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Cazzanelli, Giulia; Dalle Vedove, Andrea; Spagnolli, Giovanni; Terruzzi, Luca; Colasurdo, Enrica; Boldrini, Alberto; Patsilinakos, Alexandros; Sturlese, Mattia; Grottesi, Alessandro; Biasini, Emiliano; Provenzani, Alessandro; Quattrone, Alessandro; Lolli, Graziano
Journal of chemical information and modeling, 2024-Mar-11, 2024-03-11, Letnik: 64, Številka: 5Journal Article
Epitranscriptomic mRNA modifications affect gene expression, with their altered balance detected in various cancers. YTHDF proteins contain the YTH reader domain recognizing the m A mark on mRNA and represent valuable drug targets. Crystallographic structures have been determined for all three family members; however, discrepancies are present in the organization of the m A-binding pocket. Here, we present new crystallographic structures of the YTH domain of YTHDF1, accompanied by computational studies, showing that this domain can exist in different stable conformations separated by a significant energetic barrier. During the transition, additional conformations are explored, with peculiar druggable pockets appearing and offering new opportunities for the design of YTH-interfering small molecules.
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