Wolbachia Hertig, 1936 is an intracellular bacterial symbiont colonizing many arthropods. Of the studies done on the bacteria present in the superfamily Gerroidea Leach, 1815, no report of Wolbachia ...infection had yet been made. Thus, we checked the presence of Wolbachia in six Gerroidea species which colonize tropical aquatic environments by PCR using wsp primer set before sequencing and phylogenetic analyses. Insects were collected in the marine fringe of mangroves, in river estuaries, in swampy mangroves, and in ponds from Guadeloupe islands (Caribbean). Two new strains of Wolbachia were detected in these Gerroidea. They were named wLfran and wRmang. The wsp sequences suggest that the strains belong to the already described E supergroup or similar. wLfran is present in Limnogonus franciscanus Stål, 1859 and Rheumatobates trinitatis (China, 1943) while wRmang appears to be present exclusively in R. mangrovensis (China, 1943). Three other species were analysed, but did not appear to be infected: Brachymetra albinerva (Amyot & Serville, 1843), Halobates micans Eschscheltz, 1822, and Microvelia pulchella Westwood, 1834. The results presented here highlight for the first time the presence of new intracellular Wolbachia strains in Gerroidea colonising tropical aquatic environments like mangrove habitats from inlands to sea shore.
This paper introduces a real-time water quality dataset of five ponds for fish farming obtained through an IoT framework for monitoring the aquatic environmental conditions. It utilizes sensors and ...an Arduino microcontroller to collect data on pH, temperature, and turbidity in pond water in Jamalpur District, Bangladesh. The data is stored in an IoT cloud platform named ThingSpeak and analyzed using 10 machine learning algorithms. The dataset consists of 4 columns and 40,280 rows, where pH, temperature, turbidity, and fish are recorded. Fish represents the target variable, while the others serve as independent variables. Within the dataset, there are 11 distinct fish categories including sing, silver carp, Katla, prawn, karpio, shrimp, rui, pangas, tilapia, magur, and koi. Results showed that only three ponds are suitable for fish farming among five ponds and the Random Forest algorithm performs the best. The study also includes details of the IoT system's hardware. This dataset will be useful for researchers and fish farmers to predict fish survival.
This book celebrates the fiftieth anniversary of publication of one of the landmarks of the modern ecological thought: the "Homage to Santa Rosalia or why are there so many kinds of animals" by ...George Evelyn Hutchinson.
Gametogenesis drives the maturation of germ cell precursors into functional gametes, facilitated by interactions with the niche environment. However, the molecular mechanisms, especially in ...invertebrates, remain incompletely understood. In this study, the gonadal microenvironment and gametogenic processes in the Pacific oyster, a model for diffuse gonadal organization and periodic gametogenesis, are investigated. We combine single-nucleus RNA-seq and bulk RNA-seq to analyze gonadal microenvironments in oysters. Twenty-three male and nineteen female gonadal cell clusters are identified, revealing four male and three female germ cell types, alongside follicular cells in females and Sertoli/Leydig cells in males. The NOTCH and BMP (bone morphogenetic protein) signaling pathways play a significant role in the male germline niche, suggesting similarities with mammalian germ cell microenvironment. This study offers valuable insights into germ cell developmental transitions and microenvironmental characteristics.
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•Single-nucleus sequencing provides insights into the cell types in the oyster gonad•Diverse germ cells identified, revealing oyster gametogenesis nuances•NRG, VISFATIN, and SEMA6 pathways aid niche-to-germ communication•NOTCH and BMP pathways play vital roles in male germline niche
Wildlife reproduction; Developmental biology; Aquatic biology; Transcriptomics
A global map of saltmarshes Mcowen, Chris J; Weatherdon, Lauren V; Bochove, Jan-Willem Van ...
Biodiversity Data Journal,
03/2017, Volume:
5, Issue:
5
Journal Article
Peer reviewed
Open access
Saltmarshes are extremely valuable but often overlooked ecosystems, contributing to livelihoods locally and globally through the associated ecosystem services they provide, including fish production, ...carbon storage and coastal protection. Despite their importance, knowledge of the current spatial distribution (occurrence and extent) of saltmarshes is incomplete. In light of increasing anthropogenic and environmental pressures on coastal ecosystems, global data on the occurrence and extent of saltmarshes are needed to draw attention to these critical ecosystems and to the benefits they generate for people. Such data can support resource management, strengthen decision-making and facilitate tracking of progress towards global conservation targets set by multilateral environmental agreements, such as the Aichi Biodiversity Targets of the United Nations' (UN's) Strategic Plan for Biodiversity 2011-2020, the Sustainable Development Goals of the UN's 2030 Agenda for Sustainable Development and the Ramsar Convention.
Here, we present the most complete dataset on saltmarsh occurrence and extent at the global scale. This dataset collates 350,985 individual occurrences of saltmarshes and presents the first global estimate of their known extent. The dataset captures locational and contextual data for saltmarsh in 99 countries worldwide. A total of 5,495,089 hectares of mapped saltmarsh across 43 countries and territories are represented in a Geographic Information Systems polygon shapefile. This estimate is at the relatively low end of previous estimates (2.2-40 Mha), however, we took the conservative approach in the mapping exercise and there are notable areas in Canada, Northern Russia, South America and Africa where saltmarshes are known to occur that require additional spatial data. Nevertheless, the most extensive saltmarsh worldwide are found outside the tropics, notably including the low-lying, ice-free coasts, bays and estuaries of the North Atlantic which are well represented in our global polygon dataset. Therefore, despite the gaps, we believe that, while incomplete, our global polygon data cover many of the important areas in Europe, the USA and Australia.
Although Brazil is considered a megadiverse country, its rich freshwater biodiversity is still poorly known. A general overview of to-date knowledge on Protozoa, Rotifera, Cladocera, and Copepoda ...species and distribution in Brazilian Hydrographic Regions is presented here, based on literature data since the 1890s. Ecological studies provided most of the occurrence records. The results show high richness for all studied biological groups and unequal distribution of the occurrence records, which are substantially influenced by research groups’ location. The data also revealed that Brazilian zooplankton biodiversity still needs to be better studied, taxonomically, although from the beginning of the last century until 1980 these kinds of studies were predominant.
This is the first critical discussion on Diel Vertical Migration of zooplankton in oceans and lakes in 100 years of research. The focus is on photo-response experiments that revealed the ...physiological fundament unifying migration behavior in both biotypes.
Marine dissolved organic matter (DOM) constitutes a major carbon pool in the global carbon cycle. Characterization of its chemical composition will improve our understanding of its role in global ...biogeochemical cycles. Currently, solid phase extraction (SPE) followed by Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) analysis has become a powerful approach to characterize the molecular composition of DOM. However, some components in marine DOM, such as highly oxygenated tannin-like molecules, were lost during the SPE process. In this study, a sequential combination of co-precipitation and SPE procedure was proposed to improve the yield of marine DOM extraction. Ferric hydroxide was used as the co-precipitation agent to separate marine DOM, and SPE was carried out for the extraction of DOM from dissolved and precipitate fractions. The total yield in total organic carbon (TOC) and the number of assigned molecules of SPE-DOM increased by 25% and 51%, respectively, compared with those by direct SPE process. The combined process has good selectivity on tannin-like compounds. The result is instructive for the understanding of DOM molecular composition and potential for a routine method for DOM extraction from environmental water samples, especially for marine DOM containing a small amount of tannin-like compounds.
Oyster reefs are hotspots of denitrification mediated removal of dissolved nitrogen (N), however, information on their denitrifier microbiota is scarce. Furthermore, in oyster aquaculture, triploids ...are often preferred over diploids, yet again, microbiome differences between oyster ploidies are unknown. To address these knowledge gaps, farmed diploid and triploid oysters were collected over an annual growth cycle and analyzed using shotgun metagenomics and quantitative microbial elemental cycling (QMEC) techniques. Regardless of ploidy, Psychrobacter genus was abundant, with positive correlations found for genes of central metabolism, DNA metabolism, and carbohydrate metabolism. MAGs (metagenome-assembled genomes) yielded multiple Psychrobacter genomes harboring norB, narH, narI, and nirK denitrification genes, indicating their functional relevance within the eastern oysters. QMEC analysis indicated the predominance of carbon (C) and nitrogen (N) cycling genes, with no discernable patterns between ploidies. Among the N-cycling genes, the nosZII clade was overrepresented, suggesting its role in the eastern oyster’s N removal processes.
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•Psychrobacter genus predominated in farmed diploid and triploid eastern oysters•Reconstructed MAGs of Psychrobacter spp. contained several denitrification genes•QMEC analysis indicated predominance of carbon (C) and nitrogen (N) cycling genes•The nosZII denitrifier clade was overrepresented regardless of ploidy and seasons
Aquatic biology; Aquatic science; Genomics; Invertebrate aquaculture; Microbiology; Microbiome; Zoology.
Alpine lakes play pivotal roles in plateau hydrological processes but are highly sensitive to climate change, yet we lack comprehensive knowledge of their multitrophic biodiversity patterns. Here, we ...compared the biodiversity characteristics of diverse taxonomic groups across water depths and in surface sediments from a freshwater lake and a hypersaline lake on the northwestern Tibetan Plateau. Using multi-marker environmental DNA metabarcoding, we detected 134 cyanobacteria, 443 diatom, 1,519 invertebrate, and 28 vertebrate taxa. Each group had a substantially different community composition in the two lakes, and differences were also found between water and sediments within each lake. Cooccurrence network analysis revealed higher network complexity, lower modularity, and fewer negative cohesions in the hypersaline lake, suggesting that high salinity may destabilize ecological networks. Our results provide the first holistic view of Tibetan lake biodiversity under contrasting salinity levels and reveal structural differences in the ecological networks that may impact ecosystem resilience.
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•eDNA metabarcoding revealed the multigroup biodiversity of alpine lakes•Freshwater and hypersaline lakes showed distinct community compositions•Water and sediment biota differed significantly in each lake•The hypersaline lake may have less stable ecological networks
Ecology; Molecular biology; Aquatic biology
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