Mercury (Hg) accumulation capacity was assessed in three plant species (Axonopus compressus, Erato polymnioides, and Miconia zamorensis) that grow on soils polluted by artisanal small-scale gold mines in the Ecuadorian rainforest. Individuals of three species were collected at two sampling zones: i) an intensive zone (IZ, 4.8 mg Hg kg−1 of soil) where gold extraction continues to occur, and ii) a natural zone (NZ, 0.19 mg Hg kg−1 of soil). In addition, the percentage of arbuscular mycorrhizal fungi (AMF) colonization was determined in plant roots and seven fungal morphotypes isolated from rhizospheric soil. Results suggest a facilitation role of native and pollution adapted AMF on Hg phytoaccumulation. E.g., E. polymnioides increased Hg accumulation when growing with greater AMF colonization. We concluded that E. polymnioides is a good candidate for the design of microbe-assisted strategies for Hg remediation at gold mining areas. The consortia between E. polymnioides and the AMF isolated in this study could be instrumental to get a deeper understanding of the AMF role in Hg phytoaccumulation. •Hg accumulation capacity was studied in three plant species.•Hg in acid soil studied is higher than the Ecuadorian threshold (0.1 mg kg−1).•Concentrations of Hg in roots and leaves were higher than in stems.•All plants showed arbuscular mycorrhizal fungi colonization in their roots.•Erato polymnioides showed high potential as an Hg hyperaccumulator.