Non-Newtonian fluids flow generated by “cilia” are critical in medicine and bio-medical engineering. Such investigations are created by the back-and-forth movement of a microscopic hair-like structure connected to the walls, which causes a metachronal wave to form and drive biological fluids. Motivated by a wide range of biological applications, this study aims to explain the incompressible flow of Ellis fluid caused by the propagation of an infinite metachronal wave train traveling along channel walls owing to constantly beating cilia. The problem is simplified by low Reynolds number and long wavelength assumption. The mathematical model is solved with the aid of symbolic computational software Mathematica 13 version. The consequences of emerging parameters are then shown in graphical form and discussed comprehensively. From the study, it is worth mentioning that velocity declines with increasing material constants. Temperature distribution is also improved in the core sector of the channel and reduced at the walls. It is predicted that this approach will make an essential contribution to the progress and enhancement of various types of drug delivery systems in the biomedical industry and biomechanics.