•Data on plastic debris on stomach contents of top fish predators are reported.•32.4 % of bluefin tuna content micro-, meso- and macro-plastic.•Plastics in bluefin tuna represents a concern for this ...“endangered” species (IUCN Red List).•Results may represent a warning signal for the potential effects on human health.
This study focuses, for the first time, on the presence of plastic debris in the stomach contents of large pelagic fish (Xiphias gladius, Thunnus thynnus and Thunnus alalunga) caught in the Mediterranean Sea between 2012 and 2013. Results highlighted the ingestion of plastics in the 18.2% of samples. The plastics ingested were microplastics (<5mm), mesoplastics (5–25mm) and macroplastics (>25mm).
These preliminary results represent an important initial phase in exploring two main ecotoxicological aspects: (a) the assessment of the presence and impact of plastic debris on these large pelagic fish, and (b) the potential effects related to the transfer of contaminants on human health.
Nuclear organization has been implicated in regulating gene activity. Recently, large developmentally regulated regions of the genome dynamically associated with the nuclear lamina have been ...identified. However, little is known about how these lamina-associated domains (LADs) are directed to the nuclear lamina. We use our tagged chromosomal insertion site system to identify small sequences from borders of fibroblast-specific variable LADs that are sufficient to target these ectopic sites to the nuclear periphery. We identify YY1 (Ying-Yang1) binding sites as enriched in relocating sequences. Knockdown of YY1 or lamin A/C, but not lamin A, led to a loss of lamina association. In addition, targeted recruitment of YY1 proteins facilitated ectopic LAD formation dependent on histone H3 lysine 27 trimethylation and histone H3 lysine di- and trimethylation. Our results also reveal that endogenous loci appear to be dependent on lamin A/C, YY1, H3K27me3, and H3K9me2/3 for maintenance of lamina-proximal positioning.
The Mediterranean Sea has been described as one of the most affected areas by marine litter in the world. Although effects on organisms from marine plastic litter ingestion have been investigated in ...several oceanic areas, there is still a lack of information from the Mediterranean Sea. The main objectives of this paper are to review current knowledge on the impact of marine litter on Mediterranean biodiversity, to define selection criteria for choosing marine organisms suitable for use as bioindicator species, and to propose a methodological approach to assessing the harm related to marine litter ingestion in several Mediterranean habitats and sub-regions. A new integrated monitoring tool that would provide the information necessary to design and implement future mitigation actions in the Mediterranean basin is proposed.
According to bibliographic research and statistical analysis on current knowledge of marine litter ingestion, the area of the Mediterranean most studied, in terms of number of species and papers in the Mediterranean Sea is the western sub-area as well as demersal (32.9%) and pelagic (27.7%) amongst habitats.
Applying ecological and biological criteria to the most threatened species obtained by statistical analysis, bioindicator species for different habitats and monitoring scale were selected. A threefold approach, simultaneously measuring the presence and effects of plastic, can provide the actual harm and sub-lethal effects to organisms caused by marine litter ingestion. The research revealed gaps in knowledge, and this paper suggests measures to close the gap. This and the selection of appropriate bioindicator species would represent a step forward for marine litter risk assessment, and the implementation of future actions and mitigation measures for specific Mediterranean areas, habitats and species affected by marine litter ingestion.
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•Marine litter ingestion represents a serious harm to Mediterranean biodiversity.•A bibliographic research and statistics identified the most affected habitat/species by marine litter ingestion in the Med.•The identification of suitable bioindicators is necessary to address the effects of marine litter on marine fauna and habitat.•To assess the harm by marine litter ingestion is necessary to quantify its presence and ecotoxicological effects.
Selection of suitable bioindicators of marine litter ingestion and the simultaneous quantification of its presence and ecotoxicological effects is recommended in order to monitor the impact on Mediterranean fauna and habitats.
Plastic pollution is increasing dramatically worldwide, causing adverse effects on a wide variety of marine organisms at all trophic levels. As predators, sharks play a key role in marine ecosystems ...and they could especially be threatened by the ingestion of microplastics. This study contributes to expand the existing data on the MPs ingestion by a Mediterranean elasmobranch species, Scyliorhinus canicula, adding new information on the potential impact that this class of contaminants can have on the metabolism of this ecologically relevant species. The present research is aimed: i) to assess if the ingestion of MPs in S. canicula is related to sex, size and depth of catch; ii) to evaluate the effect of MPs on fish body condition; iii) to evaluate if the ingested MPs influence the amino acid and fatty acid composition of eye and liver.
A total of 61 specimens of S. canicula were analysed. Forty-nine individuals (80.3 %) had ingested plastic items. Totally, 147 plastic elements were found, mainly belonging to small MPs (49 %), and large MPs (46 %), mostly represented by fibers (84 %). The predominant colour was black. No differences were found between sex and size. A difference in the number of items/specimens related to the deep, highest between 50 and 100 m (4.4), while the lowest between 101 and 500 m (2.1) was found. The condition factor (Kn) value was equal to 1.00 highlighting the wellness of the fish. Arginine (20.1 %), Glutamate (17.4), Phenylalanine (15.7 %), Proline (15.6 %) and were the most abundant amino acids in the eyes of S. canicula. The relative fatty acid composition of the livers was dominated by fatty acids SA (30.2 %) (SFA), CA (29.9 %) (SFA) and OA (22.4 %) (MUFA). This paper reports a study on the relationship between amino acids and fatty acids composition and ingested MPs, highlighting that no significant effects were found.
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•MPs were found in Scyliorhinus canicula specimens from the South of Sicily.•The most of them were black fibers.•No relationship between amino acids and fatty acids levels and ingested MPs were found.
Anthropogenic microparticles (AMs) were found for the first time in specimens of Trematomus bernacchii collected in 1998 in the Ross Sea (Antarctica) and stored in the Antarctic Environmental ...Specimen Bank. Most of the identified AMs were fibers of natural and synthetic origin. The natural AMs were cellulosic, the synthetic ones were polyester, polypropylene, polypropylene/polyester, and cellulose acetate. The presence of dyes in the natural AMs indicates their anthropogenic origin. Five industrial dyes were identified by Raman spectroscopy with Indigo occurring in most of them (55%). Our research not only adds further data to the ongoing knowledge of pollution levels in the Antarctic ecosystem, it provides an interesting snapshot of the past, highlighting that microplastics and anthropogenic fiber pollution had already entered the Antarctic marine food web at the end of the '90 s. These findings therefore establish the foundations for understand the changes in marine litter pollution over time.
Although each Mendelian Disorder of the Epigenetic Machinery (MDEM) has a different causative gene, there are shared disease manifestations. We hypothesize that this phenotypic convergence is a ...consequence of shared epigenetic alterations. To identify such shared alterations, we interrogate chromatin (ATAC-seq) and expression (RNA-seq) states in B cells from three MDEM mouse models (Kabuki KS type 1 and 2 and Rubinstein-Taybi type 1 RT1 syndromes). We develop a new approach for the overlap analysis and find extensive overlap primarily localized in gene promoters. We show that disruption of chromatin accessibility at promoters often disrupts downstream gene expression, and identify 587 loci and 264 genes with shared disruption across all three MDEMs. Subtle expression alterations of multiple, IgA-relevant genes, collectively contribute to IgA deficiency in KS1 and RT1, but not in KS2. We propose that the joint study of MDEMs offers a principled approach for systematically mapping functional epigenetic variation in mammals.
The Strait of Sicily was recognized internationally as an "Ecologically or Biologically Significant Area" by the Contracting Parties of the Convention on Biological Diversity in 2014. However, basic ...aspects of its fish diversity are still unknown and most of the information comes from traditional trawl surveys. This paper provides the first detailed description, using a Remotely Operated Vehicle (ROV), of the composition and depth distribution of the demersal fish assemblages found on banks of the Strait of Sicily and the related habitat complexity from 35 to 240 m depth. A total of 24 families and 52 fish species were recorded and depth was consistently associated with a significant proportion of the variation of the fish assemblage. The highest species richness was observed at the shallowest depth layer (0-50 m) and significantly decreased, remaining almost constant, in deeper layers. Similarly the highest abundance was recorded at 0-50 m, where C. julis represented the most abundant species, and decreased progressively throughout the whole depth gradient. Although the factor habitat complexity explained only a small proportion of the fish assemblage variation, significant differences among different degrees of habitat complexity were observed, together with a general positive trend for species richness and abundance with increasing habitat complexity. The ROV also allowed us to observe some rare or poorly known fish species such as Scorpaenodes arenai, Hyporthodus haifensis, Myliobatis aquila, Gadella maraldi, Epinephelus caninus and Lappanella fasciata. These findings show that banks serve as reservoirs for fish abundance and biodiversity and that immediate environmental conservation and management actions represent a priority not only for Italy but also for other countries which share the same area.
The Mediterranean Sea is greatly affected by marine litter. In this area, research on the impact of plastic debris (including microplastics) on biota, particularly large filter-feeding species such ...as the fin whale (Balaenoptera physalus), is still in its infancy. We investigated the possible overlap between microplastic, mesoplastic and macrolitter accumulation areas and the fin whale feeding grounds in in a pelagic Specially Protected Area of Mediterranean Importance (SPAMI): the Pelagos Sanctuary. Models of ocean circulation and fin whale potential habitat were merged to compare marine litter accumulation with the presence of whales. Additionally, field data on microplastics, mesoplastics and macrolitter abundance and cetacean presence were simultaneously collected. The resulting data were compared, as a multi-layer, with the simulated distribution of plastic concentration and the whale habitat model. These data showed a high occurrence of microplastics (mean: 0.082 items/m2, STD ± 0.079 items/m2) spatial distribution agreed with our modelling results. Areas with high microplastic density significantly overlapped with areas of high macroplastic density. The most abundant polymer detected in all the sampling sites was polyethylene (PE), suggesting fragmentation of larger packaging items as the primary source. To our knowledge, this is the first study in the Pelagos Sanctuary in which the simulated microplastic distribution has been confirmed by field observations. The overlap between the fin whale feeding habitat and the microplastic hot spots is an important contribution for risk assessment of fin whale exposure to microplastics.
Introduction
Shallow hydrothermal vents are considered natural laboratories to study the effects of acidification on biota, due to the consistent CO
2
emissions with a consequent decrease in the ...local pH.
Methods
Here the microbial communities of water and sediment samples from Levante Bay (Vulcano Island) with different pH and redox conditions were explored by Next Generation Sequencing techniques. The taxonomic structure was elucidated and compared with previous studies from the same area in the last decades.
Results and discussion
The results revealed substantial shifts in the taxonomic structure of both bacterial and archaeal communities, with special relevance in the sediment samples, where the effects of external parameters probably act for a long time. The study demonstrates that microbial communities could be used as indicators of acidification processes, by shaping the entire biogeochemical balance of the ecosystem in response to stress factors. The study contributes to understanding how much these communities can tell us about future changes in marine ecosystems.
The length-weight relationships and the regressions between otolith size (length and width) and fish length of some mesopelagic and bathypelagic fishes living in the central Mediterranean Sea were ...provided. Images and morphological description of otoliths (sagittae) from 16 species belonging to the families of Gonostomatidae (1), Microstomatidae (2), Myctophidae (8), Phosichthyidae (2), Sternoptychidae (2) and Stomiidae (1) were given. The length-weight relationship showed an isometric growth in 13 species. No differences between right and left otolith sizes were detected by t-test, so a single linear regression was plotted against standard length (SL) for otolith length (OL) and otolith width (OW). Data fitted well to the regression model for both OL and OW to SL, for each species (R2>0.8). These relationships offer a helpful tool in feeding studies and also provide support to palaeontologists in their research on fish fossils.
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