Summary We explore the mortality rate of disentangled sea trout in whitefish fishery using gillnets with a 35–43 mm bar length. The study was conducted during the main fishing seasons in the Gulf of Bothnia in the northern Baltic Sea. Overall 59.5% of the sea trout were alive at the end of a 2–7 day observation period following release from the gillnets. Altogether, 12.1% of the captured fish were found dead in gillnets and 28.4% died due to injuries during an extended observation period. The average length of the captured sea trout was 435 mm, indicating that the majority were spending their first or second year at sea. The proportion of the survived and not injured (no observed damage) fish was highest in larger fish, >450 mm. The injured and not injured fish died equally frequently. Post capture survival was not connected to the removal time from gillnets or type of observed injuries but to the type of entanglement. Most of the fish were entangled by a mesh around the body, which caused extensive scale loss and open sores on the skin. The smallest fish may have had internal wounds that were not registered in this study. These results can be used in fisheries management to estimate the mortality of multi‐species gillnet fishing to sea trout populations in relation to management actions.