Global climate warming disproportionately affects high-latitude and mountainous terrestrial ecosystems. Warming is accompanied by permafrost thaw, shorter winters, earlier snowmelt, more intense soil ...freeze-thaw cycles, drier summers, and longer fire seasons. These environmental changes in turn impact surface water and groundwater flow regimes, water quality, greenhouse gas emissions, soil stability, vegetation cover, and soil (micro)biological communities. Warming also facilitates agricultural expansion, urban growth, and natural resource development, adding growing anthropogenic pressures to cold regions' landscapes, soil health, and biodiversity. Further advances in the predictive understanding of how cold regions' critical zone processes, functions, and ecosystem services will continue to respond to climate warming and land use changes require multiscale monitoring technologies coupled with integrated observational and modeling tools. We highlight some of the major challenges, knowledge gaps, and opportunities in cold region critical zone research, with an emphasis on subsurface processes and responses in both natural and agricultural ecosystems.
Microbial communities are a critical component of the soil carbon (C) cycle as they are responsible for the decomposition of both organic inputs from plants and of soil organic C. However, there is ...still no consensus about how to explicitly represent their role in terrestrial C cycling. The objective of the study was to determine how the molecular and energetic properties of readily available organic matter affect the metabolic activity of the resident microbial communities in soils. This was achieved by cross-amending six soils, taken from woodland and grassland sites along an urban pressure gradient, with organic matter extracted from the same six soils and measuring heat dissipated due to the increase in microbial metabolic activity. The energetic properties of the organic matter were used to estimate a potential energetic return on investment (ROI) that microbial communities could obtain from the transformation of the organic matter. Specifically, the ROI was calculated as the ratio between the total net energy available (ΔE) and the weighted average standard state Gibbs energies of oxidation half reactions of organic C (ΔG°Cox). ΔE was measured as the heat of combustion using bomb calorimetry. ΔG°Cox was estimated using the average nominal oxidation state of C (NOSC) of the molecular species in the organic matter. The overall metabolic activity of microbial communities was positively related to the potential energetic return on investment but no significant relationship was found with the molecular diversity of organic matter. The temporal differences in metabolism across soils indicate that bacterial communities do not exploit the potential energetic return on investment in the same way: the suburban grassland communities responded more rapidly and the suburban woodland communities more slowly to the organic matter additions than the other communities. The urban gradient did not affect the properties of the molecular or energetic properties of the organic matter nor the response of the microbial communities to the organic matter additions. However, the organic matter from the grassland soils caused soils to dissipate 36.4% more heat than organic matter from the woodland soils. The metabolic response was also more rapid after the addition of grassland organic matter: the time taken for half the heat to be dissipated was 6.4 h after the addition of grassland organic matter and 6.1 h after the addition of woodland organic matter. Overall, our results suggest that microbial communities preferentially use organic matter with a high potential energetic return on investment, i.e. organic molecules that do not require high cost associated with catalysis whilst yielding a high net energetic benefit.
•Potential return on investment obtained from organic matter calculated as ΔE/ΔG°Cox.•Potential return on investment correlated to total microbial activity.•Dynamics of organic matter processing depends on microbial community composition.
Abstract Background and aims Most studies of the relationships between the composition of soil organic matter and plant cover have been carried out at the plant genera level. However, they have ...largely overlooked the potential effects that plant varieties, belonging to the same genus, can have on soil organic matter. Methods We investigated whether plant varieties belonging to different Salix species ( S. dasyclados and S. viminalis) impacted the composition of organic matter using mid-infrared spectroscopy and pyrolysis GC/MS. Top-soils were taken from an 18 year-old long-term field trial where six Salix varieties were grown as short-rotation coppice under two fertilisation regimes. Results Significant differences in the molecular composition and diversity of the soil organic matter were observed in the fertilised plots. The effects were mostly visible at the species level, i.e. the organic matter in soil under S. dasyclados varieties had higher molecular diversity and lignin content than under S. viminalis , potentially due to differences in the amount and composition of their litter inputs. Smaller differences among varieties from the same species were also observed. No significant effects of Salix varieties were observed in the unfertilised plots. The relatively high degree of spatial variability of several soil properties found in these plots may have masked plant variety and/or species effects. Conclusion This study provides evidence that the identity of Salix species or varieties can affect the molecular composition and diversity of soil organic matter. The corresponding traits should be considered in breeding programmes to enhance soil organic C accumulation and persistence.
Abstract An influenza vaccine approach that overcomes the problem of viral sequence diversity and provides long-lived heterosubtypic protection is urgently needed to protect against pandemic ...influenza viruses. Here, to determine if lung-resident effector memory T cells induced by cytomegalovirus (CMV)-vectored vaccines expressing conserved internal influenza antigens could protect against lethal influenza challenge, we immunize Mauritian cynomolgus macaques (MCM) with cynomolgus CMV (CyCMV) vaccines expressing H1N1 1918 influenza M1, NP, and PB1 antigens (CyCMV/Flu), and challenge with heterologous, aerosolized avian H5N1 influenza. All six unvaccinated MCM died by seven days post infection with acute respiratory distress, while 54.5% (6/11) CyCMV/Flu-vaccinated MCM survived. Survival correlates with the magnitude of lung-resident influenza-specific CD4 + T cells prior to challenge. These data demonstrate that CD4 + T cells targeting conserved internal influenza proteins can protect against highly pathogenic heterologous influenza challenge and support further exploration of effector memory T cell-based vaccines for universal influenza vaccine development.
Several retrospective epidemiological studies report that utilization of 3-hydroxy-3-methylglutaryl-CoA reductase (HMGCR) inhibitors called statins at mid-life can reduce the risk of developing ...sporadic Alzheimer's disease (AD) by as much as 70%. Conversely, the administration of these inhibitors in clinically diagnosed subjects with AD confers little or no benefits over time. Here, we investigated the association between AD and HMGCR rs3846662, a polymorphism known to be involved in the regulation of HMGCR exon 13 skipping, in a founder population and in two distinct mixed North American populations of converting mild cognitively impaired (MCI) subjects (Alzheimer's disease Cooperative study (ADCS) and Alzheimer's disease Neuroimaging Initiative (ADNI) cohorts). Targeting more specifically women, the G allele negative (G-) AD subjects exhibit delayed age of onset of AD (P=0.017) and significantly reduced risk of AD (OR: 0.521; P=0.0028), matching the effect size reported by the apolipoprotein E type 2 variant. Stratification for APOE4 in a large sample of MCI patients from the ADCS cohort revealed a significant protective effect of G negative carriers on AD conversion 3 years after MCI diagnosis (odds ratio (OR): 0.554; P=0.041). Conversion rate among APOE4 carriers with the HMGCR's G negative allele was markedly reduced (from 76% to 27%) to levels similar to APOE4 non-carriers (27.14%), which strongly indicate protection. Conversion data from the independent ADNI cohort also showed significantly reduced MCI or AD conversion among APOE4 carriers with the protective A allele (P=0.005). In conclusion, HMGCR rs3846662 acts as a potent genetic modifier for AD risk, age of onset and conversion.
We describe sclerochronological analyses of tadpole codling (Salilota australis) vertebrae as a proxy for the seasonal timing of fishing activities at one Middle Holocene (6500 BP) and three ...Late-Middle Holocene (3500-2500 years BP) archaeological sites located in Seno Otway and in the central zone of the Strait of Magellan, Chile. These data provide an approximation of the population characteristics of the species in the past by estimating the relationship between size and age of the archaeological fish and comparing their growth rate to those of modern specimens captured monthly over one year. The results showed that the size at age was significantly larger in archaeological samples than in the modern reference collection. Our results indicate that fishing activities took place throughout the year at the Late Holocene sites, with a special emphasis on the cold season, while the Middle Holocene site showed a tendency to catch tadpole codling during the warm season.
Bioenergy will be one of the most important renewable energy sources in the conversion from fossil fuels to bio‐based products. Short rotation coppice Salix could be a key player in this conversion ...since Salix has rapid growth, positive energy balance, easy to manage cultivation system with vegetative propagation of plant material and multiple harvests from the same plantation. The aim of the present paper is to provide an overview of the main challenges and key issues in willow genetic improvement toward sustainable biofuel value chains. Primarily based on results from the research project “Optimized Utilization of Salix” (OPTUS), the influence of Salix wood quality on the potential for biofuel use is discussed, followed by issues related to the conversion of Salix biomass into liquid and gaseous transportation fuels. Thereafter, the studies address genotypic influence on soil carbon sequestration in Salix plantations, as well as on soil carbon dynamics and climate change impacts. Finally, the opportunities for plant breeding are discussed using willow as a resource for sustainable biofuel production. Substantial phenotypic and genotypic variation was reported for different wood quality traits important in biological (i.e., enzymatic and anaerobic) and thermochemical conversion processes, which is a prerequisite for plant breeding. Furthermore, different Salix genotypes can affect soil carbon sequestration variably, and life cycle assessment illustrates that these differences can result in different climate mitigation potential depending on genotype. Thus, the potential of Salix plantations for sustainable biomass production and its conversion into biofuels is shown. Large genetic variation in various wood and biomass traits, important for different conversion processes and carbon sequestration, provides opportunities to enhance the sustainability of the production system via plant breeding. This includes new breeding targets in addition to traditional targets for high yield to improve biomass quality and carbon sequestration potential.
Bioenergy will be one of the most important renewable energy sources in the conversion from fossil fuels to bio‐based products. Short‐rotation‐coppice Salix could be a key player in this conversion since Salix has rapid growth, positive energy balance, an easy to manage cultivation system with vegetative propagation of plant material and multiple harvests from the same plantation. The paper provides an overview of the main challenges and key issues in willow genetic improvement towards sustainable biofuel value chains.
Cytomegalovirus infection is the most frequent viral congenital infection, with possible consequences such as deafness, or psychomotor retardation. In 2016, the French High Council of Public Health ...was mandated to update recommendations regarding prevention of cytomegalovirus infection in pregnant women. We summarize a critical appraisal of knowledge and deterministic decision analysis comparing the current no-screening situation to serological screening during pregnancy, and to hygiene promotion.
Screening was defined as systematic serological testing, during the first trimester, with repeated tests as needed, to all pregnant women. Outcomes were: 1) severe sequela: intellectual deficiency with IQ ≤ 50 or hearing impairment < 70 dB or sight impairment (≤ 3/10 at best eye); 2) moderate sequela: any level of intellectual, hearing or sight deficiency; and 3) death or termination of pregnancy. We simulated the one-year course of cytomegalovirus infection in a cohort of 800,000 pregnant women. We developed a deterministic decision model, using best and min-max estimates, extracted from systematic reviews or original studies.
Relevant data were scarce or imprecise. We estimated that 4352 maternal primary infections would result in 1741 foetal infections, and an unknown number of maternal reinfections would result in 1699 foetal infections. There would be 788 cytomegalovirus-related consequences, including 316 foetal deaths or terminations of pregnancy, and 424 moderate and 48 severe sequelae. Screening would result in a 1.66-fold increase of poor outcomes, mostly related to a 2.93-fold increase in deaths and terminations of pregnancy, not compensated by the decrease in severe symptomatic newborns. The promotion of hygiene would result in a 0.75-fold decrease of poor outcomes, related to both a decrease in severe sequelae among symptomatic newborns (RR = 0.75; min-max: 1.00-0.68), and in deaths and terminations of pregnancy (RR = 0.75; min-max: 0.97-0.68).
Prevention of cytomegalovirus infection during pregnancy should promote hygiene; serological screening should not be recommended.
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