel fold. The solved structure depicts a prominent central acidic and aromatic groove delimited by a conserved disulphide-stabilised loop, suggesting that this protein has ligand binding functions. Based on the solved structure we have tested different candidate ligands; however further experiments are required to propose a function for Bd0675. In addition, due to its novelty, Bd0675 was used as target for multiple structure predicting algorithms in CASP14.
Predators impose a strong selective pressure on the behavioural traits of prey species. Group living, or sociability, allows individuals to reduce their own risk of predation through avoidance, ...dilution, and confusion effects. Another potentially beneficial mechanism is behavioural lateralisation, or "handedness", the asymmetrical expression of cognitive brain functions through a directional bias in visual or motor tasks. In my thesis, I explore the interaction between behavioural lateralisation, sociability, and predation in both natural and captive populations of Trinidadian guppies (Poecilia reticulata). In Chapter Two, I examine the consistency between current behavioural lateralisation methodologies and assess the assumptions behind these methods, including the number of incorporated turn choices and the impact of random chance. In Chapter Three, I present the use of environmental DNA in assessing natural piscine guppy predator communities at six sites across the Northern Range of Trinidad. Using this measure of predation, I assess its viability in predicting differentiation of adaptive anti-predatory behaviours in natural guppies, including sociability, activity, and both visual and motor lateralisation. In Chapter Four, I assess the visual lateralisation of guppies tested either solitarily or in groups in the presence or absence of a live predator, the blue acara (Andinoacara pulcher). Using a repeated measures design, I investigate the repeatability of guppies' visual lateralisation in terms of personality variation across the investigated contexts. In Chapter Five, I assess the visual lateralisation of natural guppies when viewing a social stimulus and their sociability across a gradient of predation risk using nineteen sites in the Northern Range of Trinidad. Overall, my research demonstrates relatively low levels of lateralisation throughout contexts and populations. However, subtle trends in the lateralisation of eye-use when viewing a predatory or social stimulus appear to exist in relation to predation risk, with an apparent social conformity in lateralisation when assessed in groups.
The oriental fruit fly, Bactrocera dorsalis, negatively impacts global agriculture. One promising mitigation strategy is biological control, emphasizing a comprehensive understanding of predator ...influences: specifically, the effects of predation risk on B. dorsalis development and reproduction. Our study investigated the predation risk effects of the mantis Hierodula patellifera Serville on B. dorsalis. We found that exposure to this predator or its odor shortened developmental time and increased fecundity in female B. dorsalis. However, male development and the death weights for both sexes remained stable. Our findings extend the understanding of H. patellifera’s predation risk effects on B. dorsalis’ life history, shedding light on potential alterations in the fitness and population dynamics of B. dorsalis. Additionally, we identified the use of predator odor as a possible innovative method for controlling B. dorsalis. Predators are dependent on the capture of prey to meet their energetic and nutritive requirements, which brings the risk of predation to prey. The predation risk is divided into consumptive and non-consumptive effects. Non-consumptive effects may manifest through altered growth and ontogenetic trajectories in prey species, a dynamic modulated by olfactory or other sensory cues from predators. Bactrocera dorsalis Hendel represents a major invasive threat to global horticulture. While earlier research was primarily centered on the consumptive interactions between B. dorsalis and its natural enemies, the potential consequences of non-consumptive interactions on the development of B. dorsalis have been overlooked. In this study, we investigated the impact of predation risk effects, induced by both visual exposure to the predatory mantis Hierodula patellifera Serville and its associated odor, on the life history traits of B. dorsalis. Female B. dorsalis demonstrated a reduced developmental time in the presence of a caged predator (H. patellifera) or predator odors, but showed significantly increased fecundity. Conversely, males displayed no significant change in developmental time. Additionally, neither the female nor male body weight at death was significantly influenced by the predation risk from the caged predator or predator odors. This study investigated the effects of predation risk on the development and reproduction of B. dorsalis, emphasizing the potential importance of odor risk in biological and pest control.
Celotno besedilo
Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, UILJ, UKNU, UL, UM, UPUK
The nocturnal feeding behavior and zoogeographical habitat of cookiecutter sharks Isistius brasiliensis and Isistius plutodus (Isistius spp.) greatly reduces interaction of this species with live ...humans. Attacks on live humans are exceedingly rare with 7 cases reported worldwide, 6 of them in Hawai?i, and 5 of these occuring among channel swimmers. Published research suggests that periods of bright moonlight may increase Isistius spp. contact with live humans and does not otherwise identify significant trends or risk factors. Yet 5 of the 6 Isistius spp. bites on live humans in Hawai?ian waters occurred with the moon set and after nautical twilight end and before nautical twilight start. From 1961-2023 in Hawai?i, 129 successful solo channel crosses and 5 Isistius spp. related injuries in the habitat of cookiecutter sharks were analyzed across two groups: one where both the moon and sun were set (dark group) and one where the moon and/or sun was in the sky (light group). There was a significant difference for swimmers bitten by Isistius spp. in the dark 4 (12%) versus light groups 1 (1%), p = 0.012, RR 12.6 (95% confidence interval: 1.5-108.9). Swim start time and year was also significant (Pearson correlation 0.566, p <0.001). Swimmer gender and use of shark deterrent devices and artificial illumination were not significant. The growing popularity of channel swimming in Hawai?i and swim start times have contributed to an increasing likelihood of live human and Isistius spp. contact and a moonless night sky is a significant risk factor for this interaction.
Celotno besedilo
Dostopno za:
DOBA, IZUM, KILJ, NUK, PILJ, PNG, SAZU, SIK, UILJ, UKNU, UL, UM, UPUK
Selection of prey that are small and in poor body condition is a widespread phenomenon in terrestrial predator–prey systems and may benefit prey populations by removing substandard individuals. ...Similar selection is widely assumed to operate in aquatic systems. Indeed, size‐selective predation is a longstanding and central tenet of aquatic food web theory. However, it is not known if aquatic predators select prey based on their condition or state, compared to their size. Surprisingly, no comparable information is available for marine systems because it is exceedingly difficult to make direct observations in this realm. Thus the role of body condition in regulating susceptibility to predation remains a black box in the marine environment. Here we have exploited an ideal model system to evaluate selective predation on pelagic marine fish: comparing characteristics (fork length, mass corrected for fork length) of fresh, whole, intact juvenile Pacific salmon delivered by a seabird to its single nestling with salmon collected concurrently in coastal trawl surveys. Three species of juvenile salmon (Oncorhynchus spp.) are consumed by provisioning Rhinoceros Auklets (Cerorhinca monocerata); an abundant, colonial, pursuit‐diving seabird. Samples were collected from multiple colonies and fisheries surveys in coastal British Columbia in two years. As predicted, Auklets preyed on small individuals in poor condition and consistently selected them at levels higher than their relative availability. This is the first study to provide direct evidence for both size‐ and condition‐selective predation on marine fish in the wild. We anticipate that our results will be a starting point in evaluating how selective predation may structure or influence marine fish populations and bridges a fundamental incongruity between ecological theory and application; although “bigger is better” is considered a fundamental tenet of marine food webs, marine predators are often assumed to consume indiscriminately.
Colombia is currently the fourth palm oil crop producer in the world and the top producer in South America (Torres-Carrasco et al. 2013), leading to an accelerated series of changes in many ...landscapes (Balaguera-Reina & González-Maya 2010). To date few studies have assessed biodiversity in palm-oil plantations in the country, in which large and medium-sized felids (Panthera onca, Leopardus pardalis, and Puma yagouaroundi) have been recorded, however, pumas (Puma concolor) have been exclusively recorded in forests and forest-edges (Boron & Payán 2012). Nevertheless, studies regarding ecological interactions and use by these species in these human-made landscapes are still missing.
ABSTRACT
The impact of increasing vertebrate predator numbers on bird populations is widely debated among the general public, game managers and conservationists across Europe. However, there are few ...systematic reviews of whether predation limits the population sizes of European bird species. Views on the impacts of predation are particularly polarised in the UK, probably because the UK has a globally exceptional culture of intensive, high‐yield gamebird management where predator removal is the norm. In addition, most apex predators have been exterminated or much depleted in numbers, contributing to a widely held perception that the UK has high numbers of mesopredators. This has resulted in many high‐quality studies of mesopredator impacts over several decades. Here we present results from a systematic review of predator trends and abundance, and assess whether predation limits the population sizes of 90 bird species in the UK. Our results confirm that the generalist predators Red Fox (Vulpes vulpes) and Crows (Corvus corone and C. cornix) occur at high densities in the UK compared with other European countries. In addition, some avian and mammalian predators have increased numerically in the UK during recent decades. Despite these high and increasing densities of predators, we found little evidence that predation limits populations of pigeons, woodpeckers and passerines, whereas evidence suggests that ground‐nesting seabirds, waders and gamebirds can be limited by predation. Using life‐history characteristics of prey species, we found that mainly long‐lived species with high adult survival and late onset of breeding were limited by predation. Single‐brooded species were also more likely to be limited by predation than multi‐brooded species. Predators that depredate prey species during all life stages (i.e. from nest to adult stages) limited prey numbers more than predators that depredated only specific life stages (e.g. solely during the nest phase). The Red Fox and non‐native mammals (e.g. the American Mink Neovison vison) were frequently identified as numerically limiting their prey species. Our review has identified predator–prey interactions that are particularly likely to result in population declines of prey species. In the short term, traditional predator‐management techniques (e.g. lethal control or fencing to reduce predation by a small number of predator species) could be used to protect these vulnerable species. However, as these techniques are costly and time‐consuming, we advocate that future research should identify land‐use practices and landscape configurations that would reduce predator numbers and predation rates.
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