Understanding the dynamics of juvenile fish populations is a key component to understanding variation in adult populations, however, juvenile fish are frequently found in a variety of structurally ...complex habitats which are often not easily sampled. The use of baited (BRUV) and unbaited (RUV) remote underwater stereo-video to study juvenile fish populations is uncommon and thus far, no study has directly compared the efficacy of these two methods solely for juvenile fish assemblages.
The macro-tidal Kimberley region in the north-west of Australia is challenging to sample using diver-based methods due to the strong currents and prevalence of saltwater crocodiles (Crocodylus porosus). We sampled 60 Stereo-RUVs and 60 Stereo-BRUVs across four shallow-water (1-6 m) benthic habitats: coral, mangrove, macroalgae, and seagrass, to contrast the effect of the presence or absence of bait, deployment period, in-water visibility and tidally driven water speed on estimates of relative total abundance, species richness, and composition of the juvenile fish assemblage.
No difference was detected in the ability of stereo-BRUV or stereo-RUV to quantify the relative total abundance, species richness, or assemblage composition of juvenile fish. We also found little effect of in-water visibility or tidally driven water speed, likely as a result of stratifying our sampling to slack water periods.
We found that a deployment period of 10 min for Stereo-BRUVs and 15 min for Stereo-RUVs was optimum for sampling the juvenile fish assemblage across all four contrasting habitats. Since no statistical significance was observed between 10 and 15 min, we recommend that Stereo-RUVs deployed for 15 min during tidal slack water conditions are an optimum way to provide consistent results for comparisons of juvenile fish assemblage metrics across the benthic habitats studied within this region.
The controlled video methodologies described here provided an opportunity to access un-sampled juvenile fish habitats and assemblages where traditional diver-based methodologies are impossible. Applying these methods broadly can help to improve our understanding of the status of juvenile fish and infer the reproductive success and viability of their populations across a range of habitat and environments.
•Stereo-RUVS are effective in comparing juvenile fish assemblages across a range of macrotidal habitats.•Short, 15 min stereo-RUVS deployments provide reliable and consistent results.•A novel method which can be used to sample juvenile fish in habitats where more traditional methods are not possible.
Declining coral cover and loss of structural complexity are widely reported on today's coral reefs. While coral loss frequently triggers changes in coral reef fish assemblage structure, the ...ecosystem‐scale consequences of these changes are poorly known.
Here we evaluate how four metrics of energy flow and storage that underscore a critical coral reef function, consumer biomass production, respond to severe coral loss on a coral reef in the northern Great Barrier Reef, Australia.
We compared fish and benthic surveys at Lizard Island from 2003 to 2004 with surveys in 2018 using an individual‐level modelling approach that integrates growth and mortality coefficients to estimate community‐level standing biomass, productivity, consumed biomass and turnover.
In the study period, coral cover declined by 72%–83% in forereef zones while turf cover increased by 18%–100% across all zones. Reef fish assemblages, in turn, responded with a 71% increase in standing biomass, 41% in productivity and 37% in consumed biomass, mainly driven by nominally‐herbivorous fishes (Labridae—Scarini, Acanthuridae and Siganidae). By contrast, biomass turnover rates declined by 19%.
Our findings suggest that coral loss can drive energetic shifts on coral reefs, leading to more productive, but slower paced reef fish assemblages. Although the observed build‐up of biomass may appear positive, the decreased turnover rates indicate that the system is unable to maintain biomass replacement levels. This suggests that the enhanced productivity that accompanied coral loss may be driven by storage effects from the somatic growth of individuals already present, questioning the temporal stability of these changes to coral reef ecosystem functioning.
A free Plain Language Summary can be found within the Supporting Information of this article.
A free Plain Language Summary can be found within the Supporting Information of this article.
Identifying and protecting nursery habitats for species is a key conservation strategy for the long-term sustainability of populations. In tropical ecosystems, macroalgal habitats have recently been ...identified as nurseries for fish of commercial and conservation significance. Here, we explore how local-scale variations in seaweed habitat quality interact with large-scale climatic conditions (Southern Oscillation Index, SOI) to influence the recruitment of three tropical fish species (Lethrinus spp.), often targeted by fishers. New fish recruits and juveniles of all species were almost exclusively found in macroalgal nursery habitats, while adults of two of these species were predominantly found on adjacent coral reefs. Annual supply rates of new recruits were found to be strongly correlated to variations in the SOI, with La Nina conditions associated with higher recruitment. However, local rates of recruitment were generally poor predictors of older juvenile abundance. Instead, local juvenile abundance was more closely related to structural characteristics of macroalgae nursery habitat quality (density, canopy height, canopy cover) and/or predator biomass, at the time of survey, with species-specific habitat associations apparent. Given the dynamic nature of fish recruitment supply to the SOI, coupled with the effects of climatic and oceanic processes on the structure of macroalgal patches, these results suggest protection of macroalgal nursery habitats that maintain high canopy density, height and cover is critical to supporting the conservation of fish populations.
Context
In heterogeneous landscapes, local patterns of community structure are a product of the habitat size and condition within a patch interacting with adjacent habitat patches of varying ...composition and quantity. While evidence for local versus landscape factors have been found in terrestrial biomes, support for such multi-scale effects shaping marine ecological communities is equivocal.
Objectives
We investigated whether within-patch habitat condition can override seascape context to explain the community structure of macroalgae-associated reef fishes across a tropical seascape.
Methods
We mapped the distribution and abundance of a diverse family of reef fishes (Labridae) occupying macroalgae meadows within a tropical reef ecosystem, and using best-subsets model selection, investigated the potential for habitat structural connectivity and/or local habitat quality for predicting variations in fish community structure across the seascape.
Results
Local habitat quality (canopy structure, hard habitat complexity) and area of coral-dominated habitat within 500 m of a macroalgal meadow provided the best predictors of fish community structure. However, the specific importance of a given predictor varied with fish life history stage and functional trophic group. Interestingly, macroalgae meadow area was among the least important predictors.
Conclusions
Given the complex interplay between local habitat quality and spatial context effects on fish biodiversity, our study reveals the multi-scale predictors that should be used in spatial conservation and management approaches for tropical fish diversity. Moreover, our findings question the ubiquity of habitat area effects in patchy landscapes, and cautions against a sole reliance on habitat quantity in spatial management.
The ubiquitous coenzyme Q (CoQ) is a powerful antioxidant defence against cellular oxidative damage. In fishes, differences in the isoprenoid length of CoQ and its associated antioxidant efficacy ...have been proposed as an adaptation to different thermal environments. Here, we examine this broad contention by a comparison of the CoQ composition and its redox status in a range of coral reef fishes. Contrary to expectations, most species possessed CoQ8 and their hepatic redox balance was mostly found in the reduced form. These elevated concentrations of the ubiquinol antioxidant are indicative of a high level of protection required against oxidative stress. We propose that, in contrast to the current paradigm, CoQ variation in coral reef fishes is not a generalized adaptation to thermal conditions, but reflects species-specific ecological habits and physiological constraints associated with oxygen demand.
Dredging can have significant impacts on aquatic environments, but the direct effects on fish have not been critically evaluated. Here, a meta‐analysis following a conservative approach is used to ...understand how dredging‐related stressors, including suspended sediment, contaminated sediment, hydraulic entrainment and underwater noise, directly influence the effect size and the response elicited in fish across all aquatic ecosystems and all life‐history stages. This is followed by an in‐depth review summarizing the effects of each dredging‐related stressor on fish. Across all dredging‐related stressors, studies that reported fish mortality had significantly higher effect sizes than those that describe physiological responses, although indicators of dredge impacts should endeavour to detect effects before excessive mortality occurs. Studies examining the effects of contaminated sediment also had significantly higher effect sizes than studies on clean sediment alone or noise, suggesting additive or synergistic impacts from dredging‐related stressors. The early life stages such as eggs and larvae were most likely to suffer lethal impacts, while behavioural effects were more likely to occur in adult catadromous fishes. Both suspended sediment concentration and duration of exposure greatly influenced the type of fish response observed, with both higher concentrations and longer exposure durations associated with fish mortality. The review highlights the need for in situ studies on the effects of dredging on fish which consider the interactive effects of multiple dredging‐related stressors and their impact on sensitive species of ecological and fisheries value. This information will improve the management of dredging projects and ultimately minimize their impacts on fish.
Environmental drivers of seaweed biomass were investigated at Ningaloo, Western Australia, a coral reef ecosystem with negligible anthropogenic influences on seaweeds from fishing, farming, or ...eutrophication. Periodic surveys of benthic macroalgae occupying seaweed-dominated beds within the lagoon at two locations (Coral Bay, Tantabiddi) were made during winter, spring, and late summer over a 26 month period. Canopy-forming Sargassum spp. biomass fluctuated over a seasonal growth–decay cycle, with highest values in the warm summer months (up to 1013 g fresh weight 0.25 m−2 at Coral Bay) and lowest values in winter (down to 155 g fresh weight 0.25 m−2 at Tantabiddi). Conversely, prominent understory seaweed genera Dictyopteris and Lobophora reached peak biomass in winter, when the Sargassum spp. canopy was lowest. Sargassum spp. biomass variation could be attributed largely to time (52%), location (21%), and site (26%), with low variation within individual seaweed beds (1%). Statistical analysis of the influence of five environmental variables (temperature, light, wind-driven upwelling, rainfall, significant wave height) indicated that location and sea temperature (1 month antecedent to biomass) provided the best explanation for Sargassum spp. biomass fluctuations. While sea temperature is a key driver of seaweed temporal dynamics, heterogeneity at the kilometer scale suggests that spatial context is also important. Given the important role of seaweeds in many ecosystem processes, this strong biophysical coupling between Sargassum spp. biomass and sea temperature suggests that thermal climate change will significantly affect coral reef productivity and biodiversity.
Abstract
Biodiversity conservation and management requires surveillance that captures the full spectrum of taxa. Here, we showcase the potential for a portfolio of visual, extractive, and molecular ...methods for detecting previously hidden components of tropical fish biodiversity in an economically and culturally valuable marine site that spans a tropical‐temperate ecotone—the Ningaloo Coast World Heritage Area. With scale and practicality in mind, we demonstrate how environmental DNA (eDNA) methods deployed in a stratified sampling design can yield a more comprehensive monitoring program for species presence than current alternatives (e.g., extractive sampling via anesthetic). eDNA from filtered water samples detected up to six times as many cryptobenthic fish species per site than samples collected with anesthetic, indicating it is a potentially powerful tool for assessing biodiversity of tropical fishes. However, there were also species that were only found when using anesthetic and the contribution of cryptobenthic species to overall diversity of the fish assemblage was unexpectedly low, suggesting not all cryptobenthic fish species have been detected with eDNA. There were also distinct differences in cryptobenthic assemblages both among sites and sample depths (2–3 m) when using eDNA from filtered water, suggesting this technique may be able to identify fine scale spatial differences in cryptobenthic fish assemblage. eDNA collected from water detects the most cryptobenthic species and is therefore an efficient tool for rapidly assessing biodiversity, but extractive techniques may still be required for biological and monitoring studies, and when combined with eDNA sampling provides the most comprehensive assessment of cryptobenthic fishes.
Submerged reef ecosystems can be very diverse and may serve as important refugia for shallow-water conspecifics. This study quantified the benthic and fish communities of two proximate, predominantly ...mesophotic coral ecosystems (MCEs), Glomar Shoal and Rankin Bank, which are geographically isolated from other similar features in the region. Glomar Shoal is identified as a key ecological feature (KEF) in the North West Marine Region of Australia. Multibeam surveys were performed to characterise the seafloor and to derive secondary environmental variables, used to explain patterns in benthic and fish communities. Towed video surveys quantified benthic cover, and stereo baited remote underwater stations were used to survey fish abundance and diversity. Surveys were completed in depths of ~ 20–115 m. The two MCEs exhibited distinct communities; Rankin Bank consistently had higher cover (up to 30×) of benthic taxa across depths, and fish communities that were twice as abundant and 1.5× more diverse than Glomar Shoal. The location of the MCEs, depth and rugosity were most influential in structuring benthic communities. Phototrophic taxa, specifically macroalgae and hard corals, had up to 22 × higher cover at Rankin Bank than at Glomar Shoal and were dominant to 80 m (compared to 60 m at Glomar Shoal), presumably due to greater light penetration (lower turbidity) and lower sand cover at greater depths. The 20% coral cover at Rankin Bank was comparable to that reported for shallow reefs. The cover of sand, hard corals and sponges influenced fish communities, with higher abundance and diversity of fish associated with shallow hard coral habitats. This study demonstrated that the two MCEs were unique within the local context, and when coupled with their geographical isolation and biodiversity, presents compelling support for the additional recognition of Rankin Bank as a KEF.
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