Opium poppy (Papaver somniferum L. subsp. somniferum) was likely domesticated in the Western Mediterranean, where its putative wild ancestor is indigenous, and then spread to central and northern ...Europe. While opium poppy seeds are regularly identified in archaeobotanical studies, the absence of morphological criteria to distinguish the seeds of wild and domestic forms prevents the documentation of their respective historical and geographical occurrences and of the process of opium domestication as a whole. To fill this gap and better understand the status of this crop in the Neolithic, we combined seed outline analyses, namely elliptic Fourier transforms, with other morphometric descriptors to describe and identify Papaver setigerum, Papaver somniferum and other Papaver taxa. The combination of all measured parameters gives the most precise predictions for the identification of all seven taxa. We finally provide a case study on a Neolithic assemblage from a pile-dwelling site in Switzerland (Zurich-Parkhaus Opéra, ca. 3170 BC). Our results indicate the presence of mixed populations of domestic and wild seeds belonging to the P. somniferum group, suggesting that the plant was already in the process of domestication at the end of 4th millennium BC. Altogether, these results pave the way to understand the geography and history of the poppy domestication and its spread into Europe.
Teeth in sharks are shed and replaced throughout their lifetime. Morphological dental changes through ontogeny have been identified in several species and have been correlated with shifts in diet and ...the acquisition of sexual maturity. However, these changes were rarely quantified in detail along multiple ontogenetic stages, which makes it difficult to infer the developmental processes responsible for the observed plasticity. In this work, we use micro‐computed tomography and 3D geometric morphometrics to describe and analyze the tooth size and shape diversity across three ontogenetic stages (hatchling, juvenile, and sexually mature) in the large‐spotted catshark Scyliorhinus stellaris (Linnaeus, 1758). We first describe the intra‐individual variation of tooth form for each sex at each ontogenetic stage. We provide a tooth morphospace for palatoquadrate and Meckelian teeth and identify dental features, such as relative size and number of cusps, involved in the range of variation of the observed morphologies. We then use these shape data to draw developmental trajectories between ontogenetic stages and for each tooth position within the jaw to characterize ontogenetic patterns of sexual dimorphism. We highlight the emergence of gynandric heterodonty between the juvenile and mature ontogenetic stages, with mature females having tooth morphologies more similar to juveniles’ than mature males that display regression in the number of accessory cusps. From these data, we speculate on the developmental processes that could account for such developmental plasticity in S. stellaris.
This study uncovers the wide intraspecific diversity of tooth form in the large‐spotted catshark Scyliorhinus stellaris using micro‐computed tomography and 3D geometric morphometrics. We characterize the emergence of sexual dimorphism along ontogenetic stages using sex‐specific ontogenetic trajectories. We discuss the physical and chemical parameters acting on tooth morphogenesis that may generate the described developmental plasticity in elasmobranchs.
The Near East and the Caucasus are commonly regarded as the original domestication centres of
Vitis vinifera
(grapevine), and the region continues to be home to a high diversity of wild and ...cultivated grapevines, particularly within Georgia. The earliest chemical evidence for wine making was recorded in Georgian Neolithic sites (6000–5800
bc
) and grape pips, possibly of the domesticated morphotype, have been reported from several sites of about the same period. We performed geometric morphometric and palaeogenomic investigations of grape pip samples in order to identify the appearance of domesticated grapevine and explore the changes in cultivated diversity in relation to modern varieties. We systematically investigated charred and uncharred grape pip samples from Georgian archaeological sites. Their chronology was thoroughly assessed by direct radiocarbon dating. More than 500 grape pips from 14 sites from the Middle Bronze Age to modern times were selected for geometric morphometric studies. The shapes of the ancient pips were compared to hundreds of modern wild individuals and cultivated varieties. Degraded DNA was isolated from three pips from two sites, converted to Illumina libraries, sequenced at approximately 10,000 single nucleotide polymorphism (SNP) sites, and compared to a large public database of grapevine diversity. The most ancient pip dates from the Middle Bronze Age (1900–1500 cal
bc
) and the domesticated morphotype is identified from ca. 1000
bc
onwards. A great diversity of domesticated shapes was regularly seen in the samples. Most are close to modern cultivars from the Caucasian, southwest Asian and Balkan areas, which suggests that the modern local vine diversity is deeply rooted in early viticulture. DNA was successfully recovered from historic pips and genome-wide analyses found close parental relationships to modern Georgian cultivars.
The ability to document the effects of domestication from archaeological remains of animals and plants is essential for reconstructing the history of one of the most important transitions in human ...prehistory – the shift from hunting and gathering to farming. In mammals, teeth are well preserved in archaeological remains and are known to be taxonomically informative. In this study, we compare three sets of dental morphometric descriptors in wild and domestic pigs (Sus scrofa) – maximum length, size and shape variables from 2D geometric morphometrics – in order to assess which of the three provides the best ability to correctly distinguish current wild and domestic West Palaearctic pigs. For this purpose, we used predictive linear discriminant analysis with cross-validation taking into account potential bias due to heterogeneous sample sizes and important number of predictors. Classification accuracy of wild and domestic status ranged between 77.3 and 93% depending of the tooth and the descriptor analyzed. However, individual posterior probabilities of correct classification were appreciably smaller when using tooth length and centroid size compared to shape variables. Size appeared to be a poor indicator of wild and domestic status, contrary to shape which in addition provides a high degree of confidence in the wild versus domestic predictions. Our results indicate that geometric morphometrics offers an extremely powerful alternative to more traditional biometric approaches of length and width measurements to capture the elusive morphological changes induced by the domestication process in archaeological remains.
► Geometric morphometrics was used to accurately identify wild or domestic Suc scrofa. ► We compare and contrast the accuracy of 3 descriptors to recognize wild/domestic pigs. ► Molar size is an extremely poor indicator of the domestication status in pigs. ► Molar shape provides the best available technique to identify domestic pigs. ► Geometric morphometrics is a powerful alternative to traditional biometric techniques.
During the Ceramic Age (500 BCE–1500 CE), Lesser Antilles rice rats (Tribe Oryzomyini) made up a significant portion of the diet of Caribbean islanders. Archaeological excavations across the ...archipelago resulted to the discovery of large quantities of remains from to these now extinct taxa. It offers a unique opportunity to investigate the past biogeography of this taxon of high cultural and ecological importance. We have studied 1140 first lower molars originating from 40 archaeological sites across eleven islands of the Lesser Antilles archipelago using two-dimensional geometric morphometric approaches to establish spatiotemporal patterns relying on phenotypic variations. This study identified three morphological groups, present in all chrono-cultural periods, that were geographically restricted and consistent with published ancient mitochondrial DNA clusters. These three geographically-separate groups likely represent three distinct genera of rice rats. The first group includes specimens from the North of the archipelago (Saint-Martin, Saba, Saint-Eustatius, Saint-Kitts, and Nevis) and likely referable to as Pennatomys sp.; the second, occurring in the South (Martinique), is assigned to Megalomys desmarestii; and the third corresponds to specimens from the center of the Lesser Antilles (Antigua, Barbuda, Marie-Galante, and Guadeloupe) and likely corresponds to Antillomys sp. These oryzomyine morphotypes are present during all studied periods and support an older presence of these rodents in the region. Our results are congruent with ancient DNA studies that favor the hypothesis of a natural introduction of the group in the archipelago before settlement of human populations. Moreover, the observed phenotypic homogeneity and stability over the 2000 years of Pre-Columbian occupation suggests that rice rats were not part of long-distance inter-island exchanges by humans. Instead, rice rat human consumption was likely based on in-situ hunting of local populations.
Domesticated opium poppy Papaver somniferum L. subsp. somniferum probably originated in the Western Mediterranean from its possible wild progenitor, Papaver somniferum L. subsp. setigerum and spread ...to other European regions. Seeds of opium poppy have been identified in different European regions since the Early Neolithic (from the 6th millennium cal. BC onwards) period. However, until recently, the absence of morphological identification criteria has prevented the discrimination between wild and domestic morphotypes. New morphometric approaches to distinguish modern subspecies have been proven to be applicable to waterlogged archaeological remains, opening the possibility of understanding the process of domestication of the plant in both time and space. This paper applies seed outline analyses, namely elliptic Fourier transforms, combined with size and number of cells to archaeological waterlogged Papaver seeds throughout the Neolithic period in the NW Mediterranean and the surroundings of the Alps. Furthermore, one example from the Late Bronze Age (LBA) was added to see what kind of differences appeared during the >1000 years between the end of the Neolithic and the LBA. The aim of the study is to classify the archaeological seeds as domestic or wild morphotypes and observe morphometric changes in connection to geographical and chronological patterns that can explain the spread and domestication process(es) of this important crop. A total of 295 archaeological seeds coming from 10 waterlogged sites dating between 5300-2300 cal. BC (Neolithic), and one LBA site dating to 1070 cal. BC were analysed. The results indicate the presence of seeds, similar to the wild morphotype, in the Mediterranean sites and larger seeds, similar to the domestic morphotype, in the regions surrounding the Alps. The number of cells mainly increased during the Late Neolithic (3300 to 2300 cal. BC) and, finally, in the Late Bronze Age (ca. 1050-800 cal. BC), larger, morphologically domesticated seeds are clearly predominant. A change in the shape of the seeds is only clearly visible in the LBA material. Altogether our results suggest that opium poppy seeds show no sign of domestication in the early periods of the Neolithic, despite the fact that the plant was very probably already cultivated at that time in the western Mediterranean region.
The pip, as the most common grapevine archaeological remain, is extensively used to document past viticulture dynamics. This paper uses state of the art morphological analyses to analyse the largest ...reference collection of modern pips to date, representative of the present-day diversity of the domesticated grapevine from Western Eurasia. We tested for a costructure between the form of the modern pips and the: destination use (table/wine), geographical origins, and populational labels obtained through two molecular approaches. Significant structuring is demonstrated for each of these cofactors and for the first time it is possible to infer properties of varieties without going through the parallel with modern varieties. These results provide a unique tool that can be applied to archaeological pips in order to reconstruct the spatio-temporal dynamics of grape diversity on a large scale and to better understand viticulture history. The models obtained were then used to infer the affiliations with archaeobotanical remains recovered in Mas de Vignoles XIV (Nîmes, France). The results show a twofold shift between the Late Iron Age and the Middle Ages, from table to wine grape varieties and from eastern to western origins which correlates with previous palaeogenomic results.
The overall similarity of the skull shape of some dog breeds with that of juvenile wolves begs the question if and how ontogenetic changes such as paedomorphosis (evolutionary juvenilisation) played ...a role in domestication. Here we test for changes in patterns of development and growth during dog domestication. We present the first geometric morphometric study using ontogenetic series of dog and wolf crania, and samples of dogs with relatively ancestral morphology and from different time periods. We show that patterns of juvenile-to-adult morphological change are largely similar in wolves and domestic dogs, but differ in two ways. First, dog skulls show unique (neomorphic) features already shortly after birth, and these features persist throughout postnatal ontogeny. Second, at any given age, juvenile dogs exhibit skull shapes that resemble those of consistently younger wolves, even in dog breeds that do not exhibit a 'juvenilized' morphology as adults. These patterns exemplify the complex nature of evolutionary changes during dog domestication: the cranial morphology of adult dogs cannot simply be explained as either neomorphic or paedomorphic. The key to our understanding of dog domestication may lie in a closer comparative examination of developmental phases.
Domestication has led to many changes in domestic animal biology, including their anatomy. The shape of the inner ear, part of the mammalian ear, has been found particularly relevant for ...discriminating domesticated species, their hybrids or differentiating the wild and domestic populations of a single species. Here we assessed the use of the size and shape of the semicircular canals (SCC) of the inner ear as a marker of pig domestication. We studied a total of 63 petrosal bones belonging to wild boar (Sus scrofa, two populations) and domestic pigs (extensively and intensively reared specimens) that were µCT‐scanned and from which the size and the shape of the inner ear were quantified through geometric morphometrics, analyzing the 3D coordinates of 6 landmarks and 60 sliding semilandmarks localized on the SCC and the common crus. The domestic pigs have larger SCC than the wild boar from which they also strongly differ in shape (correct cross validation of 95.5%, confidence interval: 92.3%–98.1%). Strong shape differences were detected between the two populations of wild boar, as well as a sexual size dimorphism. All together the results highlight the taxonomic discriminant power of the SCC of the inner ear shape, and its relevance for domestication studies.
Wild boar and domestic pigs strongly differ in their semicircular canals shape as highlithed by the two first axes of a Principal Component Analysis.
RESEARCH HIGHLIGHTS
The semicircular canals (SCC) shape allow to discriminate wild boar and domestic pig with a correct cross validation of 95.5%
Domestic pigs have larger SCC than the wild boar • Wild boar populations differ in their SCC shape not size.
The shape of the semicircular canal of the inner ear can be used as a marker of domestication
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