The leading hemisphere of Saturn’s synchronous moon Iapetus is covered by a low-albedo material, contrasting with its bright trailing hemisphere. This dichotomy is also apparent in radar and microwave radiometry observations, which are sensitive to the properties of the near subsurface. To better understand the regional properties of Iapetus and their variations with depth, we assemble the microwave spectra of its leading and trailing hemispheres. Pre-existing data are combined with new millimetric and centimetric observations acquired with the IRAM 30-meter dish, IRAM NOEMA interferometer, and VLA interferometer. These data, interpreted with the help of a model with vertically uniform thermal properties, reveal complex variations in structure and/or composition with depth on the leading side. Meanwhile, the trailing side emissivity is found to be especially low at all observed frequencies, indicating efficient scattering processes on subsurface structures, as observed on Saturn’s other icy moons. We also report the first observations of Saturn’s retrograde moon Phoebe at these frequencies, which has an emissivity higher than that of the trailing hemisphere of Iapetus and similar to its dark leading side, consistent with the theory that Phoebe is the source of the dark material on Iapetus. •The microwave spectra of the Iapetus leading and trailing sides have been assembled.•Radiotelescope observations of Iapetus with VLA, NIKA2/30 m, and NOEMA are described.•The trailing side shows low emissivity, similar to Saturn’s other icy moons.•The leading side spectral slopes indicate vertical composition/structure variations.•VLA observations of Phoebe show emissivities similar to that of Iapetus leading side.