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  • Diagnostic kit for rice bli...
    Eom, Joon-Seob; Luo, Dangping; Atienza-Grande, Genelou; Yang, Jungil; Ji, Chonghui; Thi Luu, Van; Huguet-Tapia, José C; Char, Si Nian; Liu, Bo; Nguyen, Hanna; Schmidt, Sarah Maria; Szurek, Boris; Vera Cruz, Casiana; White, Frank F; Oliva, Ricardo; Yang, Bing; Frommer, Wolf B

    Nature biotechnology, 11/2019, Letnik: 37, Številka: 11
    Journal Article

    Blight-resistant rice lines are the most effective solution for bacterial blight, caused by Xanthomonas oryzae pv. oryzae (Xoo). Key resistance mechanisms involve SWEET genes as susceptibility factors. Bacterial transcription activator-like (TAL) effectors bind to effector-binding elements (EBEs) in SWEET gene promoters and induce SWEET genes. EBE variants that cannot be recognized by TAL effectors abrogate induction, causing resistance. Here we describe a diagnostic kit to enable analysis of bacterial blight in the field and identification of suitable resistant lines. Specifically, we include a SWEET promoter database, RT-PCR primers for detecting SWEET induction, engineered reporter rice lines to visualize SWEET protein accumulation and knock-out rice lines to identify virulence mechanisms in bacterial isolates. We also developed CRISPR-Cas9 genome-edited Kitaake rice to evaluate the efficacy of EBE mutations in resistance, software to predict the optimal resistance gene set for a specific geographic region, and two resistant 'mega' rice lines that will empower farmers to plant lines that are most likely to resist rice blight.