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  • Dynamic Data-Independent Ac...
    Heil, Lilian R.; Remes, Philip M.; Canterbury, Jesse D.; Yip, Ping; Barshop, William D.; Wu, Christine C.; MacCoss, Michael J.

    Analytical chemistry, 08/2023, Letnik: 95, Številka: 32
    Journal Article

    Data-independent acquisition (DIA) mass spectrometry has grown in popularity in recent years, because of the reproducibility and quantitative rigor of a systematic tandem mass spectrometry (MS/MS) sampling method. However, traditional DIA methods may spend valuable instrument time acquiring MS/MS spectra with no usable information in them, affecting sensitivity and quantitative performance. We developed a DIA strategy that dynamically adjusts the MS/MS windows during the chromatographic separation. The method focuses MS/MS acquisition on the most relevant mass range at each point in timeincreasing the quantitative sensitivity by increasing the time spent on each DIA window. We demonstrate an improved lower limit of quantification, on average, without sacrificing the number of peptides detected.