Introduction: The presence of fibrillatory waves (f-waves) is important in the diagnosis of atrial fibrillation (AF), which has motivated the development of methods for f-wave extraction. We propose ...a novel approach to benchmarking methods designed for single-lead ECG analysis, building on the hypothesis that better-performing AF classification using features computed from the extracted f-waves implies better-performing extraction. The approach is well-suited for processing large Holter data sets annotated with respect to the presence of AF. Methods: Three data sets with a total of 300 two- or three-lead Holter recordings, performed in the USA, Israel and Japan, were used as well as a simulated single-lead data set. Four existing extraction methods based on either average beat subtraction or principal component analysis (PCA) were evaluated. A random forest classifier was used for window-based AF classification. Performance was measured by the area under the receiver operating characteristic (AUROC). Results: The best performance was found for PCA-based extraction, resulting in AUROCs in the ranges 0.77--0.83, 0.62--0.78, and 0.87--0.89 for the data sets from USA, Israel, and Japan, respectively, when analyzed across leads; the AUROC of the simulated single-lead, noisy data set was 0.98. Conclusions: This study provides a novel approach to evaluating the performance of f-wave extraction methods, offering the advantage of not using ground truth f-waves for evaluation, thus being able to leverage real data sets for evaluation. The code is open source (following publication).
Atrial fibrillation (AF) is a common atrial arrhythmia that impairs quality of life and causes embolic stroke, heart failure and other complications. Recent advancements in machine learning (ML) and ...deep learning (DL) have shown potential for enhancing diagnostic accuracy. It is essential for DL models to be robust and generalizable across variations in ethnicity, age, sex, and other factors. Although a number of ECG database have been made available to the research community, none includes a Japanese population sample. Saitama Heart Database Atrial Fibrillation (SHDB-AF) is a novel open-sourced Holter ECG database from Japan, containing data from 100 unique patients with paroxysmal AF. Each record in SHDB-AF is 24 hours long and sampled at 200 Hz, totaling 24 million seconds of ECG data.
Introduction: Atrial fibrillation (AF) is the most prevalent heart arrhythmia. AF manifests on the electrocar-diogram (ECG) though irregular beat-to-beat time interval variation, the absence of ...P-wave and the presence of fibrillatory waves (f-wave). We hypothesize that a deep learning (DL) approach trained on the raw ECG will enable robust detection of AF events and the estimation of the AF burden (AFB). We further hypothesize that the performance reached leveraging the raw ECG will be superior to previously developed methods using the beat-to-beat interval variation time series. Consequently, we develop a new DL algorithm, denoted ArNet-ECG, to robustly detect AF events and estimate the AFB from the raw ECG and bench-mark this algorithms against previous work. Methods: A dataset including 2,247 adult patients and totaling over 53,753 hours of continuous ECG from the University of Virginia (UVAF) was used. Results: ArNet-ECG obtained an F 1 of 0.96 and ArNet2 obtained an F 1 0.94. Discussion and conclusion: ArNet-ECG outperformed ArNet2 thus demonstrating that using the raw ECG provides added performance over the beat-to-beat interval time series. The main reason found for explaining the higher performance of ArNet-ECG was its high performance on atrial flutter examples versus poor performance on these recordings for ArNet2.
Introduction: Atrial fibrillation (AF) is the most common heart arrhythmia, characterized by the presence of fibrillatory waves (f-waves) in the ECG. We introduce a voting scheme to estimate the ...dominant atrial frequency (DAF) of f-waves. Methods: We analysed a subset of Holter recordings obtained from the University of Virginia AF Database. 100 Holter recordings with manually annotated AF events, resulting in a total 363 AF events lasting more than 1 min. The f-waves were extracted using four different template subtraction (TS) algorithms and the DAF was estimated from the first 1-min window of each AF event. A random forest classifier was used. We hypothesized that better extraction of the f-wave meant better AF/non-AF classification using the DAF as the single input feature of the RF model. Results: Performance on the test set, expressed in terms of AF/non-AF classification, was the best when the DAF was computed computed the three best-performing extraction methods. Using these three algorithms in a voting scheme, the classifier obtained AUC=0.60 and the DAFs were mostly spread around 6 Hz, 5.66 (4.83-7.47). Conclusions: This study has two novel contributions: (1) a method for assessing the performance of f-wave extraction algorithms, and (2) a voting scheme for improved DAF estimation.
In muscular dystrophies (MD) the loss of muscle and its ability to function are associated with fibrosis. We evaluated the efficacy of halofuginone in reducing fibrosis in the dy(2J)/dy(2J) mouse ...model of congenital MD. Mice were injected intraperitoneally with 5 microg of halofuginone 3 times a week for 5 or 15 weeks, starting at the age of 3 weeks. Halofuginone caused a reduction in collagen synthesis in hindlimb muscles. This was associated with reductions in the degenerated area, in cell proliferation, in the number of myofibers with central nuclei, with increased myofiber diameter, and with enhanced motor coordination and balance. Halofuginone caused a reduction in infiltrating fibroblasts that were located close to centrally nucleated myofibers. Our results suggest that halofuginone reduced the deleterious effects of fibrosis, thus improving muscle integrity. Halofuginone meets the criteria for a novel antifibrotic therapy for MD patients.
